Publications of UMBR 2005 

· Adamec, F., Kaftan, D., Nedbal, L.: Stress-induced filament fragmentation of Calothrix elenkiniiI (Cyanobacteria) is facilitated by death of high-fluorescence cells. – J. Phycol. 41: 835-839, 2005. IF(2006): 2,580

· Bertaccini, A., Fránová, J., Botti, S., Tabanelli, D.: Molecular characterization of phytoplasmas in lilies with fasciation in the Czech Republic. - FEMS Microbiol. Lett. 249: 79-85, 2005. IF(2006): 2,068

· Billsten, H.H., Pan, J.X., Sinha, S., Pascher, T., Sundström, V., Polívka, T.: Excited-state processes in the carotenoid zeaxanthin after excess energy excitation. - J. Phys. Chem. A 109: 6852-6859, 2005. IF(2006): 3,047

· Billsten, H.H., Sundström, V., Polívka, T.: Self-assembled aggregates of the carotenoid zeaxanthin: time-resolved study of excited states. - J. Phys. Chem. A 109: 1521-1529, 2005. IF(2006): 3,047

· Bumba, L., Prášil, O., Vácha, F.: Antenna ring around trimeric Photosystem I in chlorophyll b containing cyanobacterium Prochlorothrix hollandica. - Biochim. Biophys. Acta-Bioenerg. 1708: 1-5, 2005. IF(2006): 4,237

· Bumba, L., Tichý, M., Dobáková, M., Komenda, J., Vácha, F.: Localization of the PsbH subunit in photosystem II from the Synechocystis 6803 using the His-tagged Ni-NTA nanogold labeling. – J. Struct. Biol. 152: 28-35, 2005. IF(2006): 3,496

· Bystřická, D., Lenz, O., Mráz, I., Piherová, L., Kmoch, S., Šíp, M.: Oligonucleotide-based microarray: A new improvement in microarray detection of plant viruses. – J. Virol. Methods 128: 176-182, 2005. IF(2006): 2,097

· Doležel, J., Kubaláková, M., Bartoš, J., Macas, J.: Chromosome flow sorting and physical mapping. - In: Meksem, K., Kahl, G. (eds.) - The Handbook of Plant Genome Mapping. Genetic and Physical Mapping, pp.151-171. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany, 2005.

· Fránová, J.: The occurence of phytoplasmas in apple trees showing branch twisting. – J. Phytopathol. 153: 384-388, 2005. IF(2006): 0,817

· Gális, I., Bilyeu, K., Wood, G., Jameson, P.E.: Rhodococcus fascians: Shoot proliferation without elevated cytokinins?. - Plant Growth Regul. 46: 109-115, 2005. IF(2006): 0,903

· Gális, I., Bilyeu, K.D., Godinho, M.J.G., Jameson, P.E.: Expression of three Arabidopsis cytokinin oxidase/dehydrogenase promoter :: GUS chimeric constructs in tobacco: response to developmental and biotic factors. - Plant Growth Regul. 45: 173-182, 2005. IF(2006): 0,903

· Hraška, M., Rakouský, S., Kocábek, T.: Use of a simple semiquantitative method for an appraisal of green fluorescent protein (GFP) gene expression in transgenic tobacco plants. - Biol. Plant. 49: 313-316, 2005. IF(06): 1,198

· Ilagan, R.P., Christensen, R.L., Chapp, T.W., Frank, H.A., Polívka, T., Pascher, T.: Femtosecond time-resolved absorption spectroscopy of astaxantin in solution and in alpha-crustacyanin. - J. Phys. Chem. A 109: 3120-3127, 2005. IF(2006): 3,047

· Kokošková, B., Mráz, I.: Reliability of diagnostic techniques for Erwinia amylovora, the causative agent of fire blight disease. - Folia Microbiol. 50: 217-221, 2005. IF(2006): 0,963

· Kokošková, B., Mráz, I., Janse, J.D., Fousek, J., Jeřábková, R.: Reliability of diagnostic techniques for determination of Clavibacter michiganensis subsp. sepedonicus. - Z. Pflanzenk. Pflanzens.-J. Plant Dis. Prot. 112: 1-16, 2005. IF(2006): 0,239

· Larsen, J., Andersson, J., Polívka, T., Sly, J., Crossley, M.J., Sundström, V., Akesson, E.: Energy transfer and conformational dynamics in Zn-porphyrin dendrimers. – Chem. Phys. Lett. 403: 205-210, 2005. IF(2006): 2,462

· Larsen, J., Brüggemann, B., Polívka, T., Sundström, T., Akesson, V., Sly, J., Crossley, M.J.: Energy transfer within Zn-porphyrin dendrimers: Study of the singlet-singlet annihilation kinetics. - J. Phys. Chem. A 109: 10654-10662, 2005. IF(2006): 3,047

· Litvín, R., Bína, D., Šiffel, P., Vácha, F.: Conformational changes and their role in non-radiative energy dissipation in photosystem II reaction centres. – Photochem. Photobiol. Sci. 4: 999-1002, 2005. IF(2006): 2,416

· Macas, J., Koblížková, A., Neumann, P.: Characterization of Stowaway MITEs in pea (Pisum sativum L.) and identification of their potential master elements. - Genome 48: 831-839, 2005. IF(2006): 1,972

· Matoušek, J., Schubert, J., Ptáček, J., Kozlová, P., Dědič, P.: Complete nucleotide sequence and molecular probing of Potato virus S genome. - Acta Virol. 49: 195-205, 2005. IF(2006): 0,788

