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CHOCHOLOVÁ E., JIRKŮ M., LUKEŠ J. (2008) A diagnostic assay based on variable intergenic region distinguishes between Leishmania donovani and Leishmania infantum. Folia Parasitologica 55, 75- 78.
JIRKŮ M., VALIGUROVÁ A., KOUDELA B., KŘÍŽEK J., MODRÝ D., ŠLAPETA J. (2008) New species of Cryptosporidium Tyzzer, 1907 (Apicomplexa) from amphibian host: morphology, biology and phylogeny. Folia Parasitologica 55, 81- 94.
LONG S., JIRKŮ M., AYALA F.J., LUKEŠ J. (2008) Mitochondrial localization but not processing of human frataxin is essential for a rescue of frataxin deficiency in the excavate flagellate Trypanosoma brucei. PNAS 105, 13468- 13473.
LONG S., JIRKŮ M., MACH J., GINGER M.L., ŠUŤÁK R., RICHARDSON D., TACHEZY J., LUKEŠ J. (2008) Ancestral roles of eukaryotic frataxin: mitochondrial frataxin function and heterologous expression of hydrogenosomal Trichomonas homologs in trypanosomes. Molecular Microbiology 69, 94- 109.
MODRÝ D., PETRŽELKOVÁ K., JIRKŮ M., KOUBEK P. (2008) Two new species of Eimeria Schneider, 1875 (Apicomplexa: Eimeriidae) from Gerbilliscus guineae Thomas (Rodentia: Gerbillinae) in the Niokolo Koba National Park, Senegal. Systematic Parasitology 71, 223- 228.
VALIGUROVÁ A., JIRKŮ M., KOUDELA B., GELNAR M., MODRÝ D., ŠLAPETA J. (2008) Cryptosporidia: Epicellular parasites embraced by the host cell membrane. International Journal for Parasitology 38, 913- 922.
YURCHENKO V.A., LUKEŠ J., TESAŘOVÁ M., JIRKŮ M., MASLOV D.A. (2008) Morphological discordance of the new trypanosomatid species phylogenetically associated with the genus Crithidia. Protist 159, 99- 114.
HERDER S., VOTÝPKA J., JIRKŮ M., RÁDROVÁ J., JANZEN C. J., LUKEŠ J. (2007) Trypanosoma brucei 29-13 strain is inducible in but not permissive for the tsetse fly vector. Experimental Parasitology 117, 111- 114.
JIRKŮ M., FIALA I., MODRÝ D. (2007) Tracing the genus Sphaerospora: rediscovery, redescription and phylogeny of the Sphaerospora ranae (Morelle, 1929) n. comb. (Myxosporea, Sphaerosporidae), with emendation of the genus Sphaerospora. Parasitology 134, 1727- 1739.
LUKEŠ J., MAURICIO I.L., SCHÖNIAN G., DUJARDIN J.-C., SOTERIADOU K., DEDET J.-P., KUHLS K., QUISPE TINTAYA W., JIRKŮ M., CHOCHOLOVÁ E., HARALAMBOUS C., PRATLONG F., OBORNÍK M., HORÁK A., AYALA F.J., MILES M.A. (2007) Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy. Proceedings of the National Academy of Science U.S.A. 104, 9375- 9380.
MORAVEC F., MODRÝ D., JIRKŮ M. (2007) A new species of Paracapillaria (Nematoda: Capillariidae) from the intestine of the toad Duttaphrynus melanostictus (Anura) from the Malayan Peninsula. Journal of Parasitology 93, 907- 909.
ZEMANOVÁ E., JIRKŮ M., MAURICIO I.L., HORÁK A., MILES M.A., LUKEŠ J. (2007) The Leishmania donovani complex: Genotypes of five metabolic enzymes (ICD, ME, MPI, G6PDH, FH), new targets for multilocus sequence typing. International Journal for Parasitolology 37, 149- 160.
JIRKŮ M., BOLEK M.G., WHIPPS C.M., JANOVY J. JR., KENT M.L., MODRÝ D. (2006) A new species of Myxidium (Myxosporea: Myxidiidae), from the western chorus frog, Pseudacris triseriata triseriata, and Blanchard’s cricket frog, Acris crepitans blanchardi (Hylidae), from Eastern Nebraska: morphology, phylogeny, and critical comment Journal of Parasitology 92, 611- 619.
JIRKŮ M., MODRÝ D. (2006) Eimeria terraepokotorum n. sp. (Apicomplexa: Eimeriidae) from Hoplobatrachus occipitalis (Anura: Ranidae) from Kenya. Acta Protozoologica 45, 443- 447.
JIRKŮ M., MODRÝ D. (2006) Extra-intestinal localization of Goussia sp. (Apicomplexa) oocysts in Rana dalmatina (Anura: Ranidae), and the fate of infection after metamorphosis. Diseases of Aquatic Organisms 70, 237- 241.
