Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

2013

• Contrasting patterns of evolution of 45S and 5S rDNA families uncover new aspects in the genome constitution of the agronomically important grass Thinopyrum intermedium (Triticeae)
  Mahelka, V., Kopecký, D., Baum, B.R.
  MOLECULAR BIOLOGY AND EVOLUTION 30(9), 2065-2086, 2013 Fulltext: PDF link on intranet only
• Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa
  Steflova, P., Tokan, V., Vogel, I., Lexa, M., Macas, J., Novak, P., Hobza, R., Vyskot, B., Kejnovsky, E.
  GENOME BIOLOGY AND EVOLUTION 5, 769-782, 2013 Fulltext: PDF link on intranet only
• Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.)
  Terracciano, I., Maccaferri, M., Bassi, F., Mantovani, P., Sanguineti, M.C., Salvi, S., Šimková, H., Doležel, J., Massi, A., Ammar, K., Kolmer, J., Tuberosa, R.
  THEORETICAL AND APPLIED GENETICS 126, 1077-1101, 2013 Fulltext: PDF link on intranet only
• Dispersion and domestication shaped the genome of bread wheat
  Berkman, P.J., Visendi, P., Lee, H.C., Stiller, J., Manoli, S., Lorenc, M.T., Lai, K., Batley, J., Fleury, D., Šimková, H., Kubaláková, M., Weining, S., Doležel, J., Edwards, D.
  PLANT BIOTECHNOLOGY JOURNAL 11, 564-571, 2013 Fulltext: PDF link on intranet only
• Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
  Varshney, R.K., Song, C., Saxena, R.K., Azam, S., Yu, S., Sharpe, A.G., Cannon, S., Baek, J., Rosen, B.D., Tar’an, B., Millan, T., Zhang, X., Ramsay, L.D., Iwata, A., Wang, Y., Nelson, W., Farmer, A.D., Gaur, P.M., Soderlund, C., Penmetsa, R.V., Xu, C., Bharti, A.K., He, W., Winter, P., Zhao, S., Hane, J.K., Carrasquilla-Garcia, N., Condie, J.A., Upadhyaya, H.D., Luo, M.-C., Thudi, M., Gowda, C.L.L., Singh, N.P., Lichtenzveig, J., Gali, K.K., Rubio, J., Nadarajan, N., Doležel, J., Bansal, K.C., Xu, X., Edwards, D., Zhang, G., Kahl, G., Gil, J., Singh, K.B., Datta, S.K., Jackson, S.A., Wang, J., Cook, D.R.
  NATURE BIOTECHNOLOGY 31, 240-246, 2013 Fulltext: PDF link on intranet only
• Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap
  Jersáková, J., Trávníček, P., Kubátová, B., Krejčíková, J., Urfus, T., Liu, Z.-J., Lamb, A., Ponert, J., Schulte, K., Čurn, V., Vrána, J., Leitch, I.J., Suda, J.
  BOTANICAL JOURNAL OF THE LINNEAN SOCIETY 172, 95-105, 2013 Fulltext: PDF link on intranet only
• Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
  Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
  BMC GENOMICS 14, 222, 2013 Fulltext: PDF link on intranet only
• NITRILASE1 regulates the exit from proliferation, genome stability and plant development.
  Doskočilová A., Kohoutová L., Volc J., Kourová H., Benada O., Chumová J., Plíhal O., Petrovská B., Halada P., Bögre L., Binarová P.
  NEW PHYTOLOGIST 198, 685-698, 2013
• Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.
  Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
  PLoS ONE 8, e59542, 2013 Fulltext: PDF link on intranet only
• Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers
  Molnár, I., Šimková, H., Leverington-Waite, M., Goram, R., Cseh, A., Vrána, J., Farkas, A., Doležel, J., Molnár-Láng, M., Griffiths, S.
  PLoS ONE 8, e70844, 2013 Fulltext: PDF link on intranet only
• The wheat powdery mildew genome shows the unique evolution of an obligate biotroph
  Wicker, T., Oberhaensli, S., Parlange, F., Buchmann, J.P., Shatalina, M., Roffler, S., Ben-David, R., Doležel, J., Šimková, H., Schulze-Lefert, P., Spanu, P.D., Bruggmann, R., Amselem, J., Quesneville, H., Ver Loren van Themaat, E., Paape, T., Shimizu, K.K., Keller, B.
