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[Rhodo] gene list for cv, chromosome v1.0
description | length [aa] | hp_id | cog | code | cog description | beg | end | ori
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description length hp_id cog code cog description begt end ori chromosomal replication initiator protein DnaA 472 cho1 COG0593 L ATPase involved in DNA replication initiation 306 1721 + DNA polymerase III, beta subunit 374 cho2 COG0592 L DNA polymerase sliding clamp subunit (PCNA homolog) 1822 2943 + DNA replication and repair protein RecF 352 cho3 COG1195 L Recombinational DNA repair ATPase (RecF pathway) 2993 4048 + DNA gyrase subunit B 816 cho4 COG0187 L Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 4133 6580 + hypothetical protein AGR_L_3083 180 cho5 6617 7156 + putative chemotaxis MotB protein 283 cho6 COG1360 N Flagellar motor protein 7258 8106 + putative flagellar hook protein 452 cho7 COG1749 N Flagellar hook protein FlgE 8217 9572 + flagellar hook-associated protein FlgK 484 cho8 COG1256 N Flagellar hook-associated protein 9607 11058 + putative flagellar hook-associated protein 360 cho9 10997 12076 + flagellar P-ring protein precursor 365 cho10 COG1706 N Flagellar basal-body P-ring protein 12076 13170 + HlyD family secretion protein 315 cho11 13347 14291 + ABC transporter, ATPase subunit 305 cho12 14291 15205 + ABC transporter, family 2:Polycystic kidney disease type 1 protein 378 cho13 15205 16338 + xylose isomerase 433 cho14 COG2115 G Xylose isomerase 16375 17673 - Xylulose kinase 478 cho15 17673 19106 - ABC transporter related 253 cho16 19109 19867 - inner-membrane translocator 429 cho17 COG4214 G ABC-type xylose transport system, permease component 19867 21153 - D-xylose ABC transporter, substrate-binding protein 339 cho18 COG4213 G ABC-type xylose transport system, periplasmic component 21236 22252 - xylose operon repressor 422 cho19 COG1940 KG Transcriptional regulator/sugar kinase 22472 23737 + FG-GAP repeat domain protein 495 cho21 23737 25221 + methylamine utilization protein MauG, putative 445 cho20 COG1858 P Cytochrome c peroxidase 25224 26558 - hypothetical protein Atu1524 342 cho22 26534 27559 - ribonuclease BN, putative 269 cho24 COG1295 S Predicted membrane protein 27657 28463 + transcriptional regulator, LysR family 296 cho26 29759 30646 + putative outer membrane protein 599 cho27 34146 35942 - Isopentenyl-diphosphate delta-isomerase 176 cho28 COG1443 I Isopentenyldiphosphate isomerase 36050 36577 - Preprotein translocase subunit SecB 164 cho29 COG1952 U Preprotein translocase subunit SecB 36696 37187 - 163 cho30 COG3030 R Protein affecting phage T7 exclusion by the F plasmid 37240 37728 - import inner membrane translocase, subunit Tim44 219 cho31 37839 38495 + putative Smr protein/MutS2 199 cho33 COG2840 S Uncharacterized protein conserved in bacteria 38504 39100 + protein of unknown function DUF900, hydrolase-like 367 cho32 COG4782 S Uncharacterized protein conserved in bacteria 39103 40203 - heat shock protein HslVU, ATPase subunit HslU, putative 433 cho34 COG1220 O ATP-dependent protease HslVU (ClpYQ), ATPase subunit 40246 41544 - ATP-dependent protease hslV 185 cho35 COG5405 O ATP-dependent protease HslVU (ClpYQ), peptidase subunit 41544 42098 - thioredoxin 106 cho36 42213 42530 - Helicase, UvrD/Rep family 1121 cho37 COG1074 L ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 42586 45948 - putative Helicase/Exonuclease 1003 cho38 45948 48956 - nucleotidyltransferase family protein 230 cho39 COG1208 MJ Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 48868 49557 - hypothetical protein RSP_1523 333 cho40 COG3178 R Predicted phosphotransferase related to Ser/Thr protein kinases 49536 50534 - hypothetical protein RSP_1522 158 cho41 COG0802 R Predicted ATPase or kinase 50539 51012 - hypothetical protein RSP_1521 535 cho42 51055 52659 - Sensor histidine kinase PrrB (RegB) 464 cho43 52747 54138 - regulatory protein SenC 221 cho44 COG1999 R Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 54227 54889 + photosynthetic apparatus regulatory protein 184 cho45 COG4567 TK Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 54945 55496 + 102 cho46 COG2916 R DNA-binding protein H-NS 55566 55871 + transcriptional regulator, LysR family 292 cho47 55878 56753 - hypothetical protein RD1_0463 196 cho48 56935 57522 - S-adenosyl-L-homocysteine hydrolase 476 cho49 COG0499 H S-adenosylhomocysteine hydrolase 57609 59036 + hypothetical protein TM1040_2834 113 cho50 59200 59538 + enoyl-CoA hydratase/isomerase family protein 203 cho51 59546 60154 - peptidase U62, modulator of DNA gyrase 448 cho53 COG0312 R Predicted Zn-dependent proteases and their inactivated homologs 61835 63178 + transglycosylase, Slt family 262 cho55 64046 64831 + flagellar biosynthesis protein FlhA 695 cho56 COG1298 NU Flagellar biosynthesis pathway, component FlhA 64834 66918 + flagellar biosynthetic protein FliR 258 cho57 COG1684 NU Flagellar biosynthesis pathway, component FliR 66918 67691 + flagellar biosynthetic protein FlhB 362 cho58 COG1377 NU Flagellar biosynthesis pathway, component FlhB 67691 68776 + 123 cho59 68776 69144 + ParB-like partition protein 282 cho60 COG1475 K Predicted transcriptional regulators 69193 70038 - chromosome partitioning protein ParA 273 cho61 COG1192 D ATPases involved in chromosome partitioning 70092 70910 - methyltransferase GidB 196 cho62 COG0357 M Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 70906 71493 - glucose-inhibited division protein A 620 cho63 COG0445 D NAD/FAD-utilizing enzyme apparently involved in cell division 71527 73386 - tRNA modification GTPase TrmE, putative 427 cho64 COG0486 R Predicted GTPase 73402 74682 - transcription termination factor Rho 422 cho65 COG1158 K Transcription termination factor 74713 75978 - putative integral membrane protein 158 cho66 COG1981 S Predicted membrane protein 76115 76588 - septum formation protein, putative 199 cho67 COG0424 D Nucleotide-binding protein implicated in inhibition of septum formation 76984 77580 + putative shikimate 5-dehydrogenase 276 cho68 COG0169 E Shikimate 5-dehydrogenase 77580 78407 + Dephospho-CoA kinase 198 cho69 COG0237 H Dephospho-CoA kinase 78407 79000 + DNA polymerase III, epsilon subunit 231 cho70 COG0847 L DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 78996 79688 + quinolinate synthetase 350 cho71 COG0379 H Quinolinate synthase 79810 80859 + L-aspartate oxidase 569 cho72 COG0029 H Aspartate oxidase 80712 82418 + nicotinate-nucleotide pyrophosphorylase 280 cho73 COG0157 H Nicotinate-nucleotide pyrophosphorylase 82418 83257 + hydrolase, NUDIX family domain 162 cho74 83273 83758 - Peptidase family S41 454 cho75 COG0793 M Periplasmic protease 83807 85168 - hypothetical protein RSP_0933 365 cho76 85174 86268 - phosphoglyceromutase 506 cho77 COG0696 G Phosphoglyceromutase 86316 87833 - hypothetical protein RD1_0621 155 cho78 COG1576 S Uncharacterized conserved protein 87902 88366 - iojap-related protein 158 cho79 COG0799 S Uncharacterized homolog of plant Iojap protein 88377 88850 - isopropylmalate isomerase large subunit 468 cho80 COG0065 E 3-isopropylmalate dehydratase large subunit 89130 90533 + 3-isopropylmalate dehydratase, small subunit 201 cho81 COG0066 E 3-isopropylmalate dehydratase small subunit 90549 91151 + putative transmembrane hypothetical protein 306 cho82 91328 92245 + 158 cho83 92752 93225 + 3-isopropylmalate dehydrogenase 369 cho84 COG0473 CE Isocitrate/isopropylmalate dehydrogenase 93298 94404 + integral membrane protein, putative 322 cho85 94522 95487 + 153 cho86 95676 96134 - 92 cho87 COG1937 S Uncharacterized protein conserved in bacteria 96287 96562 + cation diffusion facilitator family transporter 318 cho88 COG1230 P Co/Zn/Cd efflux system component 96574 97527 + 89 cho89 97671 97937 + 82 cho90 COG1918 P Fe2+ transport system protein A 97937 98182 + ferrous iron transport protein B 779 cho91 COG0370 P Fe2+ transport system protein B 98182 100518 + 78 cho92 100531 100764 + Hemin ABC transporter, permease protein 409 cho93 COG0609 P ABC-type Fe3+-siderophore transport system, permease component 101532 102758 - periplasmic binding protein 281 cho94 COG4558 P ABC-type hemin transport system, periplasmic component 102598 103440 - hemin transport protein 372 cho95 103440 104555 - TonB-dependent heme/hemoglobin receptor family protein 667 cho96 104533 106533 - predicted ABC-type dipeptide/oligopeptide/nickel transport system, ATP-binding protein 202 cho97 106672 107277 - ABC-type dipeptide transport system, permease protein 284 cho99 108011 108862 - peptide/opine/nickel ABC transporter (PepT) family, periplasmic substrate-binding protein 526 cho101 109848 111425 - protein of unknown function DUF454 128 cho102 COG2832 S Uncharacterized protein conserved in bacteria 111509 111892 - ABC ferric siderophore transporter, ATPase subunit 254 cho103 112144 112905 - ABC ferric siderophore transporter, inner membrane subunit 315 cho104 COG4605 P ABC-type enterochelin transport system, permease component 112905 113849 - iron(III) ABC transporter, permease protein 312 cho105 COG4606 P ABC-type enterochelin transport system, permease component 113842 114777 - ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein 294 cho106 COG4607 P ABC-type enterochelin transport system, periplasmic component 114787 115668 - hypothetical protein RSP_3078 102 cho107 115779 116084 + outer membrane ferric siderophore receptor 702 cho108 116914 119019 - Ribonuclease D 204 cho109 COG0349 J Ribonuclease D 120178 120789 + Sugar phosphate Isomerase 318 cho110 COG0794 M Predicted sugar phosphate isomerase involved in capsule formation 120773 121726 + 199 cho111 121729 122325 + OstA-like protein 161 cho112 COG1934 S Uncharacterized protein conserved in bacteria 122336 122818 + ABC transporter related 252 cho113 COG1137 R ABC-type (unclassified) transport system, ATPase component 122818 123573 + Ribosomal subunit interface protein Y 191 cho114 COG1544 J Ribosome-associated protein Y (PSrp-1) 123803 124375 + PTS IIA-like nitrogen-regulatory protein PtsN 162 cho115 124389 124874 + hypothetical protein TM1040_0020 467 cho116 124881 126281 - core-2/I-branching enzyme family protein 562 cho117 126286 127971 - hypothetical protein Jann_0220 336 cho118 127985 128992 - hypothetical protein SPO0037 340 cho119 129143 130162 - UDP-glucose 4-epimerase 328 cho120 COG1087 M UDP-glucose 4-epimerase 130184 131167 - UTP-glucose-1-phosphate uridylyltransferase 297 cho121 COG1210 M UDP-glucose pyrophosphorylase 131174 132064 - 3-deoxy-D-manno-octulosonate cytidylyltransferase 316 cho122 COG1212 M CMP-2-keto-3-deoxyoctulosonic acid synthetase 132235 133182 - 3,(2,),5,-bisphosphate nucleotidase 264 cho123 COG1218 P 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 133035 133826 - ABC transporter, permease protein 336 cho124 133762 134769 + putative transcriptional regulator, LacI family 343 cho125 134780 135808 - hypothetical protein blr7973 795 cho126 COG1032 C Fe-S oxidoreductase 136010 138394 + 16S rRNA m(5)C 967 methyltransferase 442 cho127 138408 139733 - hypothetical protein RSP_0408 324 cho128 139911 140882 + 164 cho129 140953 141444 - hypothetical protein RHE_CH04096 436 cho130 141583 142890 - ABC-type antimicrobial peptide transport system, ATPase component 245 cho131 142886 143620 - Alkaline phosphatase 497 cho132 COG1785 P Alkaline phosphatase 143850 145340 + 141 cho133 145412 145834 + DNA polymerase III, alpha subunit 1116 cho134 COG0587 L DNA polymerase III, alpha subunit 145859 149206 - hypothetical protein SPO0671 487 cho135 COG0389 L Nucleotidyltransferase/DNA polymerase involved in DNA repair 149206 150666 - hypothetical protein SPO0672 186 cho136 150611 151168 - 3-hydroxybutyryl-CoA dehydrogenase 291 cho137 COG1250 I 3-hydroxyacyl-CoA dehydrogenase 151217 152089 - hypothetical protein RSP_1689 273 cho138 152264 153082 + electron transfer flavoprotein beta-subunit 252 cho140 COG2086 C Electron transfer flavoprotein, beta subunit 154080 154835 - DNA topoisomerase IV subunit A 961 cho141 COG0188 L Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 155312 158194 + elongation factor Tu 436 cho142 COG0050 J GTPases - translation elongation factors 158292 159599 + 1288 cho143 165873 169736 - 200 cho144 COG1434 S Uncharacterized conserved protein 169732 170331 - hypothetical protein ECA3008 165 cho145 170437 170931 - coproporphyrinogen III oxidase 460 cho146 COG0635 H Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 170946 172325 - ABC transporter, periplasmic substrate-binding protein 500 cho147 173036 174535 + ABC transporter, permease protein 314 cho148 174535 175476 + ABC transporter, permease protein 257 cho149 175476 176246 + ABC transporter, ATP-binding protein 461 cho150 176246 177628 + putative amino acid carrier protein 452 cho151 COG1115 E Na+/alanine symporter 177848 179203 + 326 cho152 179303 180280 - Neutral zinc metallopeptidase 586 cho153 180601 182358 - 123 cho154 182396 182764 - Monofunctional biosynthetic peptidoglycan transglycosylase 291 cho155 COG0744 M Membrane carboxypeptidase (penicillin-binding protein) 182858 183730 - Glutamine-pyruvate aminotransferase 1512 cho156 COG0069 E Glutamate synthase domain 2 183705 188240 - undecaprenol kinase protein 264 cho158 COG1968 V Uncharacterized bacitracin resistance protein 190655 191446 - 256 cho160 192952 193719 - hypothetical protein GOX0204 1225 cho161 193861 197535 - putative cell surface polysaccharide export ABC-2 transporter permease protein, close relative of Y20822wzm2 267 cho163 200131 200931 - capsule polysaccharide export ATP-binding protein CtrD 227 cho165 COG1134 GM ABC-type polysaccharide/polyol phosphate transport system, ATPase component 202248 202928 + hypothetical protein Meso_2767 371 cho166 203033 204145 + glucose-1-phosphate thymidylyltransferase 291 cho167 COG1209 M dTDP-glucose pyrophosphorylase 205076 205948 - dTDP-4-dehydrorhamnose reductase 282 cho168 COG1091 M dTDP-4-dehydrorhamnose reductase 205953 206798 - 225 cho169 206804 207478 - dTDP-glucose 4,6-dehydratase 349 cho170 COG1088 M dTDP-D-glucose 4,6-dehydratase 207478 208524 - dTDP-4-dehydrorhamnose 3,5-epimerase 187 cho171 COG1898 M dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 208616 209176 - 879 cho172 209264 211900 - Threonine dehydratase 415 cho173 COG1171 E Threonine dehydratase 212109 213353 + 109 cho174 213363 213689 - response regulator 428 cho176 213839 215122 + Type I secretion membrane fusion protein, HlyD 390 cho175 215125 216294 - ABC transporter related 750 cho177 COG2274 V ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 216294 218543 - outer membrane efflux protein 373 cho178 218561 219679 - hypothetical protein TM1040_0531 915 cho179 219912 222656 - NUDIX hydrolase 147 cho180 222817 223257 - chaperonin, 33 kDa, putative 337 cho181 COG1281 O Disulfide bond chaperones of the HSP33 family 223351 224361 + hydrolase, putative 205 cho182 224333 224947 + polyA polymerase family protein 384 cho183 COG0617 J tRNA nucleotidyltransferase/poly(A) polymerase 224947 226098 + ABC multidrug efflux pump, fused ATPase and inner membrane subunits 616 cho184 COG1132 V ABC-type multidrug transport system, ATPase and permease components 226152 227999 + 23S rRNA (Uracil-5-)-methyltransferase rumA 407 cho185 COG2265 J SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 228053 229273 + ErfK/YbiS/YcfS/YnhG family protein 167 cho186 COG3034 S Uncharacterized protein conserved in bacteria 229355 229855 + SCP-like extracellular protein, putative 169 cho187 229925 230431 - ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein 203 cho188 230592 231200 + ferrochelatase 351 cho189 COG0276 H Protoheme ferro-lyase (ferrochelatase) 231277 232329 - 472 cho190 232430 233845 - Glutaredoxin 85 cho191 COG0695 O Glutaredoxin and related proteins 234047 234301 + hydrolase, carbon-nitrogen family 276 cho192 COG0388 R Predicted amidohydrolase 234304 235131 + transcriptional regulator, MarR family 146 cho193 235131 235568 + modification methylase 367 cho194 COG0863 L DNA modification methylase 235785 236885 - 150 cho196 237710 238159 - putative carboxynorspermidine decarboxylase protein 364 cho198 COG0019 E Diaminopimelate decarboxylase 239313 240404 + saccharopine dehydrogenase family 411 cho199 COG1748 E Saccharopine dehydrogenase and related proteins 240454 241686 + argininosuccinate synthase 409 cho200 COG0137 E Argininosuccinate synthase 241818 243044 + molybdenum cofactor biosynthesis protein 175 cho201 COG0521 H Molybdopterin biosynthesis enzymes 243044 243568 + 3-demethylubiquinone-9 3-methyltransferase 247 cho202 COG2227 H 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 243694 244434 - proline iminopeptidase 335 cho203 244468 245472 + translation initiation factor IF-2 907 cho206 COG0532 J Translation initiation factor 2 (IF-2; GTPase) 248255 250975 + 79 cho207 251374 251610 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 494 cho208 COG1364 E N-acetylglutamate synthase (N-acetylornithine aminotransferase) 251808 253289 - PpiC-type peptidyl-prolyl cis-trans isomerase 289 cho209 COG0760 O Parvulin-like peptidyl-prolyl isomerase 253302 254168 - preprotein translocase, SecA subunit, putative 904 cho210 COG0653 U Preprotein translocase subunit SecA (ATPase, RNA helicase) 254352 257063 + DNA repair protein 254 cho212 COG2003 L DNA repair proteins 258185 258946 - Heat shock protein (Hsp70, DnaK 637 cho214 COG0443 O Molecular chaperone 260277 262187 - alkylated DNA repair protein, putative 211 cho215 COG3145 L Alkylated DNA repair protein 262357 262989 + A/G-specific adenine glycosylase 359 cho216 COG1194 L A/G-specific DNA glycosylase 263048 264124 - hypothetical protein SPO3447 192 cho217 264206 264781 + putative periplasmic thiol-disulphide interchange protein (DsbA family) 220 cho219 COG1651 O Protein-disulfide isomerase 264781 265440 + tetraacyldisaccharide 4,-kinase 329 cho218 COG1663 M Tetraacyldisaccharide-1-P 4'-kinase 265443 266429 - Putative 3-deoxy-D-manno-octulosonic-acid transferase 438 cho220 COG1519 M 3-deoxy-D-manno-octulosonic-acid transferase 266432 267745 - hypothetical protein bll4545 273 cho221 COG1082 G Sugar phosphate isomerases/epimerases 268000 268818 - ATPase, AFG1 family protein 360 cho222 COG1485 R Predicted ATPase 268907 269986 + putative oxidoreductase protein 339 cho223 270229 271245 - Folylpolyglutamate synthetase 424 cho224 COG0285 H Folylpolyglutamate synthase 271345 272616 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit 310 cho225 COG0777 I Acetyl-CoA carboxylase beta subunit 272706 273635 - Abortive infection protein 292 cho226 273714 274589 - protein of unknown function DUF81 252 cho227 274720 275475 + hypothetical protein RSP_1384 329 cho228 275720 276706 - hypothetical protein Jann_0267 174 cho229 276869 277390 + radical SAM superfamily protein 403 cho230 COG0820 R Predicted Fe-S-cluster redox enzyme 277475 278683 + 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 275 cho231 COG2171 E Tetrahydrodipicolinate N-succinyltransferase 279678 280502 + 84 cho232 280508 280759 + hypothetical protein Jann_0351 117 cho233 280776 281126 + Membrane-bound lytic murein transglycosylase B 419 cho234 COG2951 M Membrane-bound lytic murein transglycosylase B 281200 282456 + NnrU family protein 227 cho235 282685 283365 - hypothetical protein RD1_0601 287 cho236 283372 284232 - DNA-binding protein HU, form N 95 cho237 COG0776 L Bacterial nucleoid DNA-binding protein 284413 284697 - AMP nucleosidase 491 cho238 COG0775 F Nucleoside phosphorylase 284846 286318 - adenine deaminase 600 cho239 COG1001 F Adenine deaminase 286318 288117 - hypothetical protein RD1_0614 275 cho240 288194 289018 + major facilitator superfamily MFS_1 411 cho241 289035 290267 - hypothetical protein SPO3436 393 cho242 COG2081 R Predicted flavoproteins 290320 291498 - hypothetical protein SPO3434 341 cho243 COG1466 L DNA polymerase III, delta subunit 291498 292520 - 164 cho244 292520 293011 - leucyl-tRNA synthetase 851 cho245 COG0495 J Leucyl-tRNA synthetase 293001 295553 - 316 cho247 296483 297430 + hypothetical protein RSP_0844 220 cho249 COG0325 R Predicted enzyme with a TIM-barrel fold 297527 298186 + hypothetical protein SPO3428 184 cho248 COG3786 S Uncharacterized protein conserved in bacteria 298189 298740 - 601 cho250 COG0807 H GTP cyclohydrolase II 298740 300542 - 114 cho251 300794 301135 - hypothetical protein RSP_1094 383 cho252 COG1322 S Uncharacterized protein conserved in bacteria 301197 302345 - DNA mismatch repair protein, putative 617 cho253 COG0323 L DNA mismatch repair enzyme (predicted ATPase) 302345 304195 - peptidase M16-like 438 cho254 COG0612 R Predicted Zn-dependent peptidases 304247 305560 - peptidase, M16 family 458 cho255 COG0612 R Predicted Zn-dependent peptidases 305560 306933 - hypothetical protein RSP_1098 184 cho256 307036 307587 - signal peptidase II 158 cho257 COG0597 MU Lipoprotein signal peptidase 307657 308130 - bifunctional purine biosynthesis protein PurH 528 cho258 COG0138 F AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 308140 309723 - 170 cho259 309766 310275 - rRNA methyltransferase RsmB 421 cho261 COG0144 J tRNA and rRNA cytosine-C5-methylases 311621 312883 - 59 cho262 312962 313138 + dihydrodipicolinate reductase 273 cho263 COG0289 E Dihydrodipicolinate reductase 313230 314048 - hypothetical protein RSP_1107 271 cho264 314495 315307 + tRNA pseudouridine synthase B 303 cho265 COG0130 J Pseudouridine synthase 315361 316269 + protein of unknown function DUF1643 172 cho266 316269 316784 + type I secretion target repeat protein 351 cho267 316916 317968 + Ribosomal protein S15 89 cho268 COG0184 J Ribosomal protein S15P/S13E 318103 318369 + Aldehyde dehydrogenase 478 cho269 318530 319963 - 94 cho270 320123 320404 + polyribonucleotide nucleotidyltransferase 726 cho271 COG1185 J Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 320481 322658 - 60 cho272 COG0690 U Preprotein translocase subunit SecE 323114 323293 + Ribosomal protein L11 150 cho274 COG0080 J Ribosomal protein L11 324092 324541 + 50S ribosomal protein L1 232 cho275 COG0081 J Ribosomal protein L1 324548 325243 + ribosomal protein L10 171 cho276 COG0244 J Ribosomal protein L10 325469 325981 + 50S Ribosomal protein L7/L12 124 cho277 COG0222 J Ribosomal protein L7/L12 326053 326424 + DNA-directed RNA polymerase beta subunit 1379 cho278 COG0085 K DNA-directed RNA polymerase, beta subunit/140 kD subunit 326665 330801 + DNA-directed RNA polymerase beta, subunit 1412 cho279 COG0086 K DNA-directed RNA polymerase, beta' subunit/160 kD subunit 330855 335090 + hypothetical protein Jann_0572 274 cho280 335207 336028 + ribosomal protein S12 123 cho281 COG0048 J Ribosomal protein S12 336302 336670 + 30S ribosomal protein S7 156 cho282 COG0049 J Ribosomal protein S7 336686 337153 + Elongation factor G 708 cho283 COG0480 J Translation elongation factors (GTPases) 337166 339289 + Elongation factor TU 391 cho284 COG0050 J GTPases - translation elongation factors 339356 340528 + ribosomal protein S10 102 cho285 COG0051 J Ribosomal protein S10 340716 341021 + 50S ribosomal protein L3 238 cho286 COG0087 J Ribosomal protein L3 341036 341749 + 50S