JIRKŮ M., ZEMANOVÁ E., AL-JAWABREH A., SCHÖNIAN G., LUKEŠ J. (2006) Development of a direct species-specific PCR assay for differential diagnosis of Leishmania tropica. Diagnostic Microbiology and Infectious Disease 55, 75- 79.
KOPEČNÁ J., JIRKŮ M., OBORNÍK M., TOKAREV Y.S., LUKEŠ J., MODRÝ D. (2006) Phylogenetic analysis of coccidian parasites from invertebrates: search for missing links. Protist 157, 173- 183.
LUKEŠ J., PARIS Z., REGMI S., BREITLING R., MUREEV S., KUSHNIR S., PYATKOV K., JIRKŮ M., ALEXANDROV K.A. (2006) Translational initiation in Leishmania tarentolae and Phytomonas serpens (Kinetoplastida) is strongly influenced by pre-ATG triplet and its 5‘ sequence context. Molecular and Biochemical Parasitology 148, 125- 132.
MODRÝ D., JIRKŮ M. (2006) Three new species of coccidia (Apicomplexa: Eimeriorina) from the Marble-throated skink, Marmorosphax tricolor Bavay, 1869 (Reptilia: Scincidae), endemic to New Caledonia with a taxonomic revision of Eimeria spp. from scincid hosts. Parasitology Research 99, 419- 428.
YURCHENKO V.A., LUKEŠ J., JIRKŮ M., ZELEDÓN R., MASLOV D.A. (2006) Leptomonas costaricensis sp. n. (Kinetoplastea: Trypanosomatidae), a member of the novel phylogenetic group of insect trypanosomatids closely related to the genus Leishmania. Parasitology 133, 537- 546.
ZÍKOVÁ A., HORÁKOVÁ E., JIRKŮ M., DUNAJČÍKOVÁ P., LUKEŠ J. (2006) The effect of down-regulation of mitochondrial RNA-binding proteins MRP1 and MRP2 on respiratory complexes in procyclic Trypanosoma brucei. Molecular and Biochemical Parasitology 149, 65- 73.
HŮRKOVÁ L., ABU BAKER M., JIRKŮ M., MODRÝ D. (2005) Two new species of Eimeria Schneider 1875 (Apicomplexa: Eimeriidae) from the broad-toothed field mouse, Apodemus mystacinus Danford and Alston 1877 (Rodentia: Muridae) from Jordan. Parasitology Research 97, 33- 40.
JIRKŮ M., MODRÝ D. (2005) Eimeria fragilis and E. wambaensis, two new species of Eimeria Schneider (Apicomplexa: Eimeriidae) from African anurans. Acta Protozoologica 44, 167- 173.
MODRÝ D., JIRKŮ M., HŮRKOVÁ L. (2005) A new coccidian parasite (Apicomplexa: Eimeriidae) from the rufous elephant shrew, Elephantulus rufescens, from Kenya. African Zoology 40, 327- 329.
MODRÝ D., JIRKŮ M., ŠUMBERA R. (2005) Three new species of Eimeria (Apicomplexa: Eimeriidae) from the silvery mole rat Heliophobius argenteocinereus Peters, 1846 (Rodentia: Bathyergidae) from Malawi. Journal of Parasitology 91, 1200- 1203.
MODRÝ D., JIRKŮ M., VESELÝ M. (2004) Two new species of Isospora (Apicomplexa: Eimeriidae) from geckoes of the genus Rhacodactylus (Sauria: Gekkonidae) endemic to New Caledonia. Folia Parasitologica 51, 283- 286.
PODLIPAEV S.A., VOTÝPKA J., JIRKŮ M., SVOBODOVÁ M., LUKEŠ J. (2004) Herpetomonas ztiplika n. sp. (Kinetoplastida: Trypanosomatidae): a parasite of the blood-sucking biting midge Culicoides kibunensis Tokunaga, 1937 (Diptera: Ceratopogonidae). Journal of Parasitology 90, 342- 347.
ZEMANOVÁ E., JIRKŮ M., MAURICIO I.L., MILES M.A., LUKEŠ J. (2004) Genetic polymorphism within the Leishmania donovani complex: correlation with geographic origin. American Journal of Tropical Medicine and Hygiene 70, 613- 617.
ŠLAPETA J.R., MODRÝ D., VOTÝPKA J., JIRKŮ M., LUKEŠ J., KOUDELA B. (2003) Evolutionary relationships among cyst-forming coccidia Sarcocystis spp. (Alveolata: Apicomplexa: Coccidea) in endemic African tree vipers and perspective for evolution of heteroxenous life cycle. Molecular Phylogenetics and Evolution 27, 464- 475.
ZÍKOVÁ A., VANCOVÁ M., JIRKŮ M., LUKEŠ J. (2003) Cruzella marina (Bodonina, Kinetoplastida): non-catenated structure of poly-kinetoplast DNA. Experimental Parasitology 104, 159- 161.
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