· Matoušek, J., Vrba, L., Novák, P., Patzak, J., De Keukeleire, J., Škopek, J., Heyerick, A., Roldán-Ruiz, I., De Keukeleire, D.: Cloning and molecular analysis of the regulatory factor HiMyb1 in hop (Humulus lupulus L.) and the potential of hop to produce bioactive prenylated flavonoids. - J. Agric. Food Chem. 53: 4793-4798, 2005. IF(2006): 2,322

· Nagaki, K., Neumann, P., Zhang, D., Ouyang, S., Buell, C., Cheng, Z., Jiang, J.: Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice. – Mol. Biol. Evol. 22: 845-855, 2005. IF(2006): 6,726

· Navrátil, M., Šafářová, D., Karešová, R., Petrzik, K.: First Incidence of Plum Pox Virus on Apricot Trees in China. - Plant Dis. 89: 338, 2005 IF(2006): 1,795

· Navrátilová, A., Neumann, P., Macas, J.: Long-range organization of plant satellite repeats investigated using strand-specific FISH. – Cytogenet. Genome Res. 109: 58-62, 2005. IF(2006): 1,993

· Neumann, P., Požárková, D., Koblížková, A., Macas, J.: PIGY, a new plant envelope-class LTR retrotransposon. – Mol. Genet. Genomics 273: 43-53, 2005. IF(2006): 2,552

· Palenčár, P., Vácha, F., Kutý, M.: Force field development on pigments of photosystem 2 reaction centre. - Photosynthetica 43: 417-420, 2005. IF(2006): 0,782

· Petrzik, K.: Capsid protein sequence gene analysis of Apple mosaic virus infesting pears. – Eur. J. Plant Pathol. 111: 355-360, 2005. IF(2006): 1,217

· Petrzik, K., Holá, M., Špak, J.: Complete nucleotide sequence of radish mosaic virus RNA polymerase gene and phylogenetic relationships in the genus Comovirus. - Acta Virol. 49: 271-275, 2005. IF(2006): 0,788

· Polívka, T., Kerfeld, C.A., Pascher, T., Sundström, V.: Spectroscopic properties of the carotenoid 3´-hydroxyechinenone in the orange carotenoid protein from the cyanobacterium Arthrospira maxima. - Biochemistry 44: 3994-4003, 2005. IF(2006): 3,633

· Polívka, T., Pascher, T., Sundström, V., Hiller, R.G.: Tuning energy transfer in the peridinin-chlorophyll complex by reconstitution with different chlorophylls. – Photosynth. Res. 86: 217-227, 2005. IF(2006): 2,193

· Polívka, T., Sundström, V.: Carotenoid excited states - photophysics, ultrafast dynamics and photosynthetic functions. - In: Di Bartolo B., Forte O. (eds.): Frontiers of Optical Spectroscopy, pp. 187-219, Springer Verlag, 2005.

· Schubert, J., Matoušek, J., Supp, P.: Stability of pathogen-derived Potato virus Y resistance in potato under field conditions and some aspects of their ecological impact. - In: Wesseler J. H. H. (ed.): Environmental Costs and Benefits of Transgenic Crops, pp. 63-78, Springer Dordrecht, The Netherlands, 2005.

· Sobotka, R., Komenda, J., Bumba, L., Tichý, M.: Photosystem II assembly in CP47 mutant of Synechocystis sp. PCC 6803 is dependent on the level of chlorophyll precursors regulated by ferrochelatase. – J. Biol. Chem. 280: 31595-31602, 2005. IF(2006): 5,808

· Synková, H., Schnablová, R., Hušák, M., Šiffel, P., Bumba, L., Hunalová, I., Čeřovská, N., Vácha, F.: Isolation and characterization of paracrystalline structures from transgenic Pssu-ipt tobacco. - Photosynthetica 43: 509-517, 2005. IF(2006): 0,782

· Šiffel, P., Šantrůček, J.: Diurnal course of photochemical activity of winter-adapted Scots pine at subzero temperatures. - Photosynthetica 43: 395-402, 2005. IF(2006): 0,782

· Tek, A., Song, J., Macas, J., Jiang, J.: Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences. - Genetics 170: 1231-1238, 2005. IF(2006): 4,242

· Vácha, F., Bumba, L., Kaftan, D., Vácha, M.: Microscopy and single molecule detection in photosynthesis. - Micron 36: 483-202, 2005. IF(2006): 1,200

· Vácha, F., Pšenčík, J., Kutý, M., Durchan, M., Šiffel, P.: Evidence for localisation of accumulated chlorophyll cation on the D1-accessory chlorophyll in the reaction centre of Photosystem II. – Photosynth. Res. 84: 297-302, 2005. IF(2006): 2,193

· Valenta, J., Janda, P., Dohnalová, K., Nižňanský, D., Vácha, F., Linnros, J.: Colloidal suspensions of silicon nanocrystals: from single nanocrystals to photonic structures. – Opt. Mater. 27: 1046-1049, 2005. IF(2006): 1,709

· Vrba, L., Matoušek, J.: Expression of modified 7SL RNA gene in transgenic Solanum tuberosum plants. - Biol. Plant. 49: 371-380, 2005. IF(2006): 1,198

· Vredenberg, W., Kasalický, V., Bína, D., Prášil, O.: System analysis of chlorophyll fluorescence kinetics in chloroplasts: sub-maximal yield in singel-turnover excitations and electrical interactions. - In: van der Est A., Bruce D. (eds.): Photosynthesis: Fundamental Aspects to Global Perspectives, p. 190-192, Allen Press Inc., 2005.

· Yukawa, Y., Felis, M., Englert, M., Stojanov, M., Matoušek, J., Beier, H., Sugiura, M.: Plant 7SL RNA genes belong to type 4 of RNA polymerase III-dependent genes that are composed of mixed promoters. - Plant J. 43: 97-106, 2005. IF(2006): 6,565