ribosomal protein L4 206 cho287 COG0088 J Ribosomal protein L4 341749 342366 + 50S ribosomal protein L23 98 cho288 COG0089 J Ribosomal protein L23 342366 342659 + ribosomal protein L2 278 cho289 COG0090 J Ribosomal protein L2 342806 343639 + ribosomal protein S19 92 cho290 COG0185 J Ribosomal protein S19 343646 343921 + ribosomal protein L22 126 cho291 COG0091 J Ribosomal protein L22 343930 344307 + ribosomal protein S3 238 cho292 COG0092 J Ribosomal protein S3 344310 345023 + 50S ribosomal protein L16 137 cho293 COG0197 J Ribosomal protein L16/L10E 345040 345450 + 235 cho294 345573 346277 + 66 cho295 COG0255 J Ribosomal protein L29 346457 346654 + Ribosomal protein S17 77 cho296 COG0186 J Ribosomal protein S17 346669 346899 + Ribosomal protein L14 122 cho297 COG0093 J Ribosomal protein L14 346993 347358 + Ribosomal protein L24 102 cho298 COG0198 J Ribosomal protein L24 347361 347666 + Ribosomal protein L5 185 cho299 COG0094 J Ribosomal protein L5 347669 348223 + Ribosomal protein S14 101 cho300 COG0199 J Ribosomal protein S14 348242 348544 + ribosomal protein S8 132 cho301 COG0096 J Ribosomal protein S8 348560 348955 + 50S ribosomal protein L6 177 cho302 COG0097 J Ribosomal protein L6P/L9E 348969 349499 + Ribosomal protein L18 119 cho303 COG0256 J Ribosomal protein L18 349517 349873 + ribosomal protein S5 186 cho304 COG0098 J Ribosomal protein S5 349991 350548 + 63 cho305 COG1841 J Ribosomal protein L30/L7E 350564 350752 + 111 cho306 350842 351174 + ribosomal protein L15 156 cho307 COG0200 J Ribosomal protein L15 351784 352251 + preprotein translocase SecY 461 cho308 COG0201 U Preprotein translocase subunit SecY 352343 353725 + Adenylate kinase 217 cho309 COG0563 F Adenylate kinase and related kinases 353740 354390 + 30S ribosomal protein S13 122 cho310 COG0099 J Ribosomal protein S13 354572 354937 + ribosomal protein S11 129 cho311 COG0100 J Ribosomal protein S11 354956 355342 + DNA-directed RNA polymerase alpha subunit 343 cho312 COG0202 K DNA-directed RNA polymerase, alpha subunit/40 kD subunit 355450 356478 + transcriptional regulator, LuxR family 203 cho314 357215 357823 + N-acyl-L-homoserine lactone synthetase-like 196 cho315 357876 358463 + AAA ATPase, central region 435 cho316 COG2256 L ATPase related to the helicase subunit of the Holliday junction resolvase 358544 359848 + CrcB-like protein 125 cho317 COG0239 D Integral membrane protein possibly involved in chromosome condensation 359883 360257 + Pseudouridine synthase 355 cho318 COG0564 J Pseudouridylate synthases, 23S RNA-specific 360257 361321 + hydrolase, putative 218 cho319 COG0546 R Predicted phosphatases 361321 361974 + ATP12 ATPase 237 cho320 361974 362684 + ABC glutamate/glutamine/aspartate/asparagine transporter, periplasmic substrate-binding protein 338 cho321 362907 363920 + ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztB 426 cho322 364050 365327 + ABC glutamate/glutamine/aspartate/asparagine transporter, inner membrane subunit BztC 434 cho323 365332 366633 + ABC glutamate/glutamine/aspartate/asparagine transporter, ATPase subunit bztD 263 cho324 366647 367435 + hypothetical protein RSP_1070 173 cho325 COG2062 T Phosphohistidine phosphatase SixA 367517 368035 - hypothetical protein RSP_1069 208 cho326 368035 368658 - acetylglutamate kinase 297 cho327 COG0548 E Acetylglutamate kinase 368658 369548 - short-chain dehydrogenase/reductase SDR 243 cho328 369662 370390 + GTP-binding protein 216 cho329 COG0218 R Predicted GTPase 370424 371071 - hypothetical protein RSP_1065 251 cho330 COG3217 R Uncharacterized Fe-S protein 371074 371826 - 60 kDa inner membrane insertion protein 615 cho331 COG0706 U Preprotein translocase subunit YidC 371826 373670 - EAL domain protein 514 cho332 373809 375350 - ATPase of the PP superfamily 316 cho333 COG0037 D Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 375431 376378 - ribonuclease P protein component 162 cho334 COG0594 J RNase P protein component 376574 377059 - 44 cho335 COG0230 J Ribosomal protein L34 377080 377211 - periplasmic sensor signal transduction histidine kinase 467 cho336 377490 378890 + 282 cho337 COG0252 EJ L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 379185 380030 + 168 cho338 380083 380586 - peptidase T 412 cho339 COG2195 E Di- and tripeptidases 380731 381966 - S1 RNA binding domain protein 769 cho340 COG2183 K Transcriptional accessory protein 382072 384378 + cyclic nucleotide-binding protein 608 cho341 384397 386220 - ABC transporter, ATP-binding/permease protein 648 cho342 COG0577 V ABC-type antimicrobial peptide transport system, permease component 386368 388311 - putative HlyD family secretion protein 399 cho343 388316 389512 - 52 cho344 389716 389871 + possible chromosome partitioning protein 314 cho345 389878 390819 - ribosomal protein L31 73 cho346 COG0254 J Ribosomal protein L31 390976 391194 - 50S ribosomal protein L19 124 cho347 COG0335 J Ribosomal protein L19 391209 391580 - hypothetical protein UTI89_P066 168 cho348 391849 392352 - tRNA (guanine-N1)-methyltransferase 297 cho349 COG0336 J tRNA-(guanine-N1)-methyltransferase 392498 393388 - 271 cho350 393388 394200 - putative 16S rRNA processing protein 169 cho351 COG0806 J RimM protein, required for 16S rRNA processing 394203 394709 - ribosomal protein S16 116 cho352 COG0228 J Ribosomal protein S16 394787 395134 - chorismate mutase, putative 98 cho353 COG1605 E Chorismate mutase 395182 395475 - 130 cho354 395551 395940 - signal recognition particle protein 502 cho355 COG0541 U Signal recognition particle GTPase 395945 397450 - transcriptional regulator, LysR family 296 cho356 397725 398612 + OpgC protein 415 cho357 398853 400097 - Glycosyl transferase, family 2 609 cho358 400003 401829 - 70 cho359 401813 402022 - periplasmic glucan biosynthesis protein 559 cho360 COG3131 P Periplasmic glucans biosynthesis protein 402010 403686 - Na+/H+ antiporter, NhaD 441 cho361 COG1055 P Na+/H+ antiporter NhaD and related arsenite permeases 404072 405394 + glutamate-1-semialdehyde 2,1-aminomutase 456 cho362 COG0001 H Glutamate-1-semialdehyde aminotransferase 405563 406930 + Glutamine synthetase 459 cho363 406935 408311 + dihydrodipicolinate synthase 290 cho364 408465 409334 - Putative soluble lytic transglycosylase 652 cho365 COG0741 M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 409461 411416 + protein of unknown function DUF6, transmembrane 292 cho366 411485 412360 - protein of unknown function DUF752 221 cho367 COG4121 S Uncharacterized conserved protein 412360 413022 - FAD dependent oxidoreductase 348 cho368 413076 414119 + glutamate-cysteine ligase 456 cho369 414201 415568 - hypothetical protein RSP_1006 166 cho370 415635 416132 - protein of unknown function DUF558 272 cho371 COG1385 S Uncharacterized protein conserved in bacteria 416132 416947 - 4-hydroxybenzoate polyprenyl transferase 323 cho372 COG0382 H 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 416867 417835 + OmpA domain protein 739 cho373 417900 420116 + peptidase S49 319 cho374 COG0616 OU Periplasmic serine proteases (ClpP class) 420388 421344 + 160 cho375 421519 421998 + excinuclease ABC subunit C 631 cho376 COG0322 L Nuclease subunit of the excinuclease complex 422332 424224 + Lysine 2,3-aminomutase 350 cho377 COG1509 E Lysine 2,3-aminomutase 424261 425310 + Phosphatidylglycerol phosphate synthase 209 cho378 COG0558 I Phosphatidylglycerophosphate synthase 425363 425989 + hypothetical protein RSP_1004 204 cho379 COG0344 S Predicted membrane protein 426013 426624 - Dihydroorotase and related cyclic amidohydrolase 423 cho380 COG0044 F Dihydroorotase and related cyclic amidohydrolases 426649 427917 - 189 cho381 427917 428483 - 161 cho382 428483 428965 - aspartate carbamoyltransferase catalytic subunit 321 cho383 COG0540 F Aspartate carbamoyltransferase, catalytic chain 428961 429923 - hypothetical protein RD1_3420 265 cho384 430841 431635 - hypothetical protein RD1_3419 183 cho385 COG1678 K Putative transcriptional regulator 431778 432326 + probable acyl-CoA dehydrogenase 560 cho386 433569 435248 + putative metallo-beta-lactamase family protein 343 cho387 COG0491 R Zn-dependent hydrolases, including glyoxylases 435248 436276 + hypothetical protein RSP_6127 209 cho388 436408 437034 + 113 cho389 437044 437382 - Branched chain amino acid efflux pump, large (AzlC) subunit 239 cho390 COG1296 E Predicted branched-chain amino acid permease (azaleucine resistance) 437382 438098 - MobC protein 194 cho391 438232 438813 + peptidase, T4 family, putative 328 cho392 COG3191 EQ L-aminopeptidase/D-esterase 438911 439894 + hypothetical protein RD1_0928 257 cho393 439956 440726 - succinate-semialdehyde dehdyrogenase 496 cho394 440803 442290 + hypothetical protein SPO3052 145 cho395 442527 442961 + oxidoreductase, short-chain dehydrogenase/reductase family 214 cho396 443021 443662 + putative transcriptional regulator, LysR family protein 316 cho397 443680 444627 - hypothetical protein SMb20716 343 cho398 444577 445605 + transcriptional regulator, TetR family 206 cho399 445856 446473 - 2,4-dienoyl-CoA reductase (NADPH) protein 678 cho400 446603 448636 + pyruvate kinase 669 cho401 COG0469 G Pyruvate kinase 448862 450868 - Aspartate kinase 419 cho402 COG0527 E Aspartokinases 450545 451801 + PTSINtr with GAF domain, PtsP 748 cho403 COG3605 T Signal transduction protein containing GAF and PtsI domains 451844 454087 + 87 cho404 454128 454388 - 105 cho405 454388 454702 - peptidase, M48 family, putative 290 cho406 454850 455719 - 83 cho407 455726 455974 + Probable pantoate--beta-alanine ligase 279 cho408 COG0414 H Panthothenate synthetase 456086 456922 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 274 cho409 COG0413 H Ketopantoate hydroxymethyltransferase 456922 457743 - 176 cho410 COG3450 R Predicted enzyme of the cupin superfamily 457742 458269 + hypothetical protein RSP_1754 282 cho411 458279 459124 - Putative creatinase 401 cho412 459300 460502 - multidrug/cation efflux pump, RND superfamily 1022 cho413 460901 463966 - multidrug/cation efflux pump, membrane fusion protein subunit 370 cho414 463980 465089 - 149 cho415 465326 465772 + 60 cho416 465896 466075 + 149 cho417 COG3038 C Cytochrome B561 466215 466661 + Esterase/lipase/thioesterase 249 cho418 COG0596 R Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 466739 467485 - serine hydroxymethyltransferase protein 430 cho419 COG0112 E Glycine/serine hydroxymethyltransferase 467571 468860 - inorganic polyphosphate/ATP-NAD kinase, putative 253 cho421 COG0061 G Predicted sugar kinase 469056 469814 + LuxO repressor protein 458 cho420 469817 471190 - histidine kinase 631 cho422 471190 473082 - Possible acyl-CoA sythetase 631 cho423 COG0365 I Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 472857 474749 - Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+)., Phosphate acetyltransferase 760 cho424 COG0281 C Malic enzyme 474955 477234 - Cytidine deaminase, homotetrameric 130 cho425 COG0295 F Cytidine deaminase 477371 477760 + thymidine phosphorylase 439 cho426 COG0213 F Thymidine phosphorylase 477763 479079 + phosphopentomutase 403 cho427 COG1015 G Phosphopentomutase 479082 480290 + uracil phosphoribosyltransferase 210 cho428 COG0035 F Uracil phosphoribosyltransferase 480305 480934 + 522 cho429 481029 482594 + hypothetical protein RD1_3975 341 cho430 482653 483675 - possible transporter, DME family, DMT superfamily 299 cho431 483880 484776 + hypothetical protein SPO2922 215 cho432 484789 485433 + Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine 262 cho433 485475 486260 - putative amino acid ABC transporter, substrate-binding protein 258 cho434 486260 487033 - Probable molybdopterin biosynthesis protein 342 cho435 COG0476 H Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 487097 488122 - Probable deoxyuridine-triphosphatase 155 cho436 COG0756 F dUTPase 488129 488593 - phosphopantothenoylcysteine synthase/decarboxylase 398 cho437 COG0452 H Phosphopantothenoylcysteine synthetase/decarboxylase 488682 489875 - hypothetical protein RSP_0600 269 cho438 489930 490736 - RNA polymerase sigma factor 292 cho439 COG0568 K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 490736 491611 - Glutathione S-transferase family protein 228 cho440 491789 492472 + competence protein ComM 504 cho442 COG0606 O Predicted ATPase with chaperone activity 492533 494044 + Alpha/beta hydrolase fold-3 307 cho441 494016 494936 - glutathione synthetase 314 cho443 COG0189 HJ Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) 494941 495882 - 119 cho444 COG0792 L Predicted endonuclease distantly related to archaeal Holliday junction resolvase 495942 496298 - Protein of unknown function UPF0011 302 cho445 COG0313 R Predicted methyltransferases 496301 497206 - Extracellular ligand-binding receptor 452 cho446 497117 498472 + PII uridylyl-transferase 920 cho447 COG2844 O UTP:GlnB (protein PII) uridylyltransferase 498526 501285 + putative virulence factor, MviN 515 cho448 COG0728 R Uncharacterized membrane protein, putative virulence factor 501285 502829 + Rhomboid-like protein 227 cho449 502836 503516 - tryptophanyl-tRNA synthetase 350 cho450 COG0180 J Tryptophanyl-tRNA synthetase 503603 504652 + multidrug efflux pump, MATE family 441 cho451 COG0534 V Na+-driven multidrug efflux pump 504768 506090 - hypothetical protein RSP_2203 168 cho452 506090 506593 - thioesterase family protein 145 cho453 506593 507027 - transcriptional regulator, MerR family 122 cho454 COG0789 K Predicted transcriptional regulators 507149 507514 + transcriptional regulator, MerR family, putative 127 cho455 COG0789 K Predicted transcriptional regulators 507746 508126 + hypothetical protein RSP_0714 278 cho458 510131 510964 - ribonuclease T2 211 cho459 COG3719 J Ribonuclease I 511022 511654 + Alcohol dehydrogenase, zinc-binding 329 cho460 COG0604 CR NADPH:quinone reductase and related Zn-dependent oxidoreductases 511739 512725 - RpsU-divergently transcribed 226 cho461 512725 513402 - 96 cho464 515535 515822 - transcriptional regulator, AsnC family 181 cho465 515879 516421 - alanine dehydrogenase 372 cho466 COG0686 E Alanine dehydrogenase 516474 517589 + glutathione S-transferase-like 233 cho468 517694 518392 + 217 cho467 518389 519039 - Inositol monophosphatase family protein 263 cho469 COG0483 G Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family 519144 519932 - putative membrane efflux protein 398 cho470 519996 521189 - transcriptional regulator, LysR family 301 cho471 521289 522191 - 5,10-methylenetetrahydrofolate reductase 288 cho472 COG0685 E 5,10-methylenetetrahydrofolate reductase 522286 523149 + hypothetical protein RSP_1993 216 cho474 523097 523744 + hypothetical protein SPO3018 382 cho473 523699 524844 - Putative Ornithine decarboxylase 381 cho475 COG0019 E Diaminopimelate decarboxylase 524973 526115 - Transcriptional regulator, AsnC family 143 cho476 526349 526777 + hypothetical protein SMc04054 256 cho477 COG3324 R Predicted enzyme related to lactoylglutathione lyase 526951 527718 + valyl-tRNA synthetase 1017 cho478 COG0525 J Valyl-tRNA synthetase 527797 530847 + prenyltransferase, UbiA family 479 cho479 COG0382 H 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases 530994 532430 - possible soluble lytic murein transglycosylase 291 cho480 532436 533308 - 64 cho481 533727 533918 + pilus assembly domain protein 291 cho482 534418 535290 + type II and III secretion system protein 469 cho483 COG4964 U Flp pilus assembly protein, secretin CpaC 535468 536874 + OmpA family protein 216 cho484 COG2885 M Outer membrane protein and related peptidoglycan-associated (lipo)proteins 536903 537550 + type II/IV secretion system protein, putative 486 cho486 COG4962 U Flp pilus assembly protein, ATPase CpaF 539071 540528 + Conserved hypothetical protein with TPR repeat 187 cho489 542550 543110 + hypothetical protein RSP_1900 195 cho493 543917 544501 + 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, putative 286 cho492 COG1947 I 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 544500 545357 - TPR domain protein 572 cho494 545347 547062 - Putative electron transfer flavoprotein-ubiquinone oxidoreductase precursor 553 cho495 COG0644 C Dehydrogenases (flavoproteins) 547177 548835 - Transcription elongation factor greA 156 cho496 COG0782 K Transcription elongation factor 549088 549555 + hypothetical protein RD1_3406 345 cho497 549586 550620 + tyrosine phenol-lyase 537 cho498 COG3033 E Tryptophanase 550666 552276 - 70 cho499 552275 552484 + acetyl-CoA acetyltransferase 403 cho500 COG0183 I Acetyl-CoA acetyltransferase 552879 554087 + hypothetical protein SPO2919 165 cho501 554090 554584 + enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase 728 cho502 COG1250 I 3-hydroxyacyl-CoA dehydrogenase 554584 556767 + Putative peptidyl-dipeptidase 671 cho503 COG0339 E Zn-dependent oligopeptidases 556864 558876 + putative transport system permease protein 293 cho504 COG0053 P Predicted Co/Zn/Cd cation transporters 558989 559867 - protein of unknown function DUF1058 206 cho505 559922 560539 - Glycolate reductase 328 cho506 COG1052 CHR Lactate dehydrogenase and related dehydrogenases 560627 561610 + 249 cho507 561677 562423 - dimethylglycine dehydrogenase 832 cho508 562615 565110 + glycosyl hydrolase, family 25 324 cho509 COG3757 M Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 565278 566249 - 120 cho510 566215 566574 - putative FAD-dependent glycerol-3-phosphate dehydrogenase protein 357 cho511 566624 567694 - aspartyl-tRNA synthetase 593 cho513 COG0173 J Aspartyl-tRNA synthetase 572348 574126 + hypothetical protein RHE_CH02551 457 cho514 574227 575597 + Twin-arginine translocation pathway signal 406 cho515 575605 576822 + 44 cho516 576830 576961 - Acetyltransferase 236 cho517 577098 577805 + response regulator receiver protein 236 cho518 577899 578606 - hypothetical protein RD1_1179 134 cho519 578748 579149 + hypothetical protein RSP_0810 261 cho520 579174 579956 - nitroreductase family protein 201 cho521 COG0778 C Nitroreductase 579860 580462 - 83 cho522 COG1872 S Uncharacterized conserved protein 580556 580804 + hypothetical protein SPO3320 215 cho523 581451 582095 + aldehyde dehydrogenase family protein, putative 779 cho524 582189 584525 - hypothetical protein AGR_L_76 372 cho525 COG0274 F Deoxyribose-phosphate aldolase 584536 585651 - 111 cho526 585669 586001 + glutaredoxin-related protein 119 cho527 COG0278 O Glutaredoxin-related protein 586070 586426 - 79 cho528 COG0271 T Stress-induced morphogen (activity unknown) 586464 586700 - phosphoribosylformylglycinamidine synthase subunit II 725 cho529 COG0046 F Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 586885 589059 - Transcriptional regulator, LysR family 305 cho530 589425 590339 - Glutamate racemase 270 cho531 COG0796 M Glutamate racemase 590577 591386 + N-acetyl-gamma-glutamyl-phosphate reductase 418 cho532 COG0002 E Acetylglutamate semialdehyde dehydrogenase 592005 593258 + cytochrome c-type biogenesis protein CcmE 150 cho533 COG2332 O Cytochrome c-type biogenesis protein CcmE 593277 593726 + protein of unknown function DUF847 203 cho534 593794 594402 + hypothetical protein RSP_6081 164 cho535 594396 594887 + methionyl-tRNA synthetase 631 cho536 COG0143 J Methionyl-tRNA synthetase 594958 596850 - 558 cho537 596866 598539 + Phosphatidylethanolamine N-methyltransferase 206 cho538 598677 599294 + molybdenum transport protein ModE 270 cho539 COG2005 R N-terminal domain of molybdenum-binding protein 599316 600125 - Molybdenum-pterin binding protein mopA 265 cho540 COG2005 R N-terminal domain of molybdenum-binding protein 600385 601179 + molybdate transport system substrate-binding protein 289 cho541 COG0725 P ABC-type molybdate transport system, periplasmic component 601106 601972 + molybdenum transport system permease 228 cho542 COG4149 P ABC-type molybdate transport system, permease component 601981 602664 + molybdate ABC transporter, ATPase subunit 363 cho543 COG4148 P ABC-type molybdate transport system, ATPase component 602664 603752 + Nicotinate-nucleotide pyrophosphorylase 279 cho544 COG0157 H Nicotinate-nucleotide pyrophosphorylase 603759 604595 + NifB family--FeMo cofactor biosynthesis protein 497 cho545 604605 606095 - nif-specific regulatory protein,nifA 582 cho546 606267 608012 - sigma-54, RpoN 428 cho547 COG1508 K DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 608309 609592 - 142 cho548 COG0694 O Thioredoxin-like proteins and domains 609734 610159 - nitrogenase molybdenum-iron protein beta chain 512 cho549 610391 611926 - Nitrogenase iron-molybdenum protein, alpha chain 501 cho550 612023 613525 - Nitrogenase iron protein (Nitrogenase component II) 295 cho551 COG1348 P Nitrogenase subunit NifH (ATPase) 613594 614478 - putative 2Fe-2S ferredoxin protein 123 cho552 614746 615114 - 92 cho554 615938 616213 + von Willebrand factor type A domain 747 cho555 616278 618518 - nitric oxide reductase NorQ protein 267 cho556 618530 619330 - ribulose bisphosphate carboxylase, small chain 118 cho557 619433 619786 - Ribulose-bisphosphate carboxylase 473 cho558 COG1850 G Ribulose 1,5-bisphosphate carboxylase, large subunit 619812 621230 - transcriptional regulator, LysR family 298 cho559 621340 622233 + hypothetical protein RSP_0326 183 cho561 622428 622976 + 106 cho560 622979 623296 - 205 cho562 623296 623910 - transcriptional regulator, NifA subfamily, Fis Family 538 cho563 624121 625734 + nitrogenase iron protein 275 cho564 COG1348 P Nitrogenase subunit NifH (ATPase) 626001 626825 + nitrogenase iron-iron protein, alpha chain 527 cho565 626885 628465 + Nitrogenase 460 cho566 628837 630216 + 226 cho567 630290 630967 + hypothetical protein RPE_3879 173 cho568 630967 631485 + hypothetical protein RPA1393 216 cho569 COG3467 R Predicted flavin-nucleotide-binding protein 631500 632147 + Hydroxypyruvate isomerase 257 cho570 COG3622 G Hydroxypyruvate isomerase 632189 632959 - methanol dehydrogenase regulator moxR, putative 337 cho571 COG0714 R MoxR-like ATPases 633616 634626 + N-terminal double-transmembrane domain protein 914 cho572 635531 638272 + hypothetical protein Jann_0686 699 cho574 638272 640368 + hypothetical protein AGR_L_3029 485 cho573 640362 641816 - Ribonucleotide reductase 755 cho575 COG0209 F Ribonucleotide reductase, alpha subunit 642127 644391 + manganese transport protein mntH 431 cho576 COG1914 P Mn2+ and Fe2+ transporters of the NRAMP family 644831 646123 - Iron dependent repressor 149 cho577 COG1321 K Mn-dependent transcriptional regulator 646256 646702 + hypothetical protein Jann_0253 494 cho578 646917 648398 - K+ potassium transporter 934 cho579 COG3158 P K+ transporter 648973 651774 + 169 cho580 651851 652357 + 68 cho581 652580 652783 + 58 cho582 653386 653559 + 156 cho583 COG0864 K Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain 653638 654105 + YaiI/YqxD family protein, putative 148 cho584 COG1671 S Uncharacterized protein conserved in bacteria 654115 654558 - 698 cho585 654606 656699 + Cation/multidrug efflux pump, membrane-fusion protein 366 cho586 656729 657826 + Cation/multidrug efflux pump, RND family 1041 cho587 COG0841 V Cation/multidrug efflux pump 657831 660953 + Membrane fusion protein, HlyD family 334 cho588 661108 662109 + ABC transporter, 2 