454 sequencing of M. acuminata 'Calcutta 4' (GS FLX platform)

For detailed informations, please see: Eva Hřibová, Pavel Neumann, Takashi Matsumoto, Nicolas Roux, Jiří Macas, Jaroslav Doležel: Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing. BMC Plant Biology 2010, 10:204. 

• Banana 454 sequencing data

  MA4_454FLX.tar.gz

• Banana specific repeats database

  BananaREP.tar.gz

      BananaREP.zip

• 454 reads containing microsatellites

  TRAP_MA4.tar.gz

      TRAP_MA4_1.zip           TRAP_MA4_2.zip          TRAP_MA4_3.zip

454 reads containing microsatellites are sorted according to length of their repetitive unit; the reads with 2 - 10bp long monomers and  minimal copy number cpmin=5 were identified also with the average similarity higher than 80%  (id-80).

• 454 reads containing ISBP sites

  ISBP_TREP.tar.gz

      ISBP_TREP.zip

Linux/Unix users: Before uncompress the ISBP, install perl (Perl download) and Artemis V11 software (Artemis download). Run .pl files from command prompt.

Windows users: Before uncompress the ISBP, install perl (Perl download) and Artemis V11 software (Artemis download). Each EMBL file should be visualized in Artemis software.