  NATURE GENETICS 45, 1092-1096, 2013 Fulltext: PDF link on intranet only
• A physical map of the short arm of wheat chromosome 1A
  Breen, J., Wicker, T., Shatalina, M., Frenkel, Z., Bertin, I., Philippe, R., Spielmeyer, W., Šimková, H., Šafář, J., Cattonaro, F., Scalabrin, S., Magni, F., Vautrin, S., Berges, H., International Wheat Genome Sequencing Consortium, Paux, E., Fahima, T., Doležel, J., Korol, A., Feuillet, C., Keller, B.
  PLoS ONE 8, e80272, 2013 Fulltext: PDF link on intranet only
• Distribution of different Vrn-B1 alleles in hexaploid spring wheat germplasm
  Milec Z., Sumíková T., Tomková L., Pánková K.
  EUPHYTICA 192, 371-378, 2013 Fulltext: PDF link on intranet only
• Flow sorting and sequencing meadow fescue chromosome 4F
  Kopecký, D., Martis, M., Číhalíková, J., Hřibová, E., Vrána, J., Bartoš, J., Kopecká, J., Cattonaro, F., Stočes, Š., Novák, P., Neumann, P., Macas, J., Šimková, H., Studer, B., Asp, T., Baird, J.H., Navrátil, P., Karafiátová, M., Kubaláková, M., Šafář, J., Mayer, K., Doležel, J.
  PLANT PHYSIOLOGY 163, 1323-1337, 2013 Fulltext: PDF link on intranet only
• Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells
  Petrovská B., Jeřábková H., Kohoutová L., Cenklová V., Pochylová Ž., Gelová Z., Kočárová G., Váchová L., Kurejová M., Tomaštíková E., Binarová P.
  JOURNAL OF EXPERIMENTAL BOTANY 64, 4575-4587, 2013
• Overexpressed TPX2 causes ectopic formation of microtubular arrays in the nuclei of acentrosomal plant cells
  Petrovská, B., Jeřábková, H., Kohoutová, L., Cenklová, V., Pochylová, Ž., Gelová, Z., Kočárová, G., Váchová, L., Kurejová, M., Tomaštíková, E., Binarová, P.
  JOURNAL OF EXPERIMENTAL BOTANY 64, 4575-4587, 2013 Fulltext: PDF link on intranet only
• Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.)
  Ma, J., Stiller, J., Berkman, P.J., Wei, Y., Rogers, J., Feuillet, C., Doležel, J., Mayer, K.F., Eversole, K., Zheng, Y.-L., Liu, C.
  PLoS ONE 8, e79329, 2013 Fulltext: PDF link on intranet only
• Reticulate evolution of the rye genome
  Martis, M.M., Zhou, R., Haseneyer, G., Schmutzer, T., Vrána, J., Kubaláková, M., König, S., Kugler, K.G., Scholz, U., Hackauf, B., Korzun, V., Schön, C.C., Doležel, J., Bauer, E., Mayer, K.F.X., Stein, N.
  PLANT CELL 25, 3685-3698, 2013 Fulltext: PDF link on intranet only
• Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes
  Pont, C., Murat, F., Guizard, S., Flores, R., Foucrier, S., Bidet, Y., Quraishi, U.M., Alaux, M., Doležel, J., Fahima, T., Budak, H., Keller, B., Salvi, S., Maccaferri, M., Steinbach, D., Feuillet, C., Quesneville, H., Salse, J.
  PLANT JOURNAL 76, 1030-1044, 2013 Fulltext: PDF link on intranet only
• Mapping nonrecombining regions in barley using multicolor FISH
  Karafiátová, M., Bartoš, J., Kopecký, D., Ma, L., Sato, K., Houben, A., Stein, N., Doležel, J.
  CHROMOSOME RESEARCH 21, 739-751, 2013 Fulltext: PDF link on intranet only