fused ATPase and 1 inner membrane subunits 902 cho589 662117 664822 + ABC transporter, inner membrane subunit 372 cho590 COG0842 V ABC-type multidrug transport system, permease component 664826 665941 + Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation 610 cho591 666022 667851 + 619 cho592 667863 669719 + Molybdenum cofactor biosynthesis protein 414 cho593 COG0303 H Molybdopterin biosynthesis enzyme 669730 670971 - SIS domain protein 276 cho594 COG1737 K Transcriptional regulators 671406 672233 + putative amino acid uptake ABC transporter periplasmic solute-binding protein precursor 258 cho595 672260 673033 + amino acid ABC transporter, permease protein 236 cho596 COG4215 E ABC-type arginine transport system, permease component 673061 673768 + amino acid ABC transporter, permease protein 232 cho597 COG4160 E ABC-type arginine/histidine transport system, permease component 673773 674468 + ABC-type histidine transport system, ATPase component 259 cho598 COG4598 E ABC-type histidine transport system, ATPase component 674475 675251 + N-acylamino acid racemase 375 cho599 COG4948 MR L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 675251 676375 + chorismate synthase 241 cho601 676375 677097 + 302 cho600 677100 678005 - 265 cho604 683717 684511 - hypothetical protein RD1_1024 637 cho606 688115 690025 - 370 cho607 690012 691121 - hypothetical protein RD1_1020 1049 cho609 693803 696949 - 438 cho610 696922 698235 - periplasmic serine proteinase, putative 590 cho611 698246 700015 - 236 cho612 700018 700725 - hypothetical protein ebA2811 936 cho614 702342 705149 - methyl-accepting chemotaxis sensory transducer 797 cho615 705441 707831 + 1245 cho616 707856 711590 - putative acetyltransferase, GNAT family 152 cho617 712196 712651 - 243 cho618 COG1519 M 3-deoxy-D-manno-octulosonic-acid transferase 712651 713379 - three-deoxy-D-manno-octulosonic-acid transferase 429 cho620 COG1519 M 3-deoxy-D-manno-octulosonic-acid transferase 714012 715298 - 130 cho621 COG0818 M Diacylglycerol kinase 715380 715769 - hypothetical protein RSP_3085 555 cho622 COG2194 R Predicted membrane-associated, metal-dependent hydrolase 715772 717436 - 410 cho624 718210 719439 + ABC-1 440 cho623 COG0661 R Predicted unusual protein kinase 719442 720761 - 211 cho625 720805 721437 - hypothetical protein RSP_3306 162 cho626 721456 721941 - hypothetical protein RSP_0295 274 cho627 722054 722875 - 162 cho628 723050 723535 - possible photosynthetic co 213 cho629 723549 724187 - Reaction centre H protein 254 cho630 724262 725023 - Light-harvesting 1 (B870) complex assembly 477 cho631 725042 726472 - Mg-protoporphyrin IX methyl transferase 224 cho632 726472 727143 - light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein 313 cho633 COG1348 P Nitrogenase subunit NifH (ATPase) 727148 728086 - Magnesium-chelatase subunit H 1194 cho634 COG1429 H Cobalamin biosynthesis protein CobN and related Mg-chelatases 728091 731672 - light-independent protochlorophyllide reductase, B subunit 525 cho635 COG2710 C Nitrogenase molybdenum-iron protein, alpha and beta chains 731665 733239 - light-independent protochlorophyllide reductase, N subunit 424 cho636 733239 734510 - 2-vinyl bacteriochlorophyllide hydratase 171 cho637 734510 735022 - regulatory protein, PpaA 252 cho638 735405 736160 + Transcriptional regulator, PpsR 461 cho639 736262 737644 + Magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66 kDa subunit(bchE) 575 cho640 COG1032 C Fe-S oxidoreductase 738206 739930 + Bacteriochlorophyll synthase, 23 kDa subunit (bchJ) 213 cho641 739949 740587 + bacteriochlorophyll synthase 33 kDa chain 304 cho642 740636 741547 + putative light-harvesting 1 (B870) complex assembly protein PucC 428 cho643 741547 742830 + Geranylgeranyl hydrogenase 391 cho644 COG0644 C Dehydrogenases (flavoproteins) 742835 744007 + Isopentenyl-diphosphate delta-isomerase, type 1 180 cho645 COG1443 I Isopentenyldiphosphate isomerase 744001 744540 + Magnesium-chelatase, BchO 284 cho646 744758 745609 - Magnesium-chelatase, subunit D 580 cho647 745615 747354 - Magnesium-chelatase, ChlI subunit 350 cho648 COG1239 H Mg-chelatase subunit ChlI 747302 748351 - Spheroidene monooxygenase 241 cho649 748351 749073 - phytoene dehydrogenase 524 cho650 COG1233 Q Phytoene dehydrogenase and related proteins 749231 750802 + Squalene/phytoene synthase 339 cho651 COG1562 I Phytoene/squalene synthetase 750802 751818 + TspO and MBR like proteins 160 cho652 COG3476 T Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) 751897 752376 + Methoxyneurosporene dehydrogenase 494 cho653 COG1233 Q Phytoene dehydrogenase and related proteins 753528 755009 - Geranylgeranyl pyrophosphate synthetase 289 cho654 COG0142 H Geranylgeranyl pyrophosphate synthase 755146 756012 + hydroxyneurosporene methyltransferase 393 cho655 756018 757196 + Chlorophyll synthesis pathway, bchC 314 cho656 757362 758303 + chlorophyllide reductase subunit X 333 cho657 COG1348 P Nitrogenase subunit NifH (ATPase) 758306 759304 + Chlorophyllide reductase, BchY subunit 497 cho658 759353 760843 + putative chlorophyllide reductase, BchZ subunit 490 cho659 760846 762315 + 74 cho660 762320 762541 + 49 cho661 762701 762847 + 58 cho662 762864 763037 + PufL, Photosynthetic reaction center L subunit 282 cho663 763173 764018 + PufM, photosynthetic reaction center M subunit 307 cho664 764014 764934 + 78 cho665 764950 765183 + 1-deoxy-D-xylulose-5-phosphate synthase 641 cho666 COG1154 HI Deoxyxylulose-5-phosphate synthase 765367 767289 + 213 cho668 767376 768014 + 224 cho667 768017 768688 - RNA polymerase sigma-70 factor 181 cho669 768688 769230 - hypothetical protein SPO1487 235 cho670 769393 770097 + glutathione peroxidase 183 cho671 COG0386 O Glutathione peroxidase 770097 770645 + probable deoxyribodipyrimidine photo-lyase family protein 519 cho672 770786 772342 + peptide/nickel/opine uptake family ABC transporter, permease protein 302 cho673 772569 773474 - peptide/nickel/opine uptake family ABC transporter, permease protein 335 cho674 773470 774474 - peptide/opine/nickel uptake family ABC transporter, periplasmic substrate-binding protein 567 cho675 774597 776297 - oligopeptide ABC transporter, ATPase component 336 cho676 COG4608 E ABC-type oligopeptide transport system, ATPase component 776357 777364 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 341 cho677 COG0444 EP ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 777360 778382 - AgaE protein 446 cho678 778606 779943 + Peptidase M20D, amidohydrolase 388 cho679 COG1473 R Metal-dependent amidase/aminoacylase/carboxypeptidase 780008 781171 + universal stress family protein 135 cho680 781213 781617 - molybdenum cofactor biosynthesis protein A 333 cho681 COG2896 H Molybdenum cofactor biosynthesis enzyme 781716 782714 - probable kyurenine hydrolase 398 cho682 782790 783983 - 151 cho683 784083 784535 + NAD(P) transhydrogenase subunit alpha 524 cho684 COG3288 C NAD/NADP transhydrogenase alpha subunit 784830 786401 + NAD(P)+ transhydrogenase beta chain 478 cho685 COG1282 C NAD/NADP transhydrogenase beta subunit 786420 787853 + putative integral membrane protein 284 cho686 787995 788846 - malate dehydrogenase 360 cho687 COG0039 C Malate/lactate dehydrogenases 788831 789910 + hypothetical protein SPO0348 349 cho688 789960 791006 - succinyl-CoA synthetase subunit beta 397 cho689 COG0045 C Succinyl-CoA synthetase, beta subunit 791226 792416 + succinyl-CoA synthase, alpha subunit 294 cho690 COG0074 C Succinyl-CoA synthetase, alpha subunit 792424 793305 + 106 cho691 793424 793741 + 122 cho692 793762 794127 + 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) 989 cho693 COG0567 C 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 794373 797339 + dihydrolipoyllysine-residue succinyltransferase, component of 2-oxoglutarate dehydrogenase complex 555 cho694 COG0508 C Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 797230 798894 + Dihydrolipoamide dehydrogenase 462 cho695 COG1249 C Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 799025 800410 + Putative citrate lyase beta chain 288 cho696 COG2301 G Citrate lyase beta subunit 800549 801412 + hypothetical protein RSP_0971 188 cho697 801426 801989 + hypothetical protein RSP_0972 67 cho698 801989 802189 + Succinate dehydrogenase cytochrome b-556 subunit 132 cho701 COG2009 C Succinate dehydrogenase/fumarate reductase, cytochrome b subunit 803571 803966 + succinate dehydrogenase, hydrophobic membrane anchor protein 133 cho702 803980 804378 + succinate dehydrogenase 601 cho703 COG1053 C Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 804398 806200 + 100 cho704 806205 806504 + 390 cho705 806504 807673 + succinate dehydrogenase catalytic subunit 259 cho706 COG0479 C Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 807688 808464 + 54 cho707 808623 808784 + hypothetical protein TM1040_3109 290 cho708 808882 809751 + transcriptional regulator, ArsR family 138 cho709 809783 810196 - 114 cho710 810340 810681 + ATP synthase F0, A subunit 258 cho711 COG0356 C F0F1-type ATP synthase, subunit a 810687 811460 + 78 cho712 COG0636 C F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 811534 811767 + H+-transporting two-sector ATPase, B/B, subunit 186 cho713 COG0711 C F0F1-type ATP synthase, subunit b 811844 812401 + ATP synthase F0, B subunit 185 cho714 COG0711 C F0F1-type ATP synthase, subunit b 812409 812963 + polyhydroxyalkanoate depolymerase, intracellular 422 cho715 813102 814367 - poly(3-hydroxyalkanoate) polymerase, putative 597 cho716 COG3243 I Poly(3-hydroxyalkanoate) synthetase 814459 816249 + phasin, PhaP 148 cho717 816445 816888 + hypothetical protein RSP_0380 180 cho718 817028 817567 + transcriptional regulator, LysR family 314 cho719 817733 818674 + CTP synthetase 547 cho720 COG0504 F CTP synthase (UTP-ammonia lyase) 819030 820670 - adenylosuccinate synthetase 430 cho721 COG0104 F Adenylosuccinate synthase 821440 822729 + 81 cho722 822737 822979 + thiamine pyrophosphokinase, putative 223 cho726 COG1564 H Thiamine pyrophosphokinase 825557 826225 + hydrolase, putative 233 cho728 828095 828793 + chemotaxis protein, putative 780 cho729 828810 831149 - methyl-accepting chemotaxis sensory transducer 645 cho730 831328 833262 - nickel-dependent hydrogenase, large subunit 503 cho731 834328 835836 + HoxW protein 181 cho732 835821 836363 + Hydrogen uptake histidine-kinase 456 cho733 836440 837807 + hydrogenase small subunit 332 cho734 COG1740 C Ni,Fe-hydrogenase I small subunit 837807 838802 + hydrogenase large subunit 476 cho735 838802 840229 + transcriptional regulatory protein 772 cho736 COG0068 O Hydrogenase maturation factor 840186 842501 + hydrogenase protein small subunit 358 cho737 COG1740 C Ni,Fe-hydrogenase I small subunit 842706 843779 + Ni, Fe hydrogenase I cytochrome b subunit 262 cho739 845589 846374 + HycI, hydrogenase maturation protease 224 cho740 COG0680 C Ni,Fe-hydrogenase maturation factor 846537 847208 + 106 cho741 847211 847528 + HupG hydrogenase expression/formation protein 138 cho742 847539 847952 + HupH hydrogenase expression/formation protein 275 cho743 847959 848783 + HupJ, contains rubredoxin domain 278 cho744 848783 849616 + 294 cho745 849616 850497 + Hydrogenase expression/synthesis, HypA family 113 cho746 COG0375 R Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) 850493 850831 + Hydrogenase accessory protein HypB 335 cho747 COG0378 OK Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 850834 851838 + HupR response regulator 492 cho748 851841 853316 + Hydrogenase expression/formation protein HypC 96 cho749 COG0298 O Hydrogenase maturation factor 853319 853606 + hydrogenase isoenzyme formation protein HypD 377 cho750 COG0409 O Hydrogenase maturation factor 853606 854736 + hydrogenase expression/formation protein HypE 340 cho751 COG0309 O Hydrogenase maturation factor 854887 855906 + CheB methylesterase:MCP methyltransferase, CheR-type 1021 cho752 856084 859146 + diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 904 cho753 859146 861857 + 68 cho754 861975 862178 + sulfide-quinone reductase 427 cho755 COG0446 R Uncharacterized NAD(FAD)-dependent dehydrogenases 862245 863525 - bmp family protein 360 cho756 COG1744 R Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 863692 864771 - inner-membrane translocator 309 cho757 COG1079 R Uncharacterized ABC-type transport system, permease component 864814 865740 - inner-membrane translocator 359 cho758 COG4603 R ABC-type uncharacterized transport system, permease component 865740 866816 - ABC transporter related 569 cho759 COG3845 R ABC-type uncharacterized transport systems, ATPase components 866816 868522 - xanthine dehydrogenase, A subunit 462 cho761 871592 872977 - DNA polymerase III subunit alpha 1169 cho762 COG0587 L DNA polymerase III, alpha subunit 873173 876679 + 79 cho763 876692 876928 - histidyl-tRNA synthetase 499 cho764 COG0124 J Histidyl-tRNA synthetase 876969 878465 + histidyl-tRNA synthetase,-like protein, putative 356 cho765 878468 879535 + ATP phosphoribosyltransferase 235 cho766 COG0040 E ATP phosphoribosyltransferase 879535 880239 + rod shape-determining protein 379 cho768 COG0772 D Bacterial cell division membrane protein 881203 882339 - penicillin-binding protein 2 645 cho769 COG0768 M Cell division protein FtsI/penicillin-binding protein 2 882352 884286 - hypothetical protein RSP_2327 179 cho770 884306 884842 - Rod shape-determining protein, MreC 299 cho771 COG1792 M Cell shape-determining protein 884838 885734 - rod shape-determining protein, putative 334 cho772 COG1077 D Actin-like ATPase involved in cell morphogenesis 885773 886774 - Na(+)/H(+) antiporter 1 (sodium/proton antiporter 1) 432 cho773 COG3004 P Na+/H+ antiporter 886956 888251 - putative acetyltransferase, GNAT family 161 cho774 COG1247 M Sortase and related acyltransferases 888274 888756 + heat shock protein DnaJ-like 234 cho775 COG1076 O DnaJ-domain-containing proteins 1 888777 889478 + Endonuclease/exonuclease/phosphatase 342 cho776 889481 890506 + 147 cho777 890528 890968 + Ppx/GppA phosphatase 517 cho778 COG0248 FP Exopolyphosphatase 891207 892757 - polyphosphate kinase 724 cho779 COG0855 P Polyphosphate kinase 892797 894968 - Lipocalin-related protein and Bos/Can/Equ allergen 367 cho781 COG0628 R Predicted permease 895698 896798 - 87 cho782 896955 897215 - transcriptional regulator, LysR family 302 cho783 897321 898226 - hypothetical protein RSP_3123 276 cho784 COG3384 S Uncharacterized conserved protein 898836 899663 + L-lactate dehydrogenase 309 cho785 COG0039 C Malate/lactate dehydrogenases 899673 900599 - cell division protein FtsW 389 cho786 COG0772 D Bacterial cell division membrane protein 900886 902052 + Undecaprenyldiphospho-muramoylpentapeptide beta-N- 367 cho787 COG0707 M UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 902067 903167 + UDP-N-acetylmuramate--L-alanine ligase 468 cho788 COG0773 M UDP-N-acetylmuramate-alanine ligase 903167 904570 + 79 cho789 904585 904821 + UDP-N-acetylenolpyruvoylglucosamine reductase 331 cho790 COG0812 M UDP-N-acetylmuramate dehydrogenase 904945 905937 + D-alanine--D-alanine ligase 304 cho791 COG1181 M D-alanine-D-alanine ligase and related ATP-grasp enzymes 906017 906928 + cell division protein ftsQ 320 cho792 COG1589 M Cell division septal protein 906919 907878 + 242 cho796 910408 911133 + putative UDP-3-O-acyl N-acetylglucosamine deacetylase 305 cho797 COG0774 M UDP-3-O-acyl-N-acetylglucosamine deacetylase 911353 912267 + Putative ComL lipoprotein 281 cho798 COG4105 R DNA uptake lipoprotein 912422 913264 + DNA repair protein RecN 549 cho799 COG0497 L ATPase involved in DNA repair 913298 914944 + 130 cho800 915039 915428 - putative D-lactate dehydrogenase (cytochrome), FAD/FMN-containing oxidoreductase 461 cho801 915428 916810 - Phosphate butyryltransferase 461 cho802 916969 918351 + 389 cho803 COG0282 C Acetate kinase 918354 919520 + metallopeptidase, family M24, putative 599 cho804 COG0006 E Xaa-Pro aminopeptidase 919689 921485 - aerobic cobaltochelatase CobT subunit 624 cho805 921495 923366 - cobalt chelatase, pCobS small subunit 324 cho806 923379 924350 - 123 cho807 924535 924903 + chaperone protein DnaJ, putative 207 cho808 925052 925672 + malate synthase 717 cho809 COG2225 C Malate synthase 925852 928002 - Peptidase M1, alanyl aminopeptidase 848 cho810 COG0308 E Aminopeptidase N 928159 930702 + aspartyl/glutamyl-tRNA amidotransferase subunit B 505 cho811 COG0064 J Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 930879 932393 + hypothetical protein SPO2197 324 cho812 COG2354 S Uncharacterized protein conserved in bacteria 933832 934803 + 184 cho813 934810 935361 - 203 cho814 935598 936206 - extracellular solute-binding protein, family 5 532 cho815 936783 938378 + peptide/opine/nickel uptake family ABC transporter, permease protein 354 cho816 938430 939491 + ABC dipeptide transporter, ATPase subunit DppD 277 cho817 940396 941226 + ABC dipeptide transporter, ATPase subunit DppF 259 cho818 941222 941998 + Dipeptidase 352 cho819 COG2355 E Zn-dependent dipeptidase, microsomal dipeptidase homolog 941998 943053 + ATP-dependent RNA helicase, putative 548 cho820 COG0513 LKJ Superfamily II DNA and RNA helicases 943112 944755 - 269 cho821 944880 945686 - arginyl-tRNA synthetase 624 cho822 COG0018 J Arginyl-tRNA synthetase 945685 947556 + hypothetical protein SPO2503 343 cho823 947614 948642 + beta-hexosaminidase, putative 396 cho824 COG1472 G Beta-glucosidase-related glycosidases 948453 949640 + hypothetical protein RD1_3162 267 cho825 COG1354 S Uncharacterized conserved protein 949636 950436 + Predicted transcriptional regulator containing the HTH domain 213 cho826 COG1386 K Predicted transcriptional regulator containing the HTH domain 950436 951074 + 69 cho827 951079 951285 + 50S ribosomal protein L13 154 cho830 COG0102 J Ribosomal protein L13 954256 954717 + chromosome replication initiation inhibitor protein 309 cho833 957179 958105 + 88 cho834 COG1937 S Uncharacterized protein conserved in bacteria 958145 958408 + alcohol dehydrogenase class III (glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) 369 cho835 COG1062 C Zn-dependent alcohol dehydrogenases, class III 958430 959536 + hypothetical protein MS1387 276 cho836 COG0627 R Predicted esterase 959547 960374 + hypothetical protein RSP_1889 238 cho837 COG0670 R Integral membrane protein, interacts with FtsH 960450 961163 - Alcohol dehydrogenase, zinc-binding 319 cho838 961288 962244 - putative Cro/CI transcriptional regulator 120 cho839 962588 962947 + hydroxydechloroatrazine ethylaminohydrolase 445 cho842 COG0402 FR Cytosine deaminase and related metal-dependent hydrolases 963942 965276 + guanine deaminase 437 cho843 COG0402 FR Cytosine deaminase and related metal-dependent hydrolases 965394 966704 - Mg/Co/Ni transporter, MgtE 460 cho844 COG2239 P Mg/Co/Ni transporter MgtE (contains CBS domain) 966804 968183 + 5-formyltetrahydrofolate cyclo-ligase 191 cho845 COG0212 H 5-formyltetrahydrofolate cyclo-ligase 968183 968755 + Putative alkylphosphonate uptake protein, phnA 114 cho846 COG2824 P Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism 968805 969146 + CHAP 194 cho847 969202 969783 - hypothetical protein RD1_2012 316 cho848 COG1692 S Uncharacterized protein conserved in bacteria 969962 970909 + Probable sodium/sulphate symporter 595 cho849 COG0471 P Di- and tricarboxylate transporters 971044 972828 + 127 cho850 972839 973219 + hypothetical protein RSP_0655 246 cho851 COG0217 S Uncharacterized conserved protein 973308 974045 + hypothetical protein amb2915 332 cho852 974310 975305 - ABC transporter, ATP-binding protein 225 cho853 975305 975979 - Protein of unknown function DUF214 531 cho854 975979 977571 - hypothetical protein amb1469 215 cho855 978018 978662 - 212 cho856 978761 979396 - possible transporter, DMT superfamily 295 cho857 979395 980279 + ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV 353 cho858 COG4175 E ABC-type proline/glycine betaine transport system, ATPase component 980352 981410 - binding-protein-dependent transport systems inner membrane component 343 cho859 COG4176 E ABC-type proline/glycine betaine transport system, permease component 981410 982438 - PUTATIVE GLYCINE BETAINE-BINDING ABC TRANSPORTER PROTEIN 308 cho860 COG2113 E ABC-type proline/glycine betaine transport systems, periplasmic components 982517 983440 - transcriptional regulator, BetI 194 cho861 983557 984138 + Betaine aldehyde dehydrogenase 483 cho862 984138 985586 + choline dehydrogenase 551 cho863 COG2303 E Choline dehydrogenase and related flavoproteins 985673 987325 + nuclease (SNase-like) 211 cho864 987382 988014 + hypothetical conserved membrane protein 184 cho865 COG4420 S Predicted membrane protein 988092 988643 + 87 cho866 988698 988958 + DNA-binding protein, putative 465 cho867 COG3800 R Predicted transcriptional regulator 989024 990418 - 186 cho869 990528 991085 + hypothetical protein DVU2949 116 cho870 992555 992902 - propionyl-CoA carboxylase beta chain 510 cho871 COG4799 I Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 993079 994608 + 179 cho872 994622 995158 + hypothetical protein RSP_2190 132 cho873 995589 995984 + Propionyl-CoA carboxylase alpha subunit 661 cho874 COG4770 I Acetyl/propionyl-CoA carboxylase, alpha subunit 996679 998661 + methylmalonyl-CoA mutase 709 cho875 COG1884 I Methylmalonyl-CoA mutase, N-terminal domain/subunit 998755 1000881 + Bacterioferritin 161 cho876 COG2193 P Bacterioferritin (cytochrome b1) 1001010 1001492 - 80 cho877 1001517 1001756 - phosphatidylserine decarboxylase 288 cho878 COG0688 I Phosphatidylserine decarboxylase 1001755 1002618 + CDP-alcohol phosphatidyltransferase 245 cho879 COG1183 I Phosphatidylserine synthase 1002623 1003357 + 79 cho880 1011092 1011328 - 212 cho881 1011355 1011990 - hypothetical protein SPO2726 627 cho882 1012225 1014105 - gene transfer agent (GTA) like protein 1323 cho883 1014122 1018090 - hypothetical protein SPO2729 151 cho884 1018099 1018551 - homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg13 (37% identity) 301 cho885 1018547 1019449 - 99 cho886 1019449 1019745 - 47 cho888 1022465 1022605 - 135 cho889 1022737 1023141 - hypothetical protein Nwi_2826 314 cho890 1023156 1024097 - 146 cho891 1024125 1024562 - hypothetical protein RPC_0125 213 cho892 1025933 1026571 - 104 cho893 1026571 1026882 - 112 cho894 1026887 1027222 - peptidase U35, phage prohead HK97 672 cho895 1027252 1029267 - Bacteriophage tail assembly protein 660 cho899 COG5525 R Bacteriophage tail assembly protein 1031658 1033637 - 202 cho900 1033627 1034232 - 73 cho901 1034324 1034542 + 305 cho902 1034557 1035471 + hypothetical protein Nwi_0814 234 cho903 1035882 1036583 - hypothetical protein Nwi_0815 324 cho904 1036583 1037554 - ParB-like nuclease 258 cho905 COG1475 K Predicted transcriptional regulators 1037550 1038323 - hypothetical protein Nwi_0817 173 cho906 1038587 1039105 - 321 cho907 1039138 1040100 - 84 cho908 1040308 1040559 - 196 cho909 1040874 1041461 + Phage integrase 409 cho910 1041607 1042833 + type I restriction-modification system restriction subunit 682 cho911 1044366 1046411 + N-6 DNA methylase 489 cho912 COG0286 V Type I restriction-modification system methyltransferase subunit 1046414 1047880 + hypothetical protein ABO_2085 308 cho913 1047880 1048803 + 65 cho914 1050231 1050425 + 550 cho915 1050428 1052077 + 105 cho916 1053292 1053606 - 394 cho917 1053738 1054919 + 326 cho918 1055013 1055990 - 88 cho919 1055993 1056256 - 443 cho920 1056290 1057618 - tail fiber protein, putative 1142 cho921 1057648 1061073 - 146 cho922 1061073 1061510 - 175 cho923 1061516 1062040 - 140 cho924 1062040 1062459 - 1027 cho925 1062459 1065539 - 71 cho926 1065544 1065756 - 125 cho927 1065893 1066267 - 308 cho928 1066403 1067326 - 143 cho929 1067532 1067960 - 141 cho930 1067963 1068385 - 96 cho931 1068388 1068675 - hypothetical protein BB3626 317 cho932 1069302 1070252 - 114 cho933 1070266 1070607 - hypothetical protein plu3438 395 cho934 1070623 1071807 - 184 cho935 1072003 1072554 - bacteriophage Mu GP30-like protein 493 cho936 1072650 1074128 - protein of unknown function DUF935 458 cho937 1074227 1075600 - phage uncharacterized protein 552 cho938 1076308 1077963 - hypothetical protein DVU2704 167 cho939 1077963 1078463 - 88 cho940 1078453 1078716 - 170 cho941 1078716 1079225 - 309 cho942 COG3772 R Phage-related lysozyme (muraminidase) 1079228 1080154 - 122 cho943 1080229 1080594 - 225 cho944 1080646 1081320 - 35 cho945 1081323 1081427 - 148 cho946 1081427 1081870 - 71 cho947 1081870 1082082 - 294 cho948 1082082 1082963 - 91 cho949 COG0776 L Bacterial nucleoid DNA-binding protein 1083043 1083315 - Mu-like prophage FluMu host-nuclease inhibitor protein Gam 180 cho950 1083644 1084183 - 121 cho951 1084173 1084535 - 195 cho952 1084529 1085113 - 257 cho953 1085116 1085886 - bacteriophage transposase A protein 766 cho954 1085922 1088219 - 283 cho956 COG1475 K Predicted transcriptional regulators 1088688 1089536 - 63 cho957 1089549 1089737 - 41 cho958 1090027 1090149 - 105 cho959 1090276 1090590 - 203 cho960 1091130 1091738 + 126 cho961 1091903 1092280 + 143 cho962 1092340 1092768 + 128 cho963 1094536 1094919 - 70 cho964 1095310 1095519 + 317 cho965 1095881 1096831 + hypothetical protein SMc00033 632 cho966 1096758 1098653 + ABC transporter, nucleotide binding/ATPase protein [sn-Glycerol-3-phosphate] 366 cho967 1098681 1099778 - ABC transporter, membrane spanning protein [sn-Glycerol-3-phosphate] 280 cho968 1099778 1100617 - ABC transporter, membrane spanning protein [sn-Glycerol-3-phosphate] 349 cho969 1100624 1101670 - ABC transporter, substrate binding protein [sn-glycerol 3-phosphate] 431 cho970 1101636 1102928 - response regulator receiver protein 189 cho971 COG4567 TK Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain 1103349 1103915 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal 422 cho972 1103911 1105176 - hypothetical protein y2842 368 cho973 1105900 1107003 + ATP-binding protein of iron/siderophore ABC transporter 248 cho975 1108065 1108808 + ABC transporter related 254 cho976 COG1122 P ABC-type cobalt transport system, ATPase component 1108857 1109618 - ABC-type cobalt transport system, permease component CbiQ and related transporters 257 cho977 COG0619 P ABC-type cobalt transport system, permease component CbiQ and related transporters 1109618 1110388 - cobalt transport protein CbiM 347 cho978 COG0310 P ABC-type Co2+ transport system, permease component 1110483 1111523 - 1174 cho979 1111620 1115141 - 308 cho980 1115116 1116039 - 775 cho983 1117060 1119384 - 164 cho984 1119721 1120212 + 118 cho985 1120217 1120570 + 85 cho986 1120570 1120824 + 94 cho988 COG2217 P Cation transport ATPase 1122706 1122987 + 128 cho989 1123079 1123462 + hypothetical protein Patl_0408 285 cho990 1123476 1124330 - Fe(III) dicitrate ABC transporter, ATP-binding protein 260 cho991 1124330 1125109 - Fe(III) dicitrate ABC transporter, permease 347 cho992 1125109 1126149 - Fe(III) dicitrate ABC transporter, permease 372 cho993 1126163 1127278 - outer membrane protein receptor/transporter for ferrichrome, colicin M, and phages T1, T5, and phi80 708 cho994 1128407 1130530 + hypothetical protein plu4257 521 cho995 1130533 1132095 + ATPase 335 cho996 COG0714 R MoxR-like ATPases 1132357 1133361 + 78 cho997 1133361 1133594 + 130 cho998 1133594 1133983 + 151 cho999 1133986 1134438 + 144 cho1000 1134438 1134869 + putative gas vesicle synthesis protein 261 cho1001 1134876 1135658 + 85 cho1002 1135661 1135915 + 316 cho1003 1135908 1136855 + 231 cho1004 1136855 1137547 + 69 cho1005 1137543 1137749 + 220 cho1006 1137745 1138404 + 112 cho1007 1138404 1138739 + 4-coumarate-CoA ligase, putative 465 cho1008 1138756 1140150 - 219 cho1009 1140510 1141166 - 124 cho1010 1141173 1141544 - 142 cho1011 1141571 1141996 - 150 cho1012 1142419 1142868 + 311 cho1013 1142868 1143800 + putative histidine ammonia-lyase 531 cho1014 COG2986 E Histidine ammonia-lyase 1143858 1145450 + gas vesicle synthesis protein GvpA 70 cho1015 1145466 1145675 - 579 cho1016 1145888 1147624 - 232 cho1017 1147769 1148464 + hypothetical protein ELI_03575 115 cho1018 1148596 1148940 + 92 cho1019 1149018 1149293 + 84 cho1020 1149539 1149790 + 325 cho1021 1149790 1150764 + Glycosyl transferase, group 1 393 cho1022 1151183 1152361 + NAD-dependent epimerase/dehydratase 354 cho1024 1153565 1154626 + 384 cho1025 1154864 1156015 + proline iminopeptidase protein 387 cho1028 1159359 1160519 - hypothetical protein mll0599 560 cho1029 1161419 1163098 + permease of oligopeptide ABC transporter 354 cho1030 COG1173 EP ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 1163098 1164159 + permease of oligopeptide ABC transporter 323 cho1031 1164162 1165130 + ABC transporter related 609 cho1032 1165130 1166956 + leucine aminopeptidase 491 cho1033 COG0260 E Leucyl aminopeptidase 1167003 1168475 + hypothetical DNA-binding protein 477 cho1034 1169247 1170677 + aminobenzoyl-glutamate utilization protein 472 cho1035 COG1473 R Metal-dependent amidase/aminoacylase/carboxypeptidase 1170690 1172105 - conserved hypothetical protein TIGR00275 395 cho1036 COG2081 R Predicted flavoproteins 1172508 1173692 + 94 cho1037 1174229 1174510 + ISCc1, transposase OrfB 153 cho1038 1174529 1174987 + 109 cho1039 1175484 1175810 + hypothetical protein Noc_2931 426 cho1040 1175803 1177080 + 145 cho1041 1177111 1177545 - 175 cho1042 1177621 1178145 - 97 cho1043 COG0466 O ATP-dependent Lon protease, bacterial type 1178268 1178558 - 194 cho1044 1178682 1179263 - 29 cho1045 1179863 1179949 + hypothetical protein TM1040_0184 290 cho1046 1180229 1181098 - pyrroline-5-carboxylate reductase, putative 246 cho1047 1181198 1181935 - alpha/beta hydrolase 269 cho1048 1182090 1182896 + 727 cho1049 1182906 1185086 + 53 cho1050 1185326 1185484 + MiaB tRNA modification protein (Radical SAM) 439 cho1051 COG0621 J 2-methylthioadenine synthetase 1185639 1186955 + OmpA/MotB 185 cho1052 1187178 1187732 + 100 cho1053 1187747 1188046 + hypothetical protein RSP_3599 339 cho1054 COG1702 T Phosphate starvation-inducible protein PhoH, predicted ATPase 1188230 1189246 + protein of unknown function UPF0054 188 cho1055 COG0319 R Predicted metal-dependent hydrolase 1189176 1189739 + CorC/Hlyc family protein with CBS domains 301 cho1056 1189771 1190673 + apolipoprotein N-acyltransferase 511 cho1057 COG0815 M Apolipoprotein N-acyltransferase 1190698 1192230 + S-adenosylmethionine synthetase 388 cho1058 COG0192 H S-adenosylmethionine synthetase 1192297 1193460 + tRNA (guanine-N(7)-)-methyltransferase 241 cho1059 COG0220 R Predicted S-adenosylmethionine-dependent methyltransferase 1193714 1194436 + EPSP synthase, 3-phosphoshikimate 1-carboxyvinyltransferase 447 cho1060 COG0128 E 5-enolpyruvylshikimate-3-phosphate synthase 1194535 1195875 + cytidylate kinase 195 cho1061 COG0283 F Cytidylate kinase 1195975 1196559 + hypothetical protein AGR_L_768 210 cho1062 COG0778 C Nitroreductase 1196641 1197270 + 30S ribosomal protein S1 559 cho1063 COG0539 J Ribosomal protein S1 1197435 1199111 + integration host factor, beta subunit 95 cho1064 COG0776 L Bacterial nucleoid DNA-binding protein 1199390 1199674 + 118 cho1065 1199684 1200037 + N-(5,-phosphoribosyl)anthranilate isomerase 192 cho1066 COG0135 E Phosphoribosylanthranilate isomerase 1200141 1200716 + tryptophan synthase subunit beta 410 cho1067 COG0133 E Tryptophan synthase beta chain 1200836 1202065 + 205 cho1068 1202932 1203546 + 166 cho1069 1203559 1204056 - putative aldose 1-epimerase protein 332 cho1070 COG2017 G Galactose mutarotase and related enzymes 1204069 1205064 - zinc ABC transporter, periplasmic zinc-binding protein 320 cho1071 1205122 1206081 - zinc uptake regulation protein 167 cho1072 COG0735 P Fe2+/Zn2+ uptake regulation proteins 1206166 1206666 + zinc ABC transporter, permease protein 330 cho1073 COG1108 P ABC-type Mn2+/Zn2+ transport systems, permease components 1207249 1208238 + carbohydrate kinase, PfkB 315 cho1074 COG1105 G Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 1208287 1209231 - 69 cho1075 1209376 1209582 + hypothetical protein Daro_0142 329 cho1076 1209599 1210585 + protein of unknown function DUF1025 134 cho1077 1210635 1211036 - glutamyl-tRNA synthetase 442 cho1078 COG0008 J Glutamyl- and glutaminyl-tRNA synthetases 1211136 1212461 + glycine cleavage system protein T2 369 cho1079 1212877 1213983 + glycine cleavage system H protein 120 cho1080 COG0509 E Glycine cleavage system H protein (lipoate-binding) 1213996 1214355 + glycine dehydrogenase 944 cho1081 COG1003 E Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 1214371 1217202 + 3-oxoacyl-(acyl-carrier protein) synthase 372 cho1082 COG0332 I 3-oxoacyl-[acyl-carrier-protein] synthase III 1217436 1218551 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 313 cho1083 COG1052 CHR Lactate dehydrogenase and related dehydrogenases 1218612 1219550 - chaperonin CsaA, putative 112 cho1084 COG0073 R EMAP domain 1219553 1219888 - pyrroline-5-carboxylate reductase 270 cho1085 COG0345 E Pyrroline-5-carboxylate reductase 1219888 1220697 - hypothetical protein SPO0910 176 cho1086 1220725 1221252 - chorismate synthase 366 cho1087 COG0082 E Chorismate synthase 1221485 1222582 + 100 cho1088 COG5470 S Uncharacterized conserved protein 1222617 1222916 - imidazole glycerol phosphate synthase subunit HisF 253 cho1090 COG0107 E Imidazoleglycerol-phosphate synthase 1223298 1224056 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 239 cho1091 COG0106 E Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 1224228 1224944 - hypothetical protein TM1040_2038 127 cho1092 1225082 1225462 + universal stress protein family protein 279 cho1093 COG0589 T Universal stress protein UspA and related nucleotide-binding proteins 1225535 1226371 - Cbb3-type cytochrome oxidase CcoN subunit 532 cho1094 COG3278 O Cbb3-type cytochrome oxidase, subunit 1 1226621 1228216 + cytochrome c oxidase, cbb3-type, subunit II 242 cho1095 COG2993 C Cbb3-type cytochrome oxidase, cytochrome c subunit 1228232 1228957 + 58 cho1096 1228972 1229145 + Cbb3-type cytochrome c oxidase CcoP subunit 297 cho1097 1229194 1230084 + iron-sulfur cluster-binding protein 486 cho1098 COG0348 C Polyferredoxin 1230368 1231825 + Copper-translocating P-type ATPase, RdxI 742 cho1099 COG2217 P Cation transport ATPase 1232291 1234516 + 52 cho1100 COG3197 P Uncharacterized protein, possibly involved in nitrogen fixation 1234537 1234692 + D-alanyl-D-alanine carboxypeptidase family protein 538 cho1101 COG1686 M D-alanyl-D-alanine carboxypeptidase 1234798 1236411 - hypothetical protein mlr6523 236 cho1102 COG1011 R Predicted hydrolase (HAD superfamily) 1236615 1237322 - Possible ribosomal RNA small subunit methyltransferase C RsmC 354 cho1103 COG2813 J 16S RNA G1207 methylase RsmC 1237869 1238930 + 136 cho1104 1238955 1239362 - ATP-dependent RNA helicase, DEAD/DEAH box family 670 cho1105 COG0513 LKJ Superfamily II DNA and RNA helicases 1239566 1241575 + porphobilinogen deaminase 317 cho1107 COG0181 H Porphobilinogen deaminase 1242795 1243745 + FAD/FMN-containing dehydrogenase 458 cho1108 1243852 1245225 + putative integral membrane transporter protein 400 cho1109 1245268 1246467 + acyl-CoA thioesterase, putative 235 cho1110 COG2755 E Lysophospholipase L1 and related esterases 1246510 1247214 - ABC efflux transporter, ATPase subunit 252 cho1111 1247114 1247869 + ABC transporter, permease protein 835 cho1112 COG3127 Q Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component 1247869 1250373 + transglycosylase SLT domain protein 155 cho1113 COG0741 M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 1250436 1250900 - heavy metal translocating P-type ATPase 806 cho1114 COG2217 P Cation transport ATPase 1251014 1253431 - 69 cho1115 1253561 1253767 + imidazole glycerol phosphate synthase subunit HisH 213 cho1116 COG0118 E Glutamine amidotransferase 1253864 1254502 - Imidazoleglycerol-phosphate dehydratase 195 cho1117 COG0131 E Imidazoleglycerol-phosphate dehydratase 1254505 1255089 - 65 cho1118 COG3237 S Uncharacterized protein conserved in bacteria 1255561 1255755 + 734 cho1119 1256003 1258204 - hypothetical protein RSP_1753 721 cho1120 1258388 1260550 + phosphonate ABC transporter, ATP-binding protein 312 cho1121 COG3638 P ABC-type phosphate/phosphonate transport system, ATPase component 1260612 1261547 + phosphonate ABC transporter, permease protein 444 cho1123 COG3639 P ABC-type phosphate/phosphonate transport system, permease component 1263445 1264776 + transferase hexapeptide repeat 208 cho1125 1264783 1265406 + transcriptional regulator, GntR family 244 cho1124 1265391 1266122 - alkylphosphonate utilization protein PhnG 148 cho1126 COG3624 P Uncharacterized enzyme of phosphonate metabolism 1266200 1266643 + alkylphosphonate utilization protein PhnH 188 cho1127 COG3625 P Uncharacterized enzyme of phosphonate metabolism 1266649 1267212 + phosphonate metabolism protein, putative 379 cho1128 COG3626 P Uncharacterized enzyme of phosphonate metabolism 1267149 1268285 + phosphonate metabolism protein PhnJ 287 cho1129 COG3627 P Uncharacterized enzyme of phosphonate metabolism 1268442 1269302 + phosphonate C-P lyase system protein PhnK 268 cho1130 COG4107 P ABC-type phosphonate transport system, ATPase component 1269305 1270108 + alkylphosphonate utilization protein PhnL 227 cho1131 COG4778 P ABC-type phosphonate transport system, ATPase component 1270116 1270796 + phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 184 cho1133 COG3709 P Uncharacterized component of phosphonate metabolism 1270796 1271347 + hypothetical protein RSP_2937 223 cho1132 1271320 1271988 - phosphonate metabolism protein PhnM 380 cho1134 COG3454 P Metal-dependent hydrolase involved in phosphonate metabolism 1272078 1273217 + pyruvate carboxylase 1144 cho1135 COG1038 C Pyruvate carboxylase 1273275 1276706 - peptidoglycan binding domain protein 594 cho1136 1276885 1278666 - glycyl-tRNA synthetase alpha subunit 312 cho1137 COG0752 J Glycyl-tRNA synthetase, alpha subunit 1278831 1279766 + 155 cho1138 1279709 1280173 + glycyl-tRNA synthetase beta subunit 754 cho1139 COG0751 J Glycyl-tRNA synthetase, beta subunit 1280178 1282439 + pyruvate phosphate dikinase 845 cho1140 COG0574 G Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 1282580 1285114 + cell wall hydrolase, SleB 282 cho1141 COG3773 M Cell wall hydrolyses involved in spore germination 1285215 1286060 + probable dihydroneopterin aldolase 303 cho1142 COG1539 H Dihydroneopterin aldolase 1286148 1287056 + Dihydropteroate synthase, DHPS 338 cho1143 COG0294 H Dihydropteroate synthase and related enzymes 1287108 1288121 + Phosphoglucomutase/phosphomannomutase 448 cho1144 COG1109 G Phosphomannomutase 1288121 1289464 + 122 cho1145 1289474 1289839 - ketol-acid reductoisomerase 340 cho1146 COG0059 EH Ketol-acid reductoisomerase 1289920 1290939 - Transcriptional regulator, AsnC family 152 cho1147 1291064 1291519 + transcriptional regulator, AsnC family 152 cho1148 1291519 1291974 + Urease accessory protein UreD 282 cho1149 COG0829 O Urease accessory protein UreH 1292071 1292916 + urease gamma subunit 100 cho1150 COG0831 E Urea amidohydrolase (urease) gamma subunit 1292929 1293228 + urease, beta subunit 101 cho1151 COG0832 E Urea amidohydrolase (urease) beta subunit 1293241 1293543 + Urea amidohydrolase (urease) alpha subunit 568 cho1152 COG0804 E Urea amidohydrolase (urease) alpha subunit 1293546 1295249 + 116 cho1153 1295260 1295607 - urease accessory protein UreE 156 cho1154 COG2371 O Urease accessory protein UreE 1295687 1296154 + Urease accessory protein UreF 254 cho1155 COG0830 O Urease accessory protein UreF 1296021 1296782 + Urease accessory protein G 208 cho1156 COG0378 OK Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 1296782 1297405 + ABC branched chain amino acid transporter, substrate binding protein 433 cho1157 COG0683 E ABC-type branched-chain amino acid transport systems, periplasmic component 1297633 1298931 + ABC branched chain amino acid transporter, inner membrane subunit 658 cho1158 1298995 1300968 + ABC branched chain amino acid transporter, ATPase subunit 246 cho1160 COG4674 R Uncharacterized ABC-type transport system, ATPase component 1302303 1303040 + ABC branched chain amino acid transporter, ATPase subunit 231 cho1161 COG0410 E ABC-type branched-chain amino acid transport systems, ATPase component 1303046 1303738 + Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 404 cho1162 1303901 1305112 - 60 cho1163 1305191 1305370 - 60 cho1164 1305514 1305693 - 72 cho1165 1305846 1306061 - Pyrimidine 5-nucleotidase 219 cho1166 COG1011 R Predicted hydrolase (HAD superfamily) 1306210 1306866 - transcriptional regulator, GntR family, putative 211 cho1167 1307025 1307657 + glycosyl transferase, putative 690 cho1168 COG1215 M Glycosyltransferases, probably involved in cell wall biogenesis 1307670 1309739 - carbamoyl-phosphate synthase small subunit 388 cho1169 COG0505 EF Carbamoylphosphate synthase small subunit 1309895 1311058 - 127 cho1170 1311254 1311634 - cytochrome c-551 137 cho1171 COG3474 C Cytochrome c2 1311745 1312155 - lipoyltransferase 328 cho1172 COG0321 H Lipoate-protein ligase B 1312360 1313343 - Hemolysin-type calcium-binding region 767 cho1173 1313472 1315772 + ABC polyamine/opine transporter, ATPase subunit 367 cho1174 1315848 1316948 + polyamine ABC trasnporter, periplasmic polyamine-binding protein 386 cho1175 1316977 1318134 + ABC polyamine/opine transporter, inner membrane subunit 421 cho1176 COG1176 E ABC-type spermidine/putrescine transport system, permease component I 1318239 1319501 + ABC polyamine/opine transporter, inner membrane subunit 317 cho1177 1319517 1320467 + Putative malonate transporter, mdcF, AEC family 316 cho1178 COG0679 R Predicted permeases 1320658 1321605 - hypothetical protein SPO2743 320 cho1179 COG1235 R Metal-dependent hydrolases of the beta-lactamase superfamily I 1321608 1322567 - hydrolase, TatD family 315 cho1180 COG0084 L Mg-dependent DNase 1322401 1323345 - Thymidylate kinase 206 cho1182 COG0125 F Thymidylate kinase 1324321 1324938 - putative D-alanyl-D-alanine carboxypeptidase 386 cho1183 COG1686 M D-alanyl-D-alanine carboxypeptidase 1324946 1326103 - lipoprotein, putative 304 cho1184 1326120 1327031 - site-specific recombinase, phage integrase family 432 cho1186 1327486 1328781 + 69 cho1185 1328784 1328990 - 361 cho1188 1334091 1335173 - site-specific DNA-methyltransferase (adenine-specific) 597 cho1189 COG2189 L Adenine specific DNA methylase Mod 1335477 1337267 + type III restriction enzyme, res subunit 869 cho1190 1337270 1339876 + RECOMBINASE 317 cho1191 1339935 1340885 - hypothetical protein RD1_2485 335 cho1192 1343398 1344402 + 70 cho1194 1344451 1344660 + 108 cho1193 1344606 1344929 - 133 cho1195 1345471 1345869 - 103 cho1196 1346569 1346877 - 85 cho1197 1346956 1347210 + 600 cho1198 1347410 1349209 + 488 cho1199 1349860 1351323 + 548 cho1200 1351323 1352966 + 875 cho1202 1352966 1355590 + 96 cho1201 COG1343 L Uncharacterized protein predicted to be involved in DNA repair 1355593 1355880 - 533 cho1203 1356457 1358055 - 302 cho1204 1358896 1359801 - 214 cho1205 1359914 1360555 + 156 cho1206 1360565 1361032 - 706 cho1207 1361639 1363756 - 155 cho1208 1364049 1364513 - transcriptional regulator 327 cho1209 1364770 1365750 - AAA_5 ATPase 808 cho1210 1365939 1368362 + hypothetical protein RPB_1591 435 cho1211 1368362 1369666 + 240 cho1212 1369730 1370449 + 871 cho1213 1370549 1373161 + 1049 cho1214 1373157 1376303 + 681 cho1215 1376508 1378550 + 334 cho1216 1378553 1379554 + 444 cho1217 1379554 1380885 + hypothetical protein lpl1068 1030 cho1218 COG0553 KL Superfamily II DNA/RNA helicases, SNF2 family 1380891 1383980 + 153 cho1219 1384667 1385125 + 412 cho1220 COG0553 KL Superfamily II DNA/RNA helicases, SNF2 family 1385168 1386403 + 208 cho1221 1386691 1387314 + CRISPR-associated helicase Cas3, core 754 cho1222 COG1203 R Predicted helicases 1387376 1389637 + CRISPR-associated CT1134 family protein 232 cho1223 1389762 1390457 + CRISPR-associated CT1133 family protein 579 cho1224 1390457 1392193 + CRISPR-associated TM1801 family protein 316 cho1225 1392193 1393140 + Protein of unknown function DUF83 216 cho1226 1393143 1393790 + Protein of unknown function DUF48 344 cho1227 COG1518 L Uncharacterized protein predicted to be involved in DNA repair 1393790 1394821 + Protein of unknown function DUF196 96 cho1228 COG1343 L Uncharacterized protein predicted to be involved in DNA repair 1394826 1395113 + hypothetical protein plu3258 510 cho1229 1398668 1400197 - hypothetical protein Tery_0134 395 cho1230 1404238 1405422 + hypothetical protein BF1769 372 cho1231 1405418 1406533 + Pirin-like 302 cho1232 COG1741 R Pirin-related protein 1407749 1408654 - 1565 cho1233 1409062 1413756 - putative transmembrane protein 416 cho1234 1414187 1415434 + 404 cho1235 1415603 1416814 + putative transposase 593 cho1236 1418612 1420390 - DEAD/DEAH box helicase 817 cho1237 COG4096 V Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 1421771 1424221 + N-6 DNA methylase 481 cho1238 COG0286 V Type I restriction-modification system methyltransferase subunit 1424230 1425672 + Type I restriction enzyme EcoAI specificity protein 560 cho1239 COG0732 V Restriction endonuclease S subunits 1425672 1427351 + 312 cho1240 1427351 1428286 + 189 cho1241 1432725 1433291 - 116 cho1242 1433371 1433718 - 144 cho1243 1433718 1434149 - transcriptional regulator 616 cho1244 1435050 1436897 + Hydantoinase/oxoprolinase 717 cho1245 COG0145 EQ N-methylhydantoinase A/acetone carboxylase, beta subunit 1437027 1439177 + Hydantoinase B/oxoprolinase 769 cho1246 COG0146 EQ N-methylhydantoinase B/acetone carboxylase, alpha subunit 1439195 1441501 + acetone carboxylase gamma subunit 167 cho1247 1441560 1442060 + hypothetical protein BCE_4826 303 cho1248 1443901 1444809 + probable iron ABC transporter, substrate-binding protein 344 cho1249 COG0614 P ABC-type Fe3+-hydroxamate transport system, periplasmic component 1444999 1446030 + 194 cho1250 COG0609 P ABC-type Fe3+-siderophore transport system, permease component 1446030 1446611 + 226 cho1251 1446655 1447332 + 102 cho1252 1447692 1447997 + pirin 302 cho1253 COG1741 R Pirin-related protein 1448552 1449457 - pirin C-terminal domain containing protein 316 cho1254 COG1741 R Pirin-related protein 1450284 1451231 + 542 cho1255 1451376 1453001 - 95 cho1256 1453200 1453484 + 121 cho1257 1453490 1453852 + putative chemotaxis two-component sensor histidine kinase protein 663 cho1258 COG0643 NT Chemotaxis protein histidine kinase and related kinases 1453875 1455863 + 160 cho1259 COG0835 NT Chemotaxis signal transduction protein 1455878 1456357 + 208 cho1261 COG0835 NT Chemotaxis signal transduction protein 1458592 1459215 + Methylase of chemotaxis methyl-accepting proteins 296 cho1262 COG1352 NT Methylase of chemotaxis methyl-accepting proteins 1459230 1460117 + Chemotaxis response regulator CheB,consists of CheY-like receiver domain and a methylesterase domain 368 cho1263 COG2201 NT Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 1460124 1461227 + hypothetical protein SMc02177 201 cho1265 1461386 1461988 + PUTATIVE ADENYLATE CYCLASE TRANSMEMBRANE PROTEIN 583 cho1264 1461984 1463732 - PUTATIVE TRANSCRIPTION REGULATOR PROTEIN 233 cho1266 1463735 1464433 - type I secretion target repeat protein 607 cho1267 1464568 1466388 + 2-isopropylmalate synthase 519 cho1268 COG0119 E Isopropylmalate/homocitrate/citramalate synthases 1466450 1468006 - periplasmic sensor signal transduction histidine kinase 504 cho1269 1468299 1469810 - hypothetical protein RSP_2332 490 cho1270 1469946 1471415 - glutamine-dependent NAD(+) synthetase 552 cho1271 1471563 1473218 + 154 cho1272 COG1943 L Transposase and inactivated derivatives 1473443 1473904 - 190 cho1273 1473962 1474531 - ABC transporter, substrate binding protein 365 cho1274 1474569 1475663 + ABC transporter, membrane spanning protein 349 cho1275 1475569 1476615 + ABC transporter, inner membrane subunit 260 cho1276 1476615 1477394 + spermidine/putrescine ABC transporter, ATP-binding protein 348 cho1277 1477394 1478437 + transcriptional regulator, RpiR family 290 cho1278 COG1737 K Transcriptional regulators 1478586 1479455 - TRAP-T family transporter, DctQ (4TMs) subunit 168 cho1279 1479728 1480231 + Putative TRAP-T family transporter, DctM (12TMs) subunit 441 cho1280 1480234 1481556 + TRAP-T family transporter, periplasmic binding protein 344 cho1281 COG4663 Q TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 1481606 1482637 + Glutamine synthetase class-I 454 cho1282 COG0174 E Glutamine synthetase 1482694 1484055 + putative Aldehyde dehydrogenase 462 cho1283 1484099 1485484 + Iron-containing alcohol dehydrogenase 384 cho1284 COG1454 C Alcohol dehydrogenase, class IV 1485484 1486635 + hypothetical protein RSP_1187 809 cho1285 1486572 1488998 + 235 cho1286 1488980 1489684 + UDP-glucose 6-dehydrogenase 434 cho1287 COG1004 M Predicted UDP-glucose 6-dehydrogenase 1490358 1491659 + excinuclease ABC subunit B 727 cho1288 COG0556 L Helicase subunit of the DNA excision repair complex 1491675 1493855 - NADH-ubiquinone oxidoreductase family protein 103 cho1289 1494213 1494521 + transcriptional regulator, RpiR family 320 cho1290 COG1737 K Transcriptional regulators 1495058 1496017 - extracellular solute-binding protein, family 1 340 cho1291 1496004 1497023 + spermidine/putrescine ABC transporter, ATP-binding protein (potA) 358 cho1292 1497031 1498104 + binding-protein-dependent transport systems inner membrane component 293 cho1293 1498104 1498982 + peptidase S58, DmpA 352 cho1295 COG3191 EQ L-aminopeptidase/D-esterase 1499813 1500868 + 229 cho1296 1501202 1501888 - 216 cho1297 1502385 1503032 - quinoprotein ethanol dehydrogenase 622 cho1298 1503081 1504946 - metallo-beta-lactamase family protein 325 cho1299 COG0491 R Zn-dependent hydrolases, including glyoxylases 1504996 1505970 - hypothetical protein SPO1524 258 cho1300 1505970 1506743 - 185 cho1301 1506975 1507529 + two-component sensor histidine kinase 434 cho1302 1507671 1508972 + hypothetical protein mlr7112 329 cho1304 1510439 1511425 + ABC transporter, permease protein 274 cho1305 1511475 1512296 + ABC-type transporter, ATPase component: NitT family 264 cho1306 1512296 1513087 + 62 cho1307 1513199 1513384 + 189 cho1308 1519705 1520271 - 116 cho1309 1520403 1520750 - hypothetical protein Mmar10_0930 208 cho1310 1520750 1521373 - 813 cho1311 1521386 1523824 - 111 cho1312 1523820 1524152 - 298 cho1313 1524489 1525382 - hypothetical protein amb0381 140 cho1314 1525410 1525829 - hypothetical protein Nwi_2829 207 cho1315 1526938 1527558 - 107 cho1316 1527558 1527878 - 420 cho1317 1527878 1529137 - prophage LambdaMc01, peptidase, U7 family 316 cho1318 COG0616 OU Periplasmic serine proteases (ClpP class) 1530060 1531007 - flavodoxin 182 cho1319 COG0716 C Flavodoxins 1531461 1532006 + 150 cho1320 1532036 1532485 + 73 cho1321 1533176 1533394 + hypothetical protein plu2318 605 cho1322 1534179 1535993 + bifunctional ABC lipid A transporter 580 cho1323 COG1132 V ABC-type multidrug transport system, ATPase and permease components 1535993 1537732 + 421 cho1324 1537720 1538982 + TonB-dependent receptor 737 cho1325 1539002 1541212 + putative O-methyltransferase 278 cho1326 1541227 1542060 + transcriptional regulator, AraC family 333 cho1327 1542069 1543067 - putative transcriptional regulator 299 cho1328 1543520 1544416 + TonB dependent outer membrane ferrichrome-iron receptor 710 cho1329 1544458 1546587 - putative iron uptake protein 328 cho1330 1546863 1547846 + putative iron uptake protein 342 cho1331 1547846 1548871 + putative iron uptake protein 343 cho1332 1548871 1549899 + ABC Fe+3-siderophore transporter, ATPase subunit 271 cho1333 COG1120 PH ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 1549899 1550711 + Siderophore-interacting protein 344 cho1334 COG2375 P Siderophore-interacting protein 1550707 1551738 + Putative inner membrane ABC-transporter 604 cho1335 1551911 1553722 + Putative ABC transporter protein 597 cho1336 COG1132 V ABC-type multidrug transport system, ATPase and permease components 1553725 1555515 + ferric vibriobactin ABC transporter, ATP-binding protein 269 cho1337 COG1120 PH ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 1555558 1556364 - ferric vibriobactin ABC transporter, permease protein 477 cho1338 1556364 1557794 - ferric vibriobactin ABC transporter, periplasmic ferric vibriobactin-binding protein 314 cho1339 1558414 1559355 - TonB-dependent receptor 693 cho1340 1559653 1561731 + hypothetical protein RSP_2986 458 cho1341 COG0624 E Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 1561957 1563330 - 5-aminolevulinic acid synthase 409 cho1342 COG0156 H 7-keto-8-aminopelargonate synthetase and related enzymes 1563558 1564784 + hypothetical protein RSP_2983 408 cho1343 1564894 1566117 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 373 cho1344 COG0821 I Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 1566204 1567322 + seryl-tRNA synthetase 545 cho1345 COG0172 J Seryl-tRNA synthetase 1567383 1569017 - transporter, AcrB/AcrD/AcrF family 1072 cho1348 COG0841 V Cation/multidrug efflux pump 1570044 1573259 + Mg2+ transporter protein, CorA-like 322 cho1349 COG0598 P Mg2+ and Co2+ transporters 1574558 1575523 + hypothetical protein TM1040_0952 191 cho1350 COG3577 R Predicted aspartyl protease 1575702 1576274 - multiple antibiotic resistance (MarC)-related proteins 210 cho1351 COG2095 U Multiple antibiotic transporter 1576319 1576948 - 119 cho1352 COG2378 K Predicted transcriptional regulator 1577000 1577356 - 68 cho1353 COG1826 U Sec-independent protein secretion pathway components 1577512 1577715 + 156 cho1354 COG1826 U Sec-independent protein secretion pathway components 1577743 1578210 + twin-arginine translocation system protein, TatC 282 cho1355 COG0805 U Sec-independent protein secretion pathway component TatC 1578210 1579055 + protein of unknown function DUF815 279 cho1356 COG2607 R Predicted ATPase (AAA+ superfamily) 1579055 1579891 + ribonucleotide-diphosphate reductase alpha subunit 1224 cho1357 COG0209 F Ribonucleotide reductase, alpha subunit 1580678 1584349 + 81 cho1358 1584841 1585083 + hypothetical protein Tery_3237 364 cho1359 1585257 1586348 - glutamate synthase, putative 548 cho1360 COG0069 E Glutamate synthase domain 2 1586599 1588242 - transcriptional regulator, LysR family 307 cho1361 1588331 1589251 - oxidoreductase 427 cho1362 1589422 1590702 + 477 cho1363 1590715 1592145 + aldehyde dehydrogenase 503 cho1364 1592165 1593673 + ASPARTATE AMINOTRANSFERASE B PROTEIN 411 cho1366 1593684 1594916 + 3-dehydroquinate dehydratase 147 cho1365 COG0757 E 3-dehydroquinate dehydratase II 1594919 1595359 - hypothetical protein mll6243 341 cho1367 1595434 1596456 - amino acid permease-associated region 476 cho1368 1596587 1598014 + ornithine cyclodeaminase 379 cho1369 COG2423 E Predicted ornithine cyclodeaminase, mu-crystallin homolog 1598075 1599211 + putative translation initiation inhibitor 139 cho1370 1599272 1599688 + hypothetical protein VV1566 430 cho1371 1599695 1600984 + hypothetical protein RD1_3877 187 cho1372 1601067 1601627 + 274 cho1373 1601747 1602568 + transmembrane pair 143 cho1374 1602709 1603137 + UDP-N-acetylmuramyl-tripeptide synthetases 494 cho1375 COG0769 M UDP-N-acetylmuramyl tripeptide synthase 1603260 1604741 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 483 cho1376 COG0770 M UDP-N-acetylmuramyl pentapeptide synthase 1604746 1606194 + phospho-N-acetylmuramoyl-pentapeptide transferase 360 cho1377 COG0472 M UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 1606197 1607276 + 117 cho1378 1607305 1607655 + UDP-N-acetylmuramoylalanine--D-glutamate ligase 466 cho1379 COG0771 M UDP-N-acetylmuramoylalanine-D-glutamate ligase 1608005 1609402 + hypothetical protein SPO2035 192 cho1380 1609476 1610051 + hypothetical protein BURPS1710b_A2597 157 cho1381 1610065 1610535 + phosphoribosylaminoimidazole synthetase 348 cho1382 COG0150 F Phosphoribosylaminoimidazole (AIR) synthetase 1610617 1611660 + Phosphoribosylglycinamide formyltransferase 181 cho1383 COG0299 F Folate-dependent phosphoribosylglycinamide formyltransferase PurN 1611705 1612247 + Ribonuclease D 384 cho1384 COG0349 J Ribonuclease D 1612611 1613762 + UvrD/REP helicase 852 cho1385 COG0210 L Superfamily I DNA and RNA helicases 1613995 1616550 - 173 cho1386 1616681 1617199 + hypothetical protein RD1_1941 363 cho1387 COG1469 S Uncharacterized conserved protein 1617306 1618394 - O-succinylhomoserine sulfhydrylase 399 cho1388 COG0626 E Cystathionine beta-lyases/cystathionine gamma-synthases 1618607 1619803 - 164 cho1390 1621890 1622381 - Probable SufE protein 141 cho1391 COG2166 R SufE protein probably involved in Fe-S center assembly 1622538 1622960 + hypothetical protein SPO2837 255 cho1392 COG2071 R Predicted glutamine amidotransferases 1623051 1623815 + hypothetical protein SPO2798 278 cho1393 1623864 1624697 - D-fructose-6-phosphate amidotransferase 604 cho1394 COG0449 M Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains 1624700 1626511 - Glucosamine-1-phosphate N-acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase 448 cho1395 COG1207 M N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) 1626515 1627858 - Tetracycline resistance protein, class A 404 cho1396 1628640 1629851 + DegT/DnrJ/EryC1/StrS aminotransferase 398 cho1398 COG0399 M Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 1629851 1631044 + 239 cho1397 1631041 1631757 - sensory box histidine kinase/response regulator 892 cho1399 1631875 1634550 - hypothetical protein Csal_2668 185 cho1400 1634587 1635141 - two component transcriptional regulator, LuxR family 206 cho1401 1635384 1636001 + isovaleryl-CoA dehydrogenase 397 cho1402 1636554 1637744 + 167 cho1403 1637744 1638244 + glutathione S-transferase-like 215 cho1407 1641912 1642556 + hydroxymethylglutaryl-CoA lyase 296 cho1408 COG0119 E Isopropylmalate/homocitrate/citramalate synthases 1642525 1643412 + Enoyl-CoA hydratase/isomerase 261 cho1409 1643408 1644190 + NADH-quinone oxidoreductase chain A 126 cho1410 COG0838 C NADH:ubiquinone oxidoreductase subunit 3 (chain A) 1644457 1644834 + NADH dehydrogenase beta subunit 177 cho1411 COG0377 C NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 1644828 1645358 + NADH (or F420H2) dehydrogenase, subunit C 199 cho1412 COG0852 C NADH:ubiquinone oxidoreductase 27 kD subunit 1645373 1645969 + NADH dehydrogenase I, D subunit 413 cho1413 COG0649 C NADH:ubiquinone oxidoreductase 49 kD subunit 7 1646018 1647256 + NADH-quinone oxidoreductase, E subunit 389 cho1414 COG1905 C NADH:ubiquinone oxidoreductase 24 kD subunit 1647259 1648425 + 147 cho1415 1648528 1648968 + NADH dehydrogenase-ubiquinone oxidoreductase, chain F 431 cho1416 COG1894 C NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 1649164 1650456 + 158 cho1417 1650466 1650939 + hypothetical protein SYNW2410 257 cho1418 1651223 1651993 + NADH-quinone oxidoreductase, chain G 665 cho1419 COG1034 C NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) 1652054 1654048 + lipoprotein, putative 135 cho1420 1654055 1654459 + NADH dehydrogenase subunit H 345 cho1421 COG1005 C NADH:ubiquinone oxidoreductase subunit 1 (chain H) 1654496 1655530 + 95 cho1422 1655530 1655814 + NADH dehydrogenase subunit I 163 cho1423 COG1143 C Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 1655817 1656305 + possible carboxymuconolactone decarboxylase family protein 136 cho1424 COG0599 S Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 1656305 1656712 + NADH-quinone oxidoreductase chain J 202 cho1425 COG0839 C NADH:ubiquinone oxidoreductase subunit 6 (chain J) 1656712 1657317 + NADH-quinone oxidoreductase chain K 102 cho1426 COG0713 C NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 1657364 1657669 + proton-translocating NADH-quinone oxidoreductase, chain L 712 cho1427 COG1009 CP NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 1657677 1659812 + NADH dehydrogenase subunit M 512 cho1428 COG1008 C NADH:ubiquinone oxidoreductase subunit 4 (chain M) 1659815 1661350 + NADH-quinone oxidoreductase chain N 478 cho1429 COG1007 C NADH:ubiquinone oxidoreductase subunit 2 (chain N) 1661366 1662799 + Biotin--acetyl-CoA-carboxylase ligase 271 cho1430 COG0340 H Biotin-(acetyl-CoA carboxylase) ligase 1662735 1663547 + Putative transcriptional regulator 258 cho1431 COG1521 K Putative transcriptional regulator, homolog of Bvg accessory factor 1663560 1664333 + Predicted hydrolase of the metallo-beta-lactamase superfamily 558 cho1432 COG0595 R Predicted hydrolase of the metallo-beta-lactamase superfamily 1664333 1666006 + hypothetical protein RSP_0238 428 cho1433 1666197 1667480 + acetolactate synthase, small subunit 186 cho1434 COG0440 E Acetolactate synthase, small (regulatory) subunit 1667706 1668263 - acetolactate synthase, large subunit 611 cho1435 COG0028 EH Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 1668348 1670180 - hypothetical protein mll5171 190 cho1436 1670691 1671260 + TRAP-T family sorbitol/mannitol transporter, DctM (12TMs) subunit 611 cho1437 1671263 1673095 + medium-chain-fatty-acid--CoA ligase 547 cho1438 1673530 1675170 + Peptide chain release factor 2 386 cho1439 COG1186 J Protein chain release factor B 1675231 1676388 + hypothetical protein Mfla_2665 210 cho1440 1676318 1676947 + hypothetical protein SPO2231 168 cho1441 COG1664 M Integral membrane protein CcmA involved in cell shape determination 1677150 1677653 - peptidase, M23/M37 family, putative 454 cho1442 COG0739 M Membrane proteins related to metalloendopeptidases 1677646 1679007 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 158 cho1443 COG1225 O Peroxiredoxin 1679157 1679630 - hypothetical protein RSP_2972 1107 cho1444 1679730 1683050 + Queuosine biosynthesis protein 350 cho1445 COG0809 J S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 1683050 1684099 + Transporter, Major facilitator superfamily (MFS) 416 cho1446 1684127 1685374 + hypothetical protein SPO2224 187 cho1447 COG3803 S Uncharacterized protein conserved in bacteria 1685514 1686074 + dihydrolipoamide dehydrogenase 474 cho1448 COG1249 C Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 1686167 1687588 + 138 cho1449 COG0607 P Rhodanese-related sulfurtransferase 1687741 1688154 - excinuclease ABC, A subunit 957 cho1450 COG0178 L Excinuclease ATPase subunit 1688342 1691212 + possible methyltransferase 205 cho1451 1691212 1691826 + transcriptional regulator, Crp-Fnr family 218 cho1452 1692205 1692858 - 3-hydroxyisobutyrate dehydrogenase 290 cho1453 COG2084 I 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 1692915 1693784 - Enoyl-CoA hydratase/isomerase 346 cho1454 1693818 1694855 - acyl-CoA dehydrogenase 404 cho1455 1694855 1696066 - methylmalonate-semialdehyde dehydrogenase 499 cho1456 1696228 1697724 - Coenzyme A biosynthesis protein 164 cho1457 COG0669 H Phosphopantetheine adenylyltransferase 1698846 1699337 + amidophosphoribosyltransferase 488 cho1458 COG0034 F Glutamine phosphoribosylpyrophosphate amidotransferase 1699901 1701364 - putative Colicin V production protein, dedE 200 cho1460 COG1286 R Uncharacterized membrane protein, required for colicin V production 1701484 1702083 - DNA repair protein RadA 455 cho1461 COG1066 O Predicted ATP-dependent serine protease 1702108 1703472 - ABC transporter, ATPase subunit 247 cho1462 COG1127 Q ABC-type transport system involved in resistance to organic solvents, ATPase component 1703544 1704284 - ABC transporter, inner membrane subunit 259 cho1463 COG0767 Q ABC-type transport system involved in resistance to organic solvents, permease component 1704284 1705060 - alanine racemase 349 cho1464 COG0787 M Alanine racemase 1705060 1706106 - replicative DNA helicase 493 cho1465 COG0305 L Replicative DNA helicase 1706362 1707840 - orotate phosphoribosyltransferase 226 cho1466 COG0461 F Orotate phosphoribosyltransferase 1708085 1708762 - dihydroorotase, homodimeric type 346 cho1467 COG0418 F Dihydroorotase 1708869 1709906 - 78 cho1468 1710511 1710744 + 115 cho1469 1710839 1711183 + hypothetical protein TM1040_1775 321 cho1470 1711229 1712191 - glycosyl transferase, group 2 family protein 349 cho1471 1712351 1713397 - hypothetical protein SPO2649 796 cho1472 1713400 1715787 - 256 cho1473 1716033 1716800 + hypothetical protein TM1040_2837 436 cho1474 1716818 1718125 + hypothetical protein Jann_1007 358 cho1475 1718147 1719220 - 270 cho1476 1719220 1720029 - 335 cho1477 1720029 1721033 - ErfK/YbiS/YcfS/YnhG 195 cho1478 1721482 1722066 - Translation initiation factor IF-3 141 cho1479 COG0290 J Translation initiation factor 3 (IF-3) 1722251 1722673 - NADPH-ferredoxin reductase 296 cho1480 1724104 1724991 - hypothetical protein TM1040_1760 128 cho1481 1725073 1725456 - phosphoadenosine phosphosulfate reductase 254 cho1482 COG0175 EH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes 1725456 1726217 - sulfite reductase 553 cho1483 COG0155 P Sulfite reductase, beta subunit (hemoprotein) 1726210 1727868 - 104 cho1484 1727864 1728175 - uroporphyrin-III C-methyltransferase 263 cho1485 COG0007 H Uroporphyrinogen-III methylase 1728175 1728963 - Transcriptional Regulator, AsnC family 153 cho1486 COG1522 K Transcriptional regulators 1729093 1729551 + Triosephosphate isomerase 247 cho1487 COG0149 G Triosephosphate isomerase 1729710 1730450 - HesB-like iron-sulfur cluster assembly protein, putative 119 cho1488 COG0316 S Uncharacterized conserved protein 1730523 1730879 - Putative NADH-flavin oxidoreductase 357 cho1489 COG1902 C NADH:flavin oxidoreductases, Old Yellow Enzyme family 1730953 1732023 - hypothetical protein RSP_1949 121 cho1490 COG2151 R Predicted metal-sulfur cluster biosynthetic enzyme 1732142 1732504 - Probable queuine tRNA ribosyltransferase 375 cho1492 COG0343 J Queuine/archaeosine tRNA-ribosyltransferase 1732907 1734031 + Hly-III related proteins 214 cho1491 COG1272 R Predicted membrane protein, hemolysin III homolog 1734034 1734675 - pantothenate kinase protein 227 cho1493 COG1072 H Panthothenate kinase 1734871 1735551 - 387 cho1494 COG0565 J rRNA methylase 1735824 1736984 + 249 cho1495 1737263 1738009 + cytochrome c oxidase assembly protein, putative 394 cho1496 1738041 1739222 + thermostable carboxypeptidase, putative 489 cho1497 COG2317 E Zn-dependent carboxypeptidase 1739222 1740688 + hypothetical protein SPO1897 404 cho1498 1740829 1742040 - peptidase, M48 family 229 cho1499 1742103 1742789 - hypothetical protein TM1040_0891 393 cho1500 1742841 1744019 - hypothetical protein Jann_2684 400 cho1501 1744069 1745268 - hypothetical protein RSP_2768 323 cho1502 COG1410 E Methionine synthase I, cobalamin-binding domain 1746039 1747007 - 5,10-methylenetetrahydrofolate reductase, putative 296 cho1503 COG0685 E 5,10-methylenetetrahydrofolate reductase 1747014 1747901 - 107 cho1504 1747904 1748224 - putative Exopolyphosphatase 376 cho1505 COG0248 FP Exopolyphosphatase 1748622 1749749 + ribosomal RNA methyltransferase RrmJ/FtsJ 259 cho1506 COG0293 J 23S rRNA methylase 1749749 1750525 + putative GAF sensor protein 324 cho1507 COG3284 QK Transcriptional activator of acetoin/glycerol metabolism 1750625 1751596 + Aldehyde dehydrogenase (NAD+) 508 cho1508 1751957 1753480 + putative methyl accepting chemotaxis protein 734 cho1509 1753695 1755896 + hypothetical protein CC1036 171 cho1510 COG2862 S Predicted membrane protein 1755960 1756472 - Probable tRNA delta(2)-isopentenylpyrophosphate transferase 314 cho1511 COG0324 J tRNA delta(2)-isopentenylpyrophosphate transferase 1757547 1758488 - uridylate kinase, putative 243 cho1512 COG0528 F Uridylate kinase 1758530 1759258 + ribosome recycling factor 187 cho1513 COG0233 J Ribosome recycling factor 1759367 1759927 + Undecaprenyl pyrophosphate synthase 251 cho1514 COG0020 I Undecaprenyl pyrophosphate synthase 1759948 1760700 + phosphatidate cytidylyltransferase 264 cho1515 COG0575 I CDP-diglyceride synthetase 1760700 1761491 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase 390 cho1516 COG0743 I 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1761498 1762667 + Peptidase M50, putative membrane-associated zinc metallopeptidase 436 cho1517 COG0750 M Predicted membrane-associated Zn-dependent proteases 1 1762701 1764008 + 57 cho1518 1764105 1764275 + putative outer membrane protein 800 cho1519 COG4775 M Outer membrane protein/protective antigen OMA87 1764400 1766799 + 191 cho1520 1766863 1767435 + probable 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase 153 cho1521 COG0764 I 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 1767543 1768001 + acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 264 cho1522 COG1043 M Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 1768007 1768798 + hypothetical protein RSP_2715 247 cho1523 1768857 1769597 + lipid-A-disaccharide synthase 388 cho1525 COG0763 M Lipid A disaccharide synthetase 1769582 1770745 + LamB/YcsF 245 cho1524 COG1540 R Uncharacterized proteins, homologs of lactam utilization protein B 1770739 1771473 - Allophanate hydrolase subunit 2 337 cho1526 COG1984 E Allophanate hydrolase subunit 2 1771473 1772483 - Allophanate hydrolase subunit 1 239 cho1527 COG2049 E Allophanate hydrolase subunit 1 1772483 1773199 - hypothetical protein SMc04058 294 cho1528 COG1305 E Transglutaminase-like enzymes, putative cysteine proteases 1773199 1774080 - hypothetical protein RHE_CH03590 807 cho1529 1774087 1776507 - Transglutaminase-like 1142 cho1530 1776531 1779956 - 1028 cho1532 1779937 1783020 + amino acid ABC transporter, periplasmic substrate-binding protein, putative 301 cho1531 1783023 1783925 - cytochrome c550, putative 250 cho1533 1783925 1784674 - putative ABC transporter periplasmic solute-binding protein 326 cho1534 1784806 1785783 + aliphatic sulfonates transport permease protein, putative 272 cho1535 1785795 1786610 + 214 cho1536 1786559 1787200 + hypothetical protein SMb20185 263 cho1537 1787433 1788221 - ABC transporter, ATP-binding protein, putative 266 cho1538 1788221 1789018 - hypothetical protein SPO1512 141 cho1539 1788960 1789382 - hypothetical protein SPO1513 320 cho1540 1789394 1790353 - hypothetical protein SPO1514 389 cho1541 1790353 1791519 - 180 cho1542 COG0790 R FOG: TPR repeat, SEL1 subfamily 1791637 1792176 + cytochrome c family protein 128 cho1543 COG3474 C Cytochrome c2 1792293 1792676 + quinoprotein ethanol dehydrogenase 589 cho1544 1793037 1794803 + DNA-binding response regulator, LuxR family 239 cho1545 1794963 1795679 + hypothetical protein RSP_2881 416 cho1546 1795648 1796895 + signal transduction histidine kinase 745 cho1548 1796905 1799139 + tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 354 cho1547 COG0482 J Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 1799135 1800196 - two component transcriptional regulator, winged helix family 237 cho1550 1800769 1801479 + DNA ligase, NAD-dependent 707 cho1551 COG0272 L NAD-dependent DNA ligase (contains BRCT domain type II) 1801546 1803666 + methyl-accepting chemotaxis protein, putative 470 cho1553 1806069 1807478 - hypothetical protein RD1_2606 142 cho1554 COG0822 C NifU homolog involved in Fe-S cluster formation 1807544 1807969 - phosphoribosyl-AMP cyclohydrolase 120 cho1555 COG0139 E Phosphoribosyl-AMP cyclohydrolase 1808027 1808386 + 176 cho1556 1808705 1809232 + 284 cho1557 COG0063 G Predicted sugar kinase 1809327 1810178 - Nitrogen regulatory protein P-II 112 cho1559 COG0347 E Nitrogen regulatory protein PII 1811055 1811390 + Glutamine synthetase class-I 469 cho1560 COG0174 E Glutamine synthetase 1811475 1812881 + malonyl CoA-acyl carrier protein transacylase 309 cho1561 COG0331 I (acyl-carrier-protein) S-malonyltransferase 1813102 1814028 + oxidoreductase, short chain dehydrogenase/reductase family 245 cho1562 1814112 1814846 + acyl carrier protein 77 cho1563 COG0236 IQ Acyl carrier protein 1815053 1815283 + 171 cho1564 COG1514 J 2'-5' RNA ligase 1815353 1815865 + 3-oxoacyl-(acyl carrier protein) synthase 420 cho1565 1815991 1817250 + hypothetical protein RD1_3035 390 cho1566 COG1559 R Predicted periplasmic solute-binding protein 1817250 1818419 + phage portal protein, putative 396 cho1568 COG4695 S Phage-related protein 1820421 1821608 + 77 cho1569 1821615 1821845 + phage prohead protease, putative 184 cho1570 1821859 1822410 + Predicted phage phi-C31 gp36 major capsid-like protein 398 cho1571 1822445 1823638 + 112 cho1573 1824404 1824739 + major tail protein, TP901-1 family 137 cho1575 1825187 1825597 + 108 cho1576 1825608 1825931 + 75 cho1577 1825931 1826155 + putative phage tail minor protein 219 cho1578 1826145 1826801 + hypothetical protein RD1_3018 296 cho1580 1827447 1828334 + hypothetical protein RD1_3017 150 cho1581 1828334 1828783 + hypothetical protein RD1_3016 1304 cho1582 1828787 1832698 + 138 cho1583 1832705 1833118 + serine acetyltransferase 272 cho1584 COG1045 E Serine acetyltransferase 1833063 1833878 + Phospholipid/glycerol acyltransferase 219 cho1585 COG0204 I 1-acyl-sn-glycerol-3-phosphate acyltransferase 1833890 1834546 + phosphatidate cytidylyltransferase 312 cho1586 1834546 1835481 + pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 418 cho1587 COG0508 C Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 1835541 1836794 - dihydrolipoamide acetyltransferase 449 cho1588 COG0022 C Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 1836805 1838151 - pyruvate dehydrogenase complex, E1 component, alpha subunit 334 cho1589 COG1071 C Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 1838167 1839168 - 99 cho1590 1839304 1839600 - Fructose-bisphosphate aldolase 294 cho1591 1839728 1840609 - phosphoglycerate kinase 396 cho1592 COG0126 G 3-phosphoglycerate kinase 1840787 1841974 - Peptidylprolyl isomerase 168 cho1593 COG0652 O Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 1842184 1842687 + Peptidyl-prolyl cis-trans isomerase b 193 cho1594 COG0652 O Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 1842683 1843261 + tyrosyl-tRNA synthetase 416 cho1595 COG0162 J Tyrosyl-tRNA synthetase 1843415 1844662 - protein of unknown function UPF0075 380 cho1596 COG2377 O Predicted molecular chaperone distantly related to HSP70-fold metalloproteases 1844722 1845861 + 84 cho1597 1846019 1846270 + hypothetical protein RSP_2490 142 cho1598 1846277 1846702 - enolase 424 cho1599 COG0148 G Enolase 1846830 1848101 - integral membrane protein, putative 296 cho1600 1848220 1849107 - hypothetical protein BCE_3522 473 cho1601 COG0397 S Uncharacterized conserved protein 1849170 1850588 - ABC transporter ATP-binding protein yheS, putative 646 cho1602 COG0488 R ATPase components of ABC transporters with duplicated ATPase domains 1851655 1853592 - Nucleoside diphosphate kinase 140 cho1603 COG0105 F Nucleoside diphosphate kinase 1853717 1854136 + 115 cho1604 1854166 1854510 - Transcriptional regulator 168 cho1605 COG1959 K Predicted transcriptional regulator 1854996 1855499 - Cytochrome-c peroxidase 349 cho1606 COG1858 P Cytochrome c peroxidase 1855729 1856775 - Hydrolase arginase family 325 cho1607 COG0010 E Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 1856944 1857918 + hypothetical protein SMb21468 344 cho1608 1858009 1859040 + methyl-accepting chemotaxis protein McpH 686 cho1609 1859106 1861163 - putative pyruvate oxidoreductase 1209 cho1610 1862262 1865888 - pyridine nucleotide-disulphide oxidoreductase family protein 547 cho1611 COG0493 ER NADPH-dependent glutamate synthase beta chain and related oxidoreductases 1865884 1867524 - putative protease 312 cho1612 COG0826 O Collagenase and related proteases 1867842 1868777 - putative protease 326 cho1613 COG0826 O Collagenase and related proteases 1868791 1869768 - hypothetical protein RSP_0466 182 cho1614 COG3154 I Putative lipid carrier protein 1869768 1870313 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 503 cho1615 COG0043 H 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases 1870452 1871960 + putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 189 cho1617 COG0163 H 3-polyprenyl-4-hydroxybenzoate decarboxylase 1871960 1872526 + 399 cho1616 COG3213 P Uncharacterized protein involved in response to NO 1872508 1873704 - 317 cho1618 1873861 1874811 + transcriptional regulator, LysR family 304 cho1619 1875057 1875968 - catalase-peroxidase KatB 722 cho1620 COG0376 P Catalase (peroxidase I) 1876067 1878232 + 61 cho1621 1878432 1878614 + ABC transporter related 605 cho1622 COG0488 R ATPase components of ABC transporters with duplicated ATPase domains 1878843 1880657 + L-carnitine dehydratase/bile acid-inducible protein F 367 cho1624 COG1804 C Predicted acyl-CoA transferases/carnitine dehydratase 1881078 1882178 + 27 kDa outer membrane protein, putative 248 cho1625 COG1651 O Protein-disulfide isomerase 1882228 1882971 - aminotransferase, class I and II 379 cho1626 COG0436 E Aspartate/tyrosine/aromatic aminotransferase 1883121 1884257 + Probable N-acetylmuramoyl-L-alanine amidase 405 cho1627 COG0860 M N-acetylmuramoyl-L-alanine amidase 1884315 1885529 + 97 cho1628 1885825 1886115 + acetate permease 551 cho1629 COG4147 R Predicted symporter 1886127 1887779 + NOL1/NOP2/sun family protein 389 cho1630 COG0144 J tRNA and rRNA cytosine-C5-methylases 1887974 1889140 + sensor kinase-like protein, putative 767 cho1631 1889278 1891578 + hypothetical protein RSP_0453 197 cho1632 1891591 1892181 - recombinase A 355 cho1633 COG0468 L RecA/RadA recombinase 1892425 1893489 + alanyl-tRNA synthetase 884 cho1634 COG0013 J Alanyl-tRNA synthetase 1893632 1896283 + hypothetical protein RSP_0450 96 cho1635 COG5470 S Uncharacterized conserved protein 1896286 1896573 + putative glutamine amidotransferase 264 cho1636 COG0121 R Predicted glutamine amidotransferase 1896664 1897455 + cysteinyl-tRNA synthetase 460 cho1637 COG0215 J Cysteinyl-tRNA synthetase 1897526 1898905 + 2-isopropylmalate synthase/homocitrate synthase 540 cho1638 COG0119 E Isopropylmalate/homocitrate/citramalate synthases 1898908 1900527 + hypothetical protein TM1040_1155 253 cho1639 1900527 1901285 + protein-glutamate methylesterase protein 348 cho1641 COG2201 NT Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 1904523 1905566 + chemotaxis protein CheD, putative 171 cho1642 COG1871 NT Chemotaxis protein; stimulates methylation of MCP proteins 1905572 1906084 + 129 cho1643 1906290 1906676 - chemotaxis response regulator CheY 128 cho1644 1906676 1907059 - chemotaxis methyltransferase 292 cho1645 COG1352 NT Methylase of chemotaxis methyl-accepting proteins 1907053 1907928 - chemotaxis protein CheW 155 cho1646 COG0835 NT Chemotaxis signal transduction protein 1907928 1908392 - chemotaxis protein CheY, putative 121 cho1649 1910616 1910978 - putative glucokinase 325 cho1650 COG0837 G Glucokinase 1911401 1912375 - beta-glucosidase A 442 cho1651 1912380 1913705 - transcriptional regulator, LacI family 349 cho1652 1913705 1914751 - ABC alpha-glucoside transporter, perplasmic substrate-binding protein 499 cho1653 1914880 1916376 + ABC alpha-glucoside transporter, inner membrane subunit AglF 336 cho1654 1916436 1917443 + binding-protein-dependent transport systems inner membrane component 382 cho1655 1917443 1918588 + alpha amylase, catalytic region 541 cho1656 COG0366 G Glycosidases 1918592 1920214 + ABC alpha-glucoside transporter, ATPase subunit AglK 361 cho1657 1920210 1921292 + putative trimethylamine methyltransferase protein 518 cho1658 COG5598 H Trimethylamine:corrinoid methyltransferase 1921366 1922919 + TIM-barrel protein, yjbN family 346 cho1659 COG0042 J tRNA-dihydrouridine synthase 1923129 1924166 + protein of unknown function DUF81 271 cho1660 COG0730 R Predicted permeases 1924171 1924983 + mazG family protein 276 cho1661 1925034 1925861 - Protein-export membrane protein secD 554 cho1664 COG0342 U Preprotein translocase subunit SecD 1927620 1929281 + protein-export membrane protein SecF 333 cho1665 COG0341 U Preprotein translocase subunit SecF 1929297 1930295 + 124 cho1666 1930285 1930656 + heme exporter protein CcmA 214 cho1667 1930656 1931297 + heme exporter protein CcmB 218 cho1668 COG2386 O ABC-type transport system involved in cytochrome c biogenesis, permease component 1931419 1932072 + heme exporter protein CcmC 242 cho1669 COG0755 O ABC-type transport system involved in cytochrome c biogenesis, permease component 1932159 1932884 + Hypoxanthine-guanine phosphoribosyltransferase 182 cho1671 COG0634 F Hypoxanthine-guanine phosphoribosyltransferase 1933622 1934167 - hypothetical protein RSP_2787 156 cho1672 COG2867 I Oligoketide cyclase/lipid transport protein 1934249 1934716 + ammonium transporter 392 cho1673 COG0004 P Ammonia permease 1934795 1935970 - CinA-like 155 cho1674 COG1546 R Uncharacterized protein (competence- and mitomycin-induced) 1936128 1936592 - Putative Phosphatidylglycerophosphatase A 164 cho1675 COG1267 I Phosphatidylglycerophosphatase A and related proteins 1936592 1937083 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 379 cho1676 COG0245 I 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1937088 1938224 - nifR3-like protein 306 cho1677 COG0042 J tRNA-dihydrouridine synthase 1938472 1939389 + Nitrogen regulation protein, NtrB signal transduction histidine kinase 355 cho1678 COG3852 T Signal transduction histidine kinase, nitrogen specific 1939389 1940453 + two component, sigma54 specific, transcriptional regulator, Fis family 458 cho1679 1940460 1941833 + nitrogen regulation protein ntrY, putative 749 cho1680 1941913 1944159 + nitrogen assimilation regulatory protein 476 cho1681 COG2204 T Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 1944159 1945586 + Putative GTP-binding protein 545 cho1682 COG2262 R GTPases 1945652 1947286 + putative penicillin acylase (penicillin amidase) 823 cho1683 COG2366 R Protein related to penicillin acylase 1947379 1949847 - 3-hydroxyisobutyrate dehydrogenase 323 cho1684 COG2084 I 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 1949846 1950814 + single-strand binding protein 175 cho1685 COG0629 L Single-stranded DNA-binding protein 1950997 1951521 - putative lytic transglycosylase 206 cho1686 COG0741 M Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 1951713 1952330 + hypothetical protein RSP_2847 185 cho1687 1952413 1952967 - delta-aminolevulinic acid dehydratase 332 cho1688 COG0113 H Delta-aminolevulinic acid dehydratase 1953079 1954074 - transcription-repair coupling factor 1148 cho1690 COG1197 LK Transcription-repair coupling factor (superfamily II helicase) 1954786 1958229 + drug resistance transporter, Bcr/CflA subfamily 405 cho1691 1958242 1959456 - DSBA-like thioredoxin domain protein 207 cho1692 COG2761 Q Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 1959551 1960171 - benzoate-coenzyme A ligase, putative 512 cho1693 1960171 1961706 - 148 cho1694 1961775 1962218 - putative oligopeptide ABC transporter, periplasmic-binding protein 607 cho1695 COG4166 E ABC-type oligopeptide transport system, periplasmic component 1962303 1964123 - 3-hydroxybutyrate dehydrogenase 257 cho1696 1964387 1965157 + protein of unknown function DUF502 241 cho1697 COG2928 S Uncharacterized conserved protein 1965255 1965977 - Indigoidine synthase A like protein 305 cho1698 COG2313 Q Uncharacterized enzyme involved in pigment biosynthesis 1966040 1966954 - PfkB 298 cho1699 1966954 1967847 - 30S ribosomal protein S2 251 cho1700 COG0052 J Ribosomal protein S2 1968162 1968914 + elongation factor Ts 302 cho1701 COG0264 J Translation elongation factor Ts 1968989 1969894 + autoinducer-binding transcriptional regulator, LuxR family 250 cho1702 1970233 1970982 - 145 cho1703 COG3453 S Uncharacterized protein conserved in bacteria 1971162 1971596 - CbbY family protein 227 cho1704 COG0637 R Predicted phosphatase/phosphohexomutase 1971660 1972340 - phosphoglycolate phosphatase 223 cho1705 COG0546 R Predicted phosphatases 1972334 1973002 - Redoxin domain protein 183 cho1706 1972993 1973541 - Ribulose-phosphate 3-epimerase 228 cho1707 COG0036 G Pentose-5-phosphate-3-epimerase 1973552 1974235 - Ribulose bisphosphate carboxylase, large chain, form II 458 cho1708 COG1850 G Ribulose 1,5-bisphosphate carboxylase, large subunit 1974293 1975666 - Fructose-bisphosphate aldolase II 354 cho1709 COG0191 G Fructose/tagatose bisphosphate aldolase 1975688 1976749 - glyceraldehyde-3-phosphate dehydrogenase 333 cho1710 COG0057 G Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 1976832 1977830 - transketolase 657 cho1711 COG0021 G Transketolase 1977842 1979812 - Phosphoribulokinase 292 cho1712 1979899 1980774 - fructose-1,6-bisphosphatase 331 cho1713 COG0158 G Fructose-1,6-bisphosphatase 1980782 1981774 - RuBisCO operon transcriptional regulator, CbbR 313 cho1714 1981867 1982805 + NAD(P)H -dependent quinone oxidoreductase 323 cho1715 1982890 1983858 + phosphoglucomutase 541 cho1716 COG0033 G Phosphoglucomutase 1983964 1985586 - Glycogen debranching enzyme GlgX 674 cho1717 COG1523 G Type II secretory pathway, pullulanase PulA and related glycosidases 1985586 1987607 - glycogen synthase 477 cho1718 COG0297 G Glycogen synthase 1987607 1989037 - glucose-1-phosphate adenylyltransferase 423 cho1719 COG0448 G ADP-glucose pyrophosphorylase 1989098 1990366 - 1,4-alpha-glucan branching enzyme 722 cho1720 COG0296 G 1,4-alpha-glucan branching enzyme 1990388 1992553 - glycogen phosphorylase 796 cho1721 COG0058 G Glucan phosphorylase 1992567 1994954 - Alpha amylase, catalytic subdomain 528 cho1722 COG0366 G Glycosidases 1995107 1996690 + phosphate regulon sensor protein, putative 343 cho1723 1996835 1997863 - 132 cho1724 1998025 1998420 + transferase hexapeptide protein 172 cho1725 COG0663 R Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 1998427 1998942 - Probable Guanylate kinase 214 cho1726 COG0194 F Guanylate kinase 1998942 1999583 - yicC family protein 306 cho1727 COG1561 S Uncharacterized stress-induced protein 1999590 2000507 - hypothetical protein RD1_2636 253 cho1728 2000708 2001466 + phospho-2-dehydro-3-deoxyheptonate 456 cho1729 COG3200 E 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 2001544 2002911 - Transcriptional regulator, AraC family 371 cho1730 2003077 2004189 + Extracellular ligand-binding receptor 394 cho1731 COG0683 E ABC-type branched-chain amino acid transport systems, periplasmic component 2004319 2005500 + ABC transporter related 262 cho1732 COG0411 E ABC-type branched-chain amino acid transport systems, ATPase component 2005612 2006397 + ABC branched-chain amino acid transporter family, ATPase subunit 234 cho1733 COG0410 E ABC-type branched-chain amino acid transport systems, ATPase component 2006397 2007098 + 126 cho1734 2007103 2007480 + inner-membrane translocator 449 cho1736 COG4177 E ABC-type branched-chain amino acid transport system, permease component 2008487 2009833 + GMP synthase 503 cho1737 COG0519 F GMP synthase, PP-ATPase domain/subunit 2010288 2011796 + 3-dehydroquinate synthase 368 cho1738 COG0337 E 3-dehydroquinate synthetase 2011863 2012966 - shikimate kinase, putative 187 cho1739 COG0703 E Shikimate kinase 2012970 2013530 - hypothetical protein TM1040_1429 605 cho1740 2013722 2015536 + tyrosine recombinase XerD 318 cho1741 COG4974 L Site-specific recombinase XerD 2015536 2016489 + Hypothetical protein with CBS domain 449 cho1742 2016526 2017872 + lipoic acid synthetase 320 cho1743 COG0320 H Lipoate synthase 2017882 2018841 - hypothetical protein RSP_6073 379 cho1744 2018919 2020055 - 102 cho1745 2020281 2020586 + hypothetical protein RD1_2625 515 cho1746 COG0433 R Predicted ATPase 2020614 2022158 - hypothetical protein RSP_2778 198 cho1747 COG5342 R Invasion protein B, involved in pathogenesis 2022604 2023197 + beta-ketoacyl synthase family protein 404 cho1748 COG0304 IQ 3-oxoacyl-(acyl-carrier-protein) synthase 2023261 2024472 - 91 cho1749 COG0236 IQ Acyl carrier protein 2024472 2024744 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 366 cho1750 COG1044 M UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2024755 2025852 - hypothetical protein RSP_2774 540 cho1751 COG2989 S Uncharacterized protein conserved in bacteria 2025904 2027523 - hypothetical protein RSP_2773 167 cho1752 COG3108 S Uncharacterized protein conserved in bacteria 2027876 2028376 + putative selenocysteine lyase 406 cho1753 COG0520 E Selenocysteine lyase 2028691 2029908 - 196 cho1754 2029920 2030507 - 162 cho1755 2030507 2030992 - SufBD 422 cho1756 COG0719 O ABC-type transport system involved in Fe-S cluster assembly, permease component 2031006 2032271 - FeS assembly ATPase SufC 255 cho1757 COG0396 O ABC-type transport system involved in Fe-S cluster assembly, ATPase component 2032274 2033038 - hypothetical protein SPO2022 197 cho1758 2033072 2033662 - putative SufB 504 cho1759 COG0719 O ABC-type transport system involved in Fe-S cluster assembly, permease component 2033676 2035187 - putative aminotransferase 383 cho1760 COG1104 E Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 2035210 2036358 - 240 cho1761 COG1959 K Predicted transcriptional regulator 2036398 2037117 - hypothetical protein RSP_0444 219 cho1762 COG2945 R Predicted hydrolase of the alpha/beta superfamily 2037064 2037720 + 75 cho1763 2037725 2037949 + hypothetical protein RSP_0445 203 cho1764 COG1896 R Predicted hydrolases of HD superfamily 2037949 2038557 + isocitrate dehydrogenase 404 cho1765 COG0538 C Isocitrate dehydrogenases 2038653 2039864 + 78 cho1766 2039948 2040181 - hypothetical protein RSP_0447 210 cho1767 COG1284 S Uncharacterized conserved protein 2040554 2041183 + hypothetical protein SMc02240 203 cho1768 COG1284 S Uncharacterized conserved protein 2041226 2041834 + 110 cho1769 COG2076 P Membrane transporters of cations and cationic drugs 2041837 2042166 + EF-Tu; elongation factor Tu 605 cho1770 COG1217 T Predicted membrane GTPase involved in stress response 2042239 2044053 + ABC spermidine/putrescine transporter, ATPase subunit 375 cho1771 2044236 2045360 - ABC spermidine/putrescine transporter, inner membrane subunit 268 cho1772 2045360 2046163 - ABC spermidine/putrescine transporter, inner membrane subunit 292 cho1773 2046163 2047038 - 285 cho1775 2048988 2049842 - 269 cho1776 2049967 2050773 - Putative LysE/RhtB family amino acid efflux pump 207 cho1778 2059601 2060221 - 162 cho1780 2060226 2060711 - 177 cho1781 2061152 2061682 - hypothetical protein RSP_2616 145 cho1783 2062743 2063177 - hypothetical protein RSP_2615 235 cho1784 2063176 2063880 + possible 50S ribosomal protein L32 68 cho1785 COG0333 J Ribosomal protein L32 2064082 2064285 + fatty acid/phospholipid synthesis protein 399 cho1786 COG0416 I Fatty acid/phospholipid biosynthesis enzyme 2064304 2065500 + 3-oxoacyl-(acyl-carrier-protein) synthase III 324 cho1787 COG0332 I 3-oxoacyl-[acyl-carrier-protein] synthase III 2065500 2066471 + integration host factor, alpha subunit 100 cho1788 COG0776 L Bacterial nucleoid DNA-binding protein 2066586 2066885 + 77 cho1790 2068951 2069181 + 2,-deoxycytidine 5,-triphosphate deaminase 363 cho1791 COG0717 F Deoxycytidine deaminase 2069423 2070511 + inosine-5,-monophosphate dehydrogenase 482 cho1792 COG0516 F IMP dehydrogenase/GMP reductase 2070689 2072134 - Possible tellurite resistance protein 330 cho1793 2072206 2073195 - possible FemAB family protein 369 cho1794 2073304 2074410 - putative outer membrane protein 374 cho1795 2074674 2075795 + possible transporter, DME family, DMT superfamily 304 cho1796 2075911 2076822 + hypothetical protein RSP_0009 286 cho1797 2076851 2077708 + homoserine O-succinyltransferase 306 cho1798 COG1897 E Homoserine trans-succinylase 2077751 2078668 + site-specific recombinase, phage integrase family 533 cho1799 2078883 2080481 + transposase, IS4 92 cho1800 2080555 2080830 - 290 cho1801 2080982 2081851 - 180 cho1802 COG0328 L Ribonuclease HI 2081851 2082390 - 219 cho1803 2082390 2083046 - type I restriction enzyme subunit, putative 902 cho1804 COG4096 V Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 2083846 2086551 - type I restriction enzyme methyltransferase subunit, putative 482 cho1805 COG0286 V Type I restriction-modification system methyltransferase subunit 2087378 2088823 - site-specific recombinase, resolvase family 197 cho1806 2088895 2089485 - putative glycosyl transferase, family 4 365 cho1807 COG0472 M UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 2089986 2091080 - 177 cho1808 2091445 2091975 - phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 466 cho1809 COG1109 G Phosphomannomutase 2092173 2093570 + Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 477 cho1810 COG0836 M Mannose-1-phosphate guanylyltransferase 2093691 2095121 + 326 cho1811 2095129 2096106 + 268 cho1812 2096121 2096924 - hypothetical protein RHE_CH03389 597 cho1813 2096924 2098714 - 496 cho1814 COG2244 R Membrane protein involved in the export of O-antigen and teichoic acid 2098463 2099950 + 188 cho1815 2100120 2100683 + 454 cho1816 2100696 2102057 - polysaccharide pyruvyl transferase 398 cho1818 2102194 2103387 + 789 cho1817 2103362 2105728 - glycosyltransferase 381 cho1819 2105898 2107040 + wbfB protein 749 cho1820 2106910 2109156 + 220 cho1821 2109156 2109815 + Protein-tyrosine kinase 693 cho1822 2109852 2111930 - bacterial sugar transferase 232 cho1823 COG2148 M Sugar transferases involved in lipopolysaccharide synthesis 2112227 2112922 + 459 cho1824 COG1596 M Periplasmic protein involved in polysaccharide export 2113035 2114411 + 81 cho1825 2114448 2114690 - predicted Nucleoside-diphosphate-sugar epimerase 340 cho1826 2114788 2115807 - 392 cho1827 2115758 2116933 + 200 cho1828 2117433 2118032 - hypothetical protein SDY_0960 706 cho1829 2118032 2120149 - predicted acetyltransferase 730 cho1830 2120294 2122483 - Low molecular weight phosphotyrosine protein phosphatase 142 cho1831 COG0394 T Protein-tyrosine-phosphatase 2122593 2123018 - Polysaccharide export protein 358 cho1832 COG1596 M Periplasmic protein involved in polysaccharide export 2123027 2124100 - glutamyl-tRNA synthetase, class Ic 278 cho1833 COG0008 J Glutamyl- and glutaminyl-tRNA synthetases 2124200 2125033 - glucose-inhibited division protein A 445 cho1834 COG1206 J NAD(FAD)-utilizing enzyme possibly involved in translation 2125033 2126367 - hypothetical protein TM1040_1333 116 cho1835 2126438 2126785 - 234 cho1836 2126849 2127550 - DNA gyrase subunit A 930 cho1837 COG0188 L Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 2127583 2130372 - disulfide bond formation protein, putative 161 cho1838 COG1495 O Disulfide bond formation protein DsbB 2130485 2130967 - hypothetical protein BR1641 194 cho1839 COG1238 S Predicted membrane protein 2130973 2131554 - protein of unknown function, zinc metallopeptidase putative 302 cho1840 COG2321 R Predicted metalloprotease 2131694 2132599 + hypothetical protein TM1040_0779 197 cho1841 2133208 2133798 - 65 cho1842 2133868 2134062 - 69 cho1843 2134062 2134268 - hypothetical protein RSP_3610 97 cho1844 2134357 2134647 - 72 cho1845 2134720 2134935 - NAD-dependent DNA ligase (contains BRCT domain type II) 204 cho1846 COG0272 L NAD-dependent DNA ligase (contains BRCT domain type II) 2135149 2135760 - 119 cho1847 2136350 2136706 + 148 cho1848 2136706 2137149 + 109 cho1849 2137149 2137475 + hypothetical protein RSP_3776 221 cho1850 2137589 2138251 + 193 cho1851 2138428 2139006 + 303 cho1852 2139006 2139914 + hypothetical protein RSP_1652 124 cho1853 2140040 2140411 + 146 cho1854 2140537 2140974 + hypothetical protein RSP_1650 557 cho1855 COG4626 R Phage terminase-like protein, large subunit 2140961 2142631 + hypothetical protein RSP_1648 426 cho1856 COG4695 S Phage-related protein 2142631 2143908 + Periplasmic serine protease (ClpP class) 303 cho1857 COG0616 OU Periplasmic serine proteases (ClpP class) 2143915 2144823 + putative phage-related protein 447 cho1858 2144962 2146302 + 186 cho1859 2146360 2146917 + 310 cho1860 2146920 2147849 + 167 cho1861 2147849 2148349 + 49 cho1862 2148352 2148498 + hypothetical protein RSP_2064 122 cho1863 2148505 2148870 + hypothetical protein RSP_1639 146 cho1864 2148884 2149321 + 121 cho1865 2149321 2149683 + 78 cho1866 2149764 2149997 + hypothetical protein ebA5472 959 cho1867 2150051 2152927 + hypothetical protein TM1040_1610 312 cho1868 2152927 2153862 + 314 cho1869 2153865 2154806 + 106 cho1870 2155365 2155682 + 224 cho1871 2155687 2156358 + 115 cho1872 2156380 2156724 + 138 cho1873 COG0338 L Site-specific DNA methylase 2156881 2157294 + 1285 cho1874 2158339 2162193 + 516 cho1875 2162653 2164200 + PUTATIVE INTEGRASE DNA PROTEIN 402 cho1876 2164419 2165624 - trigger factor (TF), putative 444 cho1877 COG0544 O FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 2166008 2167339 + ribosomal protein S18 75 cho1879 COG0238 J Ribosomal protein S18 2168466 2168690 - Ribosomal protein S6 144 cho1880 COG0360 J Ribosomal protein S6 2168711 2169142 - protein of unknown function DUF6, transmembrane 362 cho1881 2169525 2170610 - 461 cho1882 2170489 2171871 - aldehyde dehydrogenase (NAD) 465 cho1883 2172013 2173407 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 280 cho1884 COG0179 Q 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 2173407 2174246 - inner-membrane translocator 357 cho1886 2175160 2176230 - hypothetical protein RSP_0089 225 cho1888 COG0637 R Predicted phosphatase/phosphohexomutase 2177486 2178160 + Operon regulator SmoC 314 cho1889 COG2390 K Transcriptional regulator, contains sigma factor-related N-terminal domain 2178160 2179101 + ABC sorbitol/mannitol transporter, periplasmic binding protein 437 cho1890 2179241 2180551 + ABC sorbitol/mannitol transporter, inner membrane subunit 290 cho1891 2180714 2181583 + ABC sorbitol/mannitol transporter, inner membrane subunit 276 cho1892 2181590 2182417 + ABC sorbitol/mannitol transporter, ATPase subunit 332 cho1893 2182430 2183425 + sorbitol dehydrogenase 253 cho1894 2183425 2184183 + Mannitol dehydrogenase 437 cho1895 COG0246 G Mannitol-1-phosphate/altronate dehydrogenases 2184344 2185654 + 117 cho1896 2186039 2186389 + Ferrous iron transport protein B 623 cho1897 COG0370 P Fe2+ transport system protein B 2186398 2188266 + ureidoglycolate hydrolase 161 cho1898 COG3194 F Ureidoglycolate hydrolase 2188500 2188982 - hypothetical protein Atu2314 412 cho1899 2189117 2190352 + cobyrinic acid a,c-diamide synthase 435 cho1900 COG1797 H Cobyrinic acid a,c-diamide synthase 2190598 2191902 - 828 cho1901 2191902 2194385 - ABC-type cobalt transport system 280 cho1902 COG1122 P ABC-type cobalt transport system, ATPase component 2194429 2195268 - ABC-type cobalt transport system 244 cho1903 COG0619 P ABC-type cobalt transport system, permease component CbiQ and related transporters 2195268 2195999 - 103 cho1904 2195999 2196307 - ABC-type Co2+ transport system 222 cho1905 COG0310 P ABC-type Co2+ transport system, permease component 2196310 2196975 - Precorrin-6A synthase, deacetylating 255 cho1906 2197301 2198065 - uroporphyrin-III C-methyltransferase, putative 242 cho1907 COG0007 H Uroporphyrinogen-III methylase 2198070 2198795 - precorrin-4 C11-methyltransferase 261 cho1908 COG2875 H Precorrin-4 methylase 2198795 2199577 - 110 cho1909 2199577 2199906 - precorrin-6y methyltransferase 396 cho1910 2199906 2201093 - precorrin-3B C(17)-methyltransferase 245 cho1911 COG1010 H Precorrin-3B methylase 2201823 2202557 - Putative precorrin-2 C20-methyltransferase 245 cho1912 COG2243 H Precorrin-2 methylase 2202557 2203291 - Precorrin-8X methylmutase 209 cho1913 COG2082 H Precorrin isomerase 2203298 2203924 - cobaltochelatase 1085 cho1914 COG1429 H Cobalamin biosynthesis protein CobN and related Mg-chelatases 2203934 2207188 - CobW 348 cho1915 COG0523 R Putative GTPases (G3E family) 2207191 2208234 - hypothetical protein blr3262 125 cho1916 2208241 2208615 - cob(I)yrinic acid a,c-diamide adenosyltransferase 212 cho1917 COG2109 H ATP:corrinoid adenosyltransferase 2208957 2209592 + cobyric acid synthase 481 cho1919 COG1492 H Cobyric acid synthase 2209866 2211308 + nitroreductase family protein 207 cho1918 COG0778 C Nitroreductase 2211311 2211931 - Aminotransferase, class-I 320 cho1920 COG0079 E Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 2211924 2212883 - cobalamin biosynthesis protein 314 cho1921 COG1270 H Cobalamin biosynthesis protein CobD/CbiB 2212886 2213827 - hypothetical protein RSP_0788 265 cho1922 2213827 2214621 - 195 cho1923 COG0406 G Fructose-2,6-bisphosphatase 2214621 2215205 - adenosylcobinamide kinase 167 cho1924 COG2087 H Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 2215278 2215778 + Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 334 cho1925 COG2038 H NaMN:DMB phosphoribosyltransferase 2215784 2216785 + cobalamin 5,-phosphate synthase 271 cho1926 COG0368 H Cobalamin-5-phosphate synthase 2216740 2217552 + 643 cho1927 2217562 2219490 - 153 cho1928 2219684 2220142 - Molecular chaperone, DnaK 412 cho1929 COG0443 O Molecular chaperone 2220305 2221540 - Hemolysin-type calcium-binding region 1028 cho1930 2221630 2224713 - Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase 650 cho1931 COG2217 P Cation transport ATPase 2225204 2227153 - ABC transporter related 725 cho1932 2227292 2229466 + Type I secretion membrane fusion protein, HlyD 438 cho1933 2229466 2230779 + hypothetical protein Cag_1750 202 cho1934 2230833 2231438 + hypothetical protein Bpro_5533 923 cho1935 2231666 2234434 - TPR repeat 617 cho1936 2234723 2236573 + Glyceraldehyde-3-phosphate dehydrogenase, type I 335 cho1937 COG0057 G Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 2237554 2238558 + 542 cho1938 2238504 2240129 + putative sensory protein 416 cho1941 2242570 2243817 - diguanylate cyclase/phosphodiesterase 718 cho1942 2243936 2246089 - 131 cho1943 2246092 2246484 - 108 cho1944 2246521 2246844 - DNA topoisomerase IV subunit B 657 cho1945 COG0187 L Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 2247176 2249146 - hypothetical protein RD1_3521 354 cho1946 COG0647 G Predicted sugar phosphatases of the HAD superfamily 2249250 2250311 + MaoC family protein 146 cho1947 COG2030 I Acyl dehydratase 2250438 2250875 + Riboflavin kinase / FAD synthetase = FMN adenylyltransferase, RibF 307 cho1948 COG0196 H FAD synthase 2250919 2251839 + hypothetical protein RSP_2303 149 cho1949 COG2983 S Uncharacterized conserved protein 2251885 2252331 + low-specificity L-threonine aldolase 349 cho1950 COG2008 E Threonine aldolase 2252335 2253381 + Integrase/recombinase 365 cho1951 2253579 2254673 - 66 cho1952 2254869 2255066 + IS3 family transposase orfA 118 cho1953 2255103 2255456 + insertion element hypothetical protein 209 cho1954 COG2801 L Transposase and inactivated derivatives 2255765 2256391 + 35 cho1956 2256458 2256562 - 217 cho1955 2256409 2257059 - 124 cho1957 2257052 2257423 - 58 cho1958 2257506 2257679 - 167 cho1959 2258179 2258679 - putative insertion sequence transposase protein 427 cho1960 2258662 2259942 + 135 cho1961 2261116 2261520 + Transposase, IS3/IS911family 140 cho1962 2261740 2262159 - 137 cho1963 2262266 2262676 - 548 cho1964 2265652 2267295 - 253 cho1965 2267298 2268056 - protein of unknown function DUF411 156 cho1966 2268607 2269074 - Twin-arginine translocation pathway signal 491 cho1967 COG2132 Q Putative multicopper oxidases 2269091 2270563 - 147 cho1968 2270604 2271044 - putative lactoylglutathione lyase 139 cho1969 2271256 2271672 + ornithine cyclodeaminase 350 cho1970 COG2423 E Predicted ornithine cyclodeaminase, mu-crystallin homolog 2271742 2272791 - arginase 309 cho1971 COG0010 E Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 2272791 2273717 - putative transcriptional regulator, asnC family 188 cho1972 2273698 2274261 + iron ABC transporter, ATP-binding protein, putative 279 cho1973 COG1120 PH ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 2274715 2275551 + hypothetical protein bll7295 638 cho1974 2275621 2277534 - chloramphenicol acetyltransferase 215 cho1975 COG0110 R Acetyltransferase (isoleucine patch superfamily) 2277958 2278602 - 291 cho1976 2278627 2279499 - iron(III) ABC transporter, ATP-binding protein 358 cho1977 2279879 2280952 - putative exonuclease 704 cho1978 2281030 2283141 - 149 cho1979 2283144 2283590 - nucleotidyltransferase, putative 608 cho1980 2283595 2285418 - acetate permease 578 cho1981 COG4147 R Predicted symporter 2285492 2287225 - hypothetical protein XAC4177 102 cho1982 2287225 2287530 - Acetyl-coenzyme A synthetase 672 cho1983 COG0365 I Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2287768 2289783 - hypothetical protein RSP_3710 116 cho1984 COG1320 P Multisubunit Na+/H+ antiporter, MnhG subunit 2290039 2290386 - 92 cho1985 COG2212 P Multisubunit Na+/H+ antiporter, MnhF subunit 2290386 2290661 - hypothetical protein NE1904 162 cho1986 COG1863 P Multisubunit Na+/H+ antiporter, MnhE subunit 2290661 2291146 - NADH dehydrogenase subunit N 540 cho1987 COG0651 CP Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 2291146 2292765 - hypothetical protein NE1902 114 cho1988 COG1006 P Multisubunit Na+/H+ antiporter, MnhC subunit 2292765 2293106 - pH adaption potassium efflux system, PhaB subunit 962 cho1989 COG1009 CP NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 2293109 2295994 - hypothetical exonuclease SbcD 405 cho1990 COG0420 L DNA repair exonuclease 2296291 2297505 + exonuclease SbcC 1238 cho1991 2297513 2301226 + FolD bifunctional protein 364 cho1992 COG0190 H 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 2301132 2302223 + 254 cho1993 2302578 2303339 + hypothetical protein RPD_2543 155 cho1994 2303356 2303820 - protein of unknown function DUF1212 264 cho1995 COG2966 S Uncharacterized conserved protein 2303826 2304617 - 935 cho1996 2304697 2307501 - Extracellular ligand-binding receptor 400 cho1997 2307524 2308723 - hypothetical protein RPA2196 195 cho1998 2308798 2309382 - transcriptional regulator, rrf2 family 145 cho1999 2309607 2310041 + 71 cho2000 2310229 2310441 + hypothetical protein SPO1867 127 cho2001 2310535 2310915 - 193 cho2002 2310911 2311489 - transketolase 672 cho2003 COG0021 G Transketolase 2311765 2313780 + 327 cho2005 2315639 2316619 - aconitate hydratase 902 cho2006 COG1048 C Aconitase A 2316884 2319589 + methyl-accepting chemotaxis sensory transducer 339 cho2007 2319761 2320777 + 119 cho2008 COG2314 S Predicted membrane protein 2320906 2321262 + 190 cho2009 COG2340 S Uncharacterized protein with SCP/PR1 domains 2321435 2322004 + 104 cho2010 COG2314 S Predicted membrane protein 2322071 2322382 + hypothetical protein Mbar_A2435 868 cho2011 2322389 2324992 - hypothetical protein RD1_2560 134 cho2012 2325221 2325622 - adenylosuccinate lyase 434 cho2013 COG0015 F Adenylosuccinate lyase 2325704 2327005 + flagellar motor switch protein FliG, putative 352 cho2014 COG1536 N Flagellar motor switch protein 2327166 2328221 + 47 cho2015 2328326 2328466 + glyceraldehyde-3-phosphate dehydrogenase, type I 333 cho2016 COG0057 G Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 2328608 2329606 + Penicillin-binding protein 1A (PBP-1a) 853 cho2017 COG5009 M Membrane carboxypeptidase/penicillin-binding protein 2330267 2332825 - putative cytochrome c-type biogenesis protein CcdA 252 cho2018 COG0785 O Cytochrome c biogenesis protein 2332940 2333695 - 116 cho2019 COG0425 O Predicted redox protein, regulator of disulfide bond formation 2333694 2334041 + ribonuclease E, putative 951 cho2020 COG1530 J Ribonucleases G and E 2334106 2336958 - phosphoribosylformylglycinamidine synthase I (FGAM) synthase 222 cho2023 COG0047 F Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 2340711 2341376 - Component of phosphoribosylformylglycinamidine (FGAM) synthetase 79 cho2024 COG1828 F Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 2341449 2341685 - phosphoribosylaminoimidazole-succinocarboxamide synthase 253 cho2025 COG0152 F Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 2341870 2342628 - 104 cho2026 2342858 2343169 + hypothetical protein TM1040_1467 672 cho2027 2343390 2345405 + methionine synthase I 338 cho2028 COG0646 E Methionine synthase I (cobalamin-dependent), methyltransferase domain 2345478 2346491 + radical SAM domain protein 368 cho2029 COG1533 L DNA repair photolyase 2346595 2347698 - Putative dimethylamine corrinoid protein 232 cho2030 2347865 2348560 + hypothetical protein RD1_2257 266 cho2031 2348670 2349467 + hypothetical protein y0925 230 cho2033 COG1296 E Predicted branched-chain amino acid permease (azaleucine resistance) 2350794 2351483 + transcriptional regulator, GntR family 220 cho2034 2351884 2352543 + aminotransferase class-III 463 cho2035 2352574 2353962 - ABC putrescine transporter, ATPase subunit 353 cho2036 2354289 2355347 + ABC putrescine transporter, inner membrane subunit 302 cho2037 2355352 2356257 + ABC putrescine transporter, inner membrane subunit 268 cho2038 2356253 2357056 + ABC putrescine transporter, periplasmic substrate-binding subunit 341 cho2039 2357091 2358113 + Putative metal-dependent hydrolase 562 cho2040 COG1574 R Predicted metal-dependent hydrolase with the TIM-barrel fold 2358174 2359859 + diguanylate cyclase/phosphodiesterase 831 cho2041 2359988 2362480 + 249 cho2042 2362493 2363239 - zinc-transporting ATPase 753 cho2043 COG2217 P Cation transport ATPase 2363327 2365585 - probable transcriptional regulator 148 cho2044 COG0789 K Predicted transcriptional regulators 2365676 2366119 + major facilitator superfamily MFS_1 405 cho2045 2366131 2367345 - phospholipase/carboxylesterase family protein 220 cho2046 COG0400 R Predicted esterase 2368056 2368715 + Restriction endonuclease 188 cho2047 COG1403 V Restriction endonuclease 2369121 2369684 + 640 cho2048 2369853 2371772 + hypothetical protein c4546 350 cho2049 2371829 2372878 - Histidine kinase 446 cho2050 2372890 2374227 - Glycyl-radical enzyme activating 393 cho2051 COG1180 O Pyruvate-formate lyase-activating enzyme 2374501 2375679 - Aldehyde dehydrogenase 533 cho2052 2375784 2377382 - 157 cho2053 COG3193 R Uncharacterized protein, possibly involved in utilization of glycolate and propanediol 2377382 2377852 - 93 cho2054 COG4576 QC Carbon dioxide concentrating mechanism/carboxysome shell protein 2377859 2378137 - 232 cho2055 2378149 2378844 - ethanolamine utilization protein EutJ 278 cho2056 2378847 2379680 - Propanediol utilization protein 215 cho2057 2379693 2380337 - 185 cho2058 COG4577 QC Carbon dioxide concentrating mechanism/carboxysome shell protein 2380359 2380913 - Putative pduB protein 269 cho2059 2380937 2381743 - putative propanediol utilization protein: polyhedral bodies 94 cho2060 COG4577 QC Carbon dioxide concentrating mechanism/carboxysome shell protein 2381769 2382050 - iron-containing alcohol dehydrogenase 379 cho2061 COG1454 C Alcohol dehydrogenase, class IV 2382143 2383279 - pyruvate formate-lyase 840 cho2062 COG1882 C Pyruvate-formate lyase 2383395 2385914 - hypothetical protein c4536 196 cho2063 COG0693 R Putative intracellular protease/amidase 2385976 2386563 - hypothetical protein RPC_1181 347 cho2064 2387073 2388113 + acetate kinase 414 cho2065 COG0282 C Acetate kinase 2388231 2389472 + hypothetical protein Syncc9902_0128 261 cho2067 2389744 2390526 + 163 cho2066 2390487 2390975 - hypothetical protein Patl_3222 305 cho2069 2391367 2392281 - Molybdate ABC transporter, permease protein 227 cho2070 COG4149 P ABC-type molybdate transport system, permease component 2392367 2393047 - molybdenum ABC transporter, periplasmic molybdate-binding protein 235 cho2071 COG0725 P ABC-type molybdate transport system, periplasmic component 2393054 2393758 - ABC transporter-related protein 235 cho2072 2393867 2394571 + Glutamine amidotransferase class-I 238 cho2073 COG0518 F GMP synthase - Glutamine amidotransferase domain 2394590 2395303 + probable monooxygenase protein 456 cho2074 2395610 2396977 + probable aliphatic sulphonate ABC transporter, permease protein 283 cho2075 2396981 2397829 + probable aliphatic sulphonate ABC transporter, substrate-binding protein 326 cho2076 2397876 2398853 + putative ABC transporter ATP-binding protein 270 cho2077 2398864 2399673 + 107 cho2078 2399728 2400048 - 62 cho2079 2400148 2400333 - 84 cho2080 2400333 2400584 - conserved hypothetical protein / putative esterase 182 cho2081 COG3545 R Predicted esterase of the alpha/beta hydrolase fold 2400961 2401506 + hypothetical protein RSP_3118 445 cho2082 2401740 2403074 + 183 cho2083 2403381 2403929 + oxidoreductase/nitrogenase, component 1 451 cho2085 2405544 2406896 - Nitrogenase 290 cho2086 COG1348 P Nitrogenase subunit NifH (ATPase) 2406901 2407770 - Radical SAM domain protein 408 cho2087 2407823 2409046 - hypothetical protein SAR11_0844 590 cho2088 COG0028 EH Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 2409292 2411061 - transcriptional regulator, gntR family, putative 484 cho2089 COG1167 KE Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 2411149 2412600 - probable adenosylmethionine-8-amino-7-oxononanoate aminotransferase 459 cho2090 2412655 2414031 - taurine ABC transporter, periplasmic taurine-binding protein 331 cho2091 2414357 2415349 + probable taurin uptake ABC transporter ATP-binding protein 271 cho2092 2415438 2416250 + taurine ABC transporter, permease protein 417 cho2093 2416250 2417500 + selenocysteine lyase 592 cho2094 COG0520 E Selenocysteine lyase 2417565 2419340 - major membrane protein I (MMP-I) (35 kDa antigen) 290 cho2095 2419318 2420187 - Serine O-acetyltransferase 319 cho2096 COG1045 E Serine acetyltransferase 2420328 2421284 - Rhodanese-like protein 155 cho2097 COG0607 P Rhodanese-related sulfurtransferase 2421369 2421833 - putative oxidoreductase 377 cho2098 2422144 2423274 - transcriptional regulator, AraC family 298 cho2099 2423346 2424239 + hypothetical protein RD1_4095 142 cho2100 COG1739 S Uncharacterized conserved protein 2424258 2424683 - 28 cho2101 2424863 2424946 + potassium-transporting ATPase subunit A 569 cho2102 COG2060 P K+-transporting ATPase, A chain 2424968 2426674 + potassium-transporting ATPase subunit B 682 cho2103 COG2216 P High-affinity K+ transport system, ATPase chain B 2426688 2428733 + potassium-transporting ATPase, C subunit 186 cho2104 COG2156 P K+-transporting ATPase, c chain 2428747 2429304 + probable sensor protein 897 cho2105 COG2205 T Osmosensitive K+ channel histidine kinase 2429320 2432010 + probable transcriptional regulator 228 cho2106 2432016 2432699 + 655 cho2107 COG0399 M Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 2432729 2434693 - 216 cho2108 2434568 2435215 + 305 cho2109 2435272 2436186 + 219 cho2110 2436186 2436842 + 345 cho2111 2436793 2437827 + 302 cho2112 2437827 2438732 + 319 cho2113 2438732 2439688 + Putative short-chain dehydrogenase/reductase 254 cho2114 2439716 2440477 - ABC permidine/putrescine transporter, inner membrane subunit 268 cho2115 2440491 2441294 - ABC permidine/putrescine transporter, inner membrane subunit 285 cho2116 2441305 2442159 - ABC permidine/putrescine transporter, periplasmic substrate-binding protein 384 cho2117 2442173 2443324 - ABC permidine/putrescine transporter, ATPase subunit 375 cho2118 2443352 2444476 - PUTATIVE TRANSCRIPTION REGULATOR PROTEIN 263 cho2119 2444599 2445387 + agmatinase 321 cho2120 COG0010 E Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 2445525 2446487 + 288 cho2121 2446551 2447414 - hypothetical protein syc0713_c 307 cho2122 2447513 2448433 + proline iminopeptidase 339 cho2123 2448433 2449449 + ABC transporter, peptide-binding protein 527 cho2124 COG4166 E ABC-type oligopeptide transport system, periplasmic component 2449449 2451029 + ABC transporter, permease protein 307 cho2125 2451090 2452010 + ABC transporter, permease protein 369 cho2126 2452006 2453112 + ABC transporter, ATP-binding protein 530 cho2127 COG4172 R ABC-type uncharacterized transport system, duplicated ATPase component 2453117 2454706 + anaerobic dimethyl sulfoxide reductase, C subunit, putative 296 cho2128 2454788 2455675 - 4Fe-4S binding domain protein 238 cho2129 2455678 2456391 - thiosulfate reductase, putative 920 cho2130 COG0243 C Anaerobic dehydrogenases, typically selenocysteine-containing 2456391 2459150 - hypothetical protein RD1_2476 348 cho2131 COG0628 R Predicted permease 2459318 2460361 - 303 cho2132 2460374 2461282 - 109 cho2133 2461366 2461692 - TrkA-C domain protein 593 cho2134 COG0471 P Di- and tricarboxylate transporters 2462071 2463849 + hypothetical protein DSY1214 186 cho2135 COG0431 R Predicted flavoprotein 2463970 2464527 + 183 cho2136 2464623 2465171 - two-component response regulator 269 cho2137 2465261 2466067 - periplasmic sensor signal transduction histidine kinase 587 cho2138 2466904 2468664 + 57 cho2139 2468759 2468929 + periplasmic sensor signal transduction histidine kinase 335 cho2140 2468990 2469994 - gamma-glutamyl kinase 388 cho2141 COG0263 E Glutamate 5-kinase 2470214 2471377 - GTP1/OBG family protein 341 cho2142 COG0536 R Predicted GTPase 2471320 2472342 - 170 cho2143 2472528 2473037 - Putative acetyltransferase 179 cho2144 2473037 2473573 - 50S ribosomal protein L27 89 cho2145 COG0211 J Ribosomal protein L27 2473789 2474055 - ribosomal protein L21 148 cho2146 COG0261 J Ribosomal protein L21 2474065 2474508 - GTP-binding protein EngA 499 cho2147 COG1160 R Predicted GTPases 2474893 2476389 - Pyrrolo-quinoline quinone 436 cho2148 COG1520 S FOG: WD40-like repeat 2476468 2477775 - hypothetical protein RD1_1780 214 cho2149 2477825 2478466 - ABC transporter, fused ATPase and inner membrane subunits 612 cho2150 COG5265 O ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components 2478726 2480561 - 423 cho2151 2480684 2481952 - RarD 294 cho2152 COG2962 R Predicted permeases 2482654 2483535 - beta-eliminating lyase family protein 454 cho2153 COG3033 E Tryptophanase 2483760 2485121 + Superoxide dismutase, Fe-Mn family 200 cho2154 COG0605 P Superoxide dismutase 2485412 2486011 - 58 cho2155 2486126 2486299 - Sarcosine oxidase, gamma subunit 184 cho2156 COG4583 E Sarcosine oxidase gamma subunit 2486496 2487047 - sarcosine oxidase alpha subunit 984 cho2157 2487043 2489994 - putative sarcosine oxidase delta subunit protein 107 cho2158 COG4311 E Sarcosine oxidase delta subunit 2489994 2490314 - sarcosine oxidase, beta subunit family 414 cho2159 2490409 2491650 - Putative cytochrome c-type biogenesis protein, cycH 424 cho2160 2491885 2493156 + conserved hypothetical protein TIGR00250 159 cho2161 COG0816 L Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 2493156 2493632 + hypothetical protein SPO2351 83 cho2162 COG3313 R Predicted Fe-S protein 2493628 2493876 + hypothetical protein SPO2693 345 cho2163 2494079 2495113 + Probable peptide chain release factor RF3 531 cho2164 COG4108 J Peptide chain release factor RF-3 2495534 2497126 + 54 cho2165 2497223 2497384 + Deoxyguanosinetriphosphate triphosphohydrolase 382 cho2166 COG0232 F dGTP triphosphohydrolase 2497510 2498655 - HesB/YadR/YfhF 109 cho2167 COG0316 S Uncharacterized conserved protein 2498729 2499055 + putative integrase/resolvase recombinase protein phage-related integrase 602 cho2168 2499199 2501004 + putative head portal protein, HK97 family 401 cho2169 COG4695 S Phage-related protein 2501085 2502287 + 106 cho2170 2502283 2502600 + possible phage phi-C31 gp36-like protein / Major capsid protein, HK97 family 503 cho2171 2502600 2504108 + 212 cho2172 2504115 2504750 + HNH nuclease / Probable phage PHI-105 holin-like protein 114 cho2173 2504756 2505097 + 88 cho2174 2505093 2505356 + 94 cho2175 2506527 2506808 + 159 cho2176 2506813 2507289 + hypothetical protein RSP_6047 140 cho2177 2507285 2507704 + 103 cho2178 2507710 2508018 + 213 cho2179 2508018 2508656 + 134 cho2180 2508668 2509069 - hypothetical protein RSP_2353 131 cho2181 2509132 2509524 + putative terminase large subunit / phage terminase 537 cho2182 COG4626 R Phage terminase-like protein, large subunit 2509531 2511141 + hypothetical protein RSP_2351 788 cho2183 2511158 2513521 + 148 cho2184 2514019 2514462 + 226 cho2185 2514532 2515209 + 170 cho2186 2515551 2516060 + 130 cho2187 2516173 2516562 + 182 cho2188 COG1430 S Uncharacterized conserved protein 2516873 2517418 - Cold-shock DNA-binding domain protein 177 cho2189 COG1278 K Cold shock proteins 2517340 2517870 - pyridoxamine 5,,-phosphate oxidase, putative 207 cho2190 COG0259 H Pyridoxamine-phosphate oxidase 2518058 2518678 - enoyl-(acyl carrier protein) reductase 273 cho2191 COG0623 I Enoyl-[acyl-carrier-protein] reductase (NADH) 2518804 2519622 + Putative threonine efflux protein, RhtB family 205 cho2192 2519627 2520241 + xanthine phosphoribosyltransferase 168 cho2193 COG0503 F Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 2520255 2520758 + aspartate aminotransferase, putative 392 cho2194 COG0436 E Aspartate/tyrosine/aromatic aminotransferase 2520910 2522085 + possible peptidyl-prolyl cis-trans isomerse 609 cho2195 COG0760 O Parvulin-like peptidyl-prolyl isomerase 2522162 2523988 + anthranilate synthase component I 502 cho2196 COG0147 EH Anthranilate/para-aminobenzoate synthases component I 2524003 2525508 + hypothetical protein SPO2148 497 cho2197 2525653 2527143 - Anthranilate synthase component II 195 cho2198 COG0512 EH Anthranilate/para-aminobenzoate synthases component II 2527289 2527873 + anthranilate phosphoribosyltransferase 336 cho2199 COG0547 E Anthranilate phosphoribosyltransferase 2527873 2528880 + Indole-3-glycerol-phosphate synthase 264 cho2200 COG0134 E Indole-3-glycerol phosphate synthase 2528880 2529671 + LexA repressor 238 cho2202 COG1974 KT SOS-response transcriptional repressors (RecA-mediated autopeptidases) 2530264 2530977 + glutamyl-tRNA synthetase 466 cho2203 COG0008 J Glutamyl- and glutaminyl-tRNA synthetases 2533246 2534643 + Citrate synthase 431 cho2204 COG0372 C Citrate synthase 2534748 2536040 + putative transmembrane protein 528 cho2205 COG3131 P Periplasmic glucans biosynthesis protein 2536109 2537692 - NnrS, putative 394 cho2206 COG3213 P Uncharacterized protein involved in response to NO 2537753 2538934 - 183 cho2207 2539052 2539600 - 208 cho2208 2539680 2540303 - L-ribulokinase protein 542 cho2209 COG1069 C Ribulose kinase 2540306 2541931 - ribitol 2-dehydrogenase 242 cho2210 2541965 2542690 - ABC sugar transporter, inner membrane subunit 416 cho2211 COG4214 G ABC-type xylose transport system, permease component 2542709 2543956 - ABC sugar transporter, ATPase subunit 267 cho2212 2543956 2544756 - ABC sugar transporter, periplasmic binding protein 397 cho2213 COG4213 G ABC-type xylose transport system, periplasmic component 2544855 2546045 - transcriptional regulator, LacI family 342 cho2214 2546136 2547161 + biopolymer transport protein 261 cho2215 COG0811 U Biopolymer transport proteins 2547714 2548496 + solvent/drug/ferric siderophore transport system, inner membrane protein ExbD 139 cho2216 COG0848 U Biopolymer transport protein 2548499 2548915 + 272 cho2218 2548915 2549730 + 83 cho2217 2549720 2549968 - cobalamin synthesis protein, putative 401 cho2219 COG0523 R Putative GTPases (G3E family) 2549990 2551192 - Peptidoglycan glycosyltransferase 599 cho2220 COG0768 M Cell division protein FtsI/penicillin-binding protein 2 2551364 2553160 - 132 cho2221 2553160 2553555 - Mrp/NBP35 family protein, putative 354 cho2225 COG0489 D ATPases involved in chromosome partitioning 2555813 2556874 - 67 cho2226 2557178 2557378 + hypothetical protein RD1_1904 265 cho2227 COG2961 R Protein involved in catabolism of external DNA 2557864 2558658 + 82 cho2228 2558671 2558916 - Intracellular septation protein A 204 cho2229 COG2917 D Intracellular septation protein A 2559040 2559651 - signal recognition particle-docking protein FtsY 479 cho2230 COG0552 U Signal recognition particle GTPase 2559924 2561360 - fatty acid desaturase 445 cho2231 2561714 2563048 + 136 cho2232 2563119 2563526 + Phosphoribosylamine--glycine ligase 451 cho2233 COG0151 F Phosphoribosylamine-glycine ligase 2565100 2566452 + L-serine dehydratase 1 466 cho2234 COG1760 E L-serine deaminase 2566652 2568049 - 322 cho2235 2568241 2569206 + ribose 5-phosphate isomerase 261 cho2236 COG0120 G Ribose 5-phosphate isomerase 2569310 2570092 + 172 cho2237 2570043 2570558 + probable glutathione reductase 450 cho2238 COG1249 C Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 2570608 2571957 + Probable HflK protein 391 cho2239 COG0330 O Membrane protease subunits, stomatin/prohibitin homologs 2572026 2573198 + Probable HflC protein 299 cho2240 COG0330 O Membrane protease subunits, stomatin/prohibitin homologs 2573201 2574097 + 63 cho2241 2574100 2574288 + 196 cho2244 2575963 2576550 - ferredoxin 107 cho2245 COG0633 C Ferredoxin 2576682 2577002 + formyltetrahydrofolate deformylase 294 cho2246 COG0788 F Formyltetrahydrofolate hydrolase 2577434 2578315 + 6-phosphogluconolactonase 223 cho2248 COG0363 G 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 2580101 2580769 - glucose-6-phosphate 1-dehydrogenase 491 cho2249 COG0364 G Glucose-6-phosphate 1-dehydrogenase 2580769 2582241 - hypothetical protein RSP_2648 186 cho2250 2582409 2582966 - Predicted SAM-dependent methyltransferase 402 cho2251 COG1092 R Predicted SAM-dependent methyltransferases 2582969 2584174 - 6-phosphogluconate dehydratase 606 cho2252 COG0129 EG Dihydroxyacid dehydratase/phosphogluconate dehydratase 2584405 2586222 + 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 217 cho2253 COG0800 G 2-keto-3-deoxy-6-phosphogluconate aldolase 2586320 2586970 + 89 cho2254 2586977 2587243 - Glutamate-ammonia-ligase adenylyltransferase 923 cho2255 COG1391 OT Glutamine synthetase adenylyltransferase 2587260 2590028 - hypothetical protein TM1040_0884 152 cho2256 2590284 2590739 + periplasmic mannitol-binding protein; SmoM 365 cho2258 COG4663 Q TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 2591928 2593022 + short-chain dehydrogenase/reductase SDR 256 cho2259 2593122 2593889 + 111 cho2260 COG1539 H Dihydroneopterin aldolase 2593885 2594217 + 104 cho2261 2594286 2594597 + Glycoside hydrolase, family 3-like 781 cho2262 COG1472 G Beta-glucosidase-related glycosidases 2594666 2597008 + hypothetical protein BF4368 404 cho2264 2597008 2598219 + transporter, putative 578 cho2263 COG4178 R ABC-type uncharacterized transport system, permease and ATPase components 2598222 2599955 - short-chain dehydrogenase/reductase SDR 218 cho2265 2600209 2600862 + Survival protein SurE 262 cho2266 COG0496 R Predicted acid phosphatase 2601006 2601791 + Protein-L-isoaspartate O-methyltransferase 215 cho2267 COG2518 O Protein-L-isoaspartate carboxylmethyltransferase 2601791 2602435 + LysM domain/M23/M37 peptidase 416 cho2268 COG0739 M Membrane proteins related to metalloendopeptidases 2602499 2603746 + hypothetical protein c4604 559 cho2269 COG2985 R Predicted permease 2603885 2605561 + Exodeoxyribonuclease III 259 cho2270 COG0708 L Exonuclease III 2605587 2606363 + putative salicylate hydroxylase (Salicylate 1-monooxygenase) 420 cho2271 COG0654 HC 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 2606403 2607662 - ATPase, AAA family protein, putative 280 cho2273 COG0714 R MoxR-like ATPases 2608365 2609204 + 368 cho2274 2609220 2610323 - 488 cho2275 2610323 2611786 - 591 cho2276 2611811 2613583 - 82 cho2277 2613583 2613828 - cytochrome P450 402 cho2278 2613870 2615075 - AMP-binding enzyme family protein 577 cho2279 2615071 2616801 - 251 cho2280 2616801 2617553 - transcription regulator, AsnC family 157 cho2281 COG1522 K Transcriptional regulators 2618167 2618637 + transcriptional regulator, GntR family, putative 252 cho2282 2618650 2619405 - branched-chain amino acid ABC transporter, periplasmic substrate-binding protein 395 cho2283 2619568 2620752 + branched-chain amino acid ABC transporter, permease protein 289 cho2284 COG0559 E Branched-chain amino acid ABC-type transport system, permease components 2620824 2621690 + branched-chain amino acid ABC transporter, permease protein 323 cho2285 2621697 2622665 + branched-chain amino acid ABC transporter, ATP-binding protein 260 cho2286 COG0411 E ABC-type branched-chain amino acid transport systems, ATPase component 2622665 2623444 + branched-chain amino acid ABC transporter, ATP-binding protein 238 cho2287 COG0410 E ABC-type branched-chain amino acid transport systems, ATPase component 2623451 2624164 + hydantoin Racemase 243 cho2288 2624167 2624895 + Betaine-aldehyde dehydrogenase 499 cho2289 2624926 2626422 - binding-protein-dependent transport systems inner membrane component 260 cho2290 2626442 2627221 - binding-protein-dependent transport systems inner membrane component 289 cho2291 2627234 2628100 - spermidine/putrescine ABC transporter ATP-binding component 366 cho2292 2628100 2629197 - extracellular solute-binding protein, family 1 350 cho2293 2629282 2630331 - 446 cho2294 2630331 2631668 - 378 cho2295 2631668 2632801 - hypothetical protein mll2947 462 cho2296 2633098 2634483 - ABC lipoprotein efflux transporter, inner membrane subunit, LolE 430 cho2297 COG4591 M ABC-type transport system, involved in lipoprotein release, permease component 2634661 2635950 + ABC transporter related 227 cho2298 COG1136 V ABC-type antimicrobial peptide transport system, ATPase component 2635946 2636626 + 106 cho2299 COG1393 P Arsenate reductase and related proteins, glutaredoxin family 2636626 2636943 + 93 cho2300 2637075 2637353 + Cold-shock DNA-binding domain protein 68 cho2301 2637425 2637628 - threonyl-tRNA synthetase 648 cho2302 COG0441 J Threonyl-tRNA synthetase 2638008 2639951 - 209 cho2303 2640230 2640856 - Hemolysin-type calcium-binding region:Haemolysin-type calcium binding related 1073 cho2304 2641138 2644356 - prolyl-tRNA synthetase 446 cho2305 COG0442 J Prolyl-tRNA synthetase 2644629 2645966 + 109 cho2306 2647008 2647334 - zinc metallopeptidase-like protein 232 cho2307 COG1451 R Predicted metal-dependent hydrolase 2647451 2648146 + transcriptional regulator, GntR family 215 cho2308 2648180 2648824 + putative acyl-CoA thioester hydrolase protein 167 cho2309 COG1607 I Acyl-CoA hydrolase 2648991 2649491 + ErfK/YbiS/YcfS/YnhG 207 cho2310 2649580 2650200 + Rhodanese-like protein 348 cho2311 2650203 2651246 + 182 cho2312 COG0386 O Glutathione peroxidase 2651973 2652518 - tonB dependent receptor domain protein 853 cho2313 2652576 2655134 - 411 cho2314 2655136 2656368 + 585 cho2315 2656771 2658525 - putative manganese-dependent inorganic pyrophosphatase 306 cho2316 COG1227 C Inorganic pyrophosphatase/exopolyphosphatase 2658700 2659617 - Chaperonin Cpn10 (GroES) 95 cho2317 COG0234 O Co-chaperonin GroES (HSP10) 2659860 2660144 + chaperonin GroEL 545 cho2318 COG0459 O Chaperonin GroEL (HSP60 family) 2660196 2661830 + DNA polymerase I 950 cho2320 COG0749 L DNA polymerase I - 3'-5' exonuclease and polymerase domains 2662390 2665239 - 60 cho2321 2665335 2665514 - epsK domain protein 524 cho2322 2666146 2667717 - hypothetical protein TM1040_2487 272 cho2323 2667864 2668679 + 220 cho2324 2668915 2669574 - PfkB family kinase, putative 328 cho2325 2669581 2670564 - endonuclease III 214 cho2326 COG0177 L Predicted EndoIII-related endonuclease 2670564 2671205 - 315 cho2327 2671360 2672304 + transcriptional regulator, AraC family 299 cho2328 COG0350 L Methylated DNA-protein cysteine methyltransferase 2672383 2673279 + OmpA family protein 224 cho2329 COG2885 M Outer membrane protein and related peptidoglycan-associated (lipo)proteins 2673406 2674077 + GntR-like 257 cho2330 2674180 2674950 + 131 cho2331 2674968 2675360 - oxygen-independent coproporphyrinogen III oxidase 451 cho2332 COG0635 H Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 2676157 2677509 + ribosome-associated GTPase 344 cho2333 COG1162 R Predicted GTPases 2677764 2678795 + probable glycosyltransferase 408 cho2334 2678888 2680111 - peptide ABC transporter, ATP-binding protein, putative 530 cho2335 COG4172 R ABC-type uncharacterized transport system, duplicated ATPase component 2680111 2681700 - ABC peptide transporter, inner membrane subunit 368 cho2336 COG4239 R ABC-type uncharacterized transport system, permease component 2681700 2682803 - binding-protein-dependent transport systems inner membrane component 383 cho2337 COG4174 R ABC-type uncharacterized transport system, permease component 2682806 2683954 - ABC peptide transporter, substrate binding protein 630 cho2338 COG4166 E ABC-type oligopeptide transport system, periplasmic component 2684005 2685894 - 199 cho2339 COG3474 C Cytochrome c2 2686020 2686616 - prephenate dehydratase, putative 279 cho2340 COG0077 E Prephenate dehydratase 2686817 2687653 + 152 cho2341 2687809 2688264 - NUDIX hydrolase 310 cho2342 COG2816 L NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 2688332 2689261 - cytidine and deoxycytidylate deaminase family protein 149 cho2343 COG0590 FJ Cytosine/adenosine deaminases 2689711 2690157 - hypothetical protein AGR_C_1238 594 cho2344 COG1187 J 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 2690277 2692058 + hypothetical protein RSP_2265 303 cho2345 2692222 2693130 + 180 cho2346 2693264 2693803 + tellurite resistance protein TelA 388 cho2347 2693827 2694990 + hypothetical protein RSP_2263 315 cho2348 2694990 2695934 + hypothetical protein RD1_1986 370 cho2349 2695946 2697055 + hypothetical protein RSP_2260 375 cho2350 2697062 2698186 + putative Fructokinase 307 cho2351 2698244 2699164 + D-tyrosyl-tRNA deacylase 149 cho2352 COG1490 J D-Tyr-tRNAtyr deacylase 2699164 2699610 + putative ATP-dependent RNA helicase, putative 448 cho2353 COG0513 LKJ Superfamily II DNA and RNA helicases 2699861 2701204 + Thymidine kinase 196 cho2354 COG1435 F Thymidine kinase 2701279 2701866 + thioredoxin 152 cho2355 2701924 2702379 + hypothetical protein Jann_3339 351 cho2357 2702697 2703749 + 754 cho2356 2703752 2706013 - putative hemolysin-adenlyate cyclase protein 1071 cho2358 2706263 2709475 + hypothetical protein SMc01827 327 cho2359 COG0715 P ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 2709522 2710502 - binding-protein-dependent transport systems inner membrane component 282 cho2360 2710550 2711395 - ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit 287 cho2361 2711395 2712255 - ABC transporter, ATP-binding protein 263 cho2362 2712352 2713140 - dihydropyrimidinase 483 cho2363 COG0044 F Dihydroorotase and related cyclic amidohydrolases 2713150 2714598 - N-carbamoyl-L-amino acid amidohydrolase 416 cho2364 2714680 2715927 - 129 cho2365 2716125 2716511 + dihydropyrimidine dehydrogenase 433 cho2366 2716791 2718089 - NADPH-dependent glutamate synthase beta chain and related oxidoreductase 475 cho2367 COG0493 ER NADPH-dependent glutamate synthase beta chain and related oxidoreductases 2718094 2719518 - 60 cho2368 2720427 2720606 + PucC protein 462 cho2369 2720706 2722091 + 232 cho2370 2722157 2722852 + ABC sulfate/thiosulfate transporter, ATPase subunit CysA 239 cho2371 COG1118 P ABC-type sulfate/molybdate transport systems, ATPase component 2723238 2723954 - sulphate permease inner membrane protein 287 cho2372 COG4208 P ABC-type sulfate transport system, permease component 2723966 2724826 - Sulfate transport system permease protein cysT 278 cho2373 COG0555 O ABC-type sulfate transport system, permease component 2724822 2725655 - cysteine synthase A 324 cho2374 COG0031 E Cysteine synthase 2725855 2726826 - tryptophan synthase subunit beta 402 cho2375 COG0133 E Tryptophan synthase beta chain 2727118 2728323 - 641 cho2376 2728431 2730353 - PAS:GGDEF 918 cho2377 2730500 2733253 - PTS system, fructose-specific IIBC component 578 cho2378 COG1299 G Phosphotransferase system, fructose-specific IIC component 2733501 2735234 - 1-phosphofructokinase 316 cho2379 COG1105 G Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 2735256 2736203 - multiphosphoryl transfer protein 827 cho2380 COG1080 G Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 2736203 2738683 - putative ABC transporter solute-binding protein 468 cho2381 2738761 2740164 + putative hybrid two-component system regulatory protein 877 cho2382 2740164 2742794 + DNA-binding response regulator 292 cho2383 2742811 2743686 - hypothetical protein RSP_0624 346 cho2384 COG1530 J Ribonucleases G and E 2743789 2744826 - Putative Maf-like protein 191 cho2385 COG0424 D Nucleotide-binding protein implicated in inhibition of septum formation 2744826 2745398 - translation initiation factor IF-1 72 cho2386 COG0361 J Translation initiation factor 1 (IF-1) 2745398 2745613 - Putative amidohydrolase 300 cho2387 COG0388 R Predicted amidohydrolase 2745699 2746598 - hypothetical protein RSP_0628 193 cho2388 2746598 2747176 - hypothetical protein Jann_2875 139 cho2389 2747179 2747595 - hypothetical protein MS0142 277 cho2390 COG0702 MG Predicted nucleoside-diphosphate-sugar epimerases 2747891 2748721 - hypothetical protein SDY_4381 130 cho2392 COG1733 K Predicted transcriptional regulators 2748808 2749197 + hypothetical protein RSP_0630 150 cho2391 COG0394 T Protein-tyrosine-phosphatase 2749188 2749637 - hypothetical protein RD1_1069 159 cho2393 2749640 2750116 - histidinol dehydrogenase 438 cho2394 COG0141 E Histidinol dehydrogenase 2750116 2751429 - 158 cho2395 2751607 2752080 - hypothetical protein RSP_6122 159 cho2396 2752096 2752572 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 422 cho2397 COG0766 M UDP-N-acetylglucosamine enolpyruvyl transferase 2752572 2753837 - 53 cho2398 2753845 2754003 - hypothetical protein Patl_1736 499 cho2399 2755551 2757047 + Resolvase-like 221 cho2400 COG1961 L Site-specific recombinases, DNA invertase Pin homologs 2757619 2758281 + 307 cho2401 2760084 2761004 + 151 cho2402 2761305 2761757 + BRO family, N-terminal domain protein 249 cho2403 COG3617 K Prophage antirepressor 2762380 2763126 + site-specific recombinase, phage integrase family 474 cho2404 2763324 2764745 - iron compound ABC transporter, periplasmic iron compound-binding protein, putative 337 cho2405 2765388 2766398 + Binding-protein-dependent transport systems inner membrane component 562 cho2406 COG1178 P ABC-type Fe3+ transport system, permease component 2766410 2768095 + sensor histidine kinase, putative 606 cho2407 2768530 2770347 + ATP-dependent protease La, putative 803 cho2408 COG0466 O ATP-dependent Lon protease, bacterial type 2770923 2773331 + 148 cho2409 2773470 2773913 + hypothetical protein RSP_3707 549 cho2410 COG1252 C NADH dehydrogenase, FAD-containing subunit 2774134 2775780 - hypothetical protein SPO1034 295 cho2411 2776087 2776971 + hypothetical protein RSP_0164 82 cho2412 2776993 2777238 - 71 cho2414 2777379 2777591 + 645 cho2413 2777590 2779524 - 107 cho2415 COG1734 T DnaK suppressor protein 2779654 2779974 - possible flagellar switch protein FliM 418 cho2416 2780063 2781316 - Na+/solute symporter 910 cho2417 2781403 2784132 - 96 cho2418 2784139 2784426 - 142 cho2419 2784429 2784854 - transcriptional regulator, putative 451 cho2420 COG3800 R Predicted transcriptional regulator 2784918 2786270 - 151 cho2421 2786768 2787220 - probable adenosylmethionine--8-amino-7-oxononanoate aminotransferaseprotein 441 cho2422 COG0161 H Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2787315 2788637 - transcriptional regulator, TetR family 216 cho2423 2788781 2789428 + 184 cho2424 2789543 2790094 + acetyl-CoA carboxylase, biotin carboxyl carrier protein 165 cho2425 COG0511 I Biotin carboxyl carrier protein 2790394 2790888 + acetyl-CoA carboxylase, biotin carboxylase 448 cho2426 COG0439 I Biotin carboxylase 2790899 2792242 + 235 cho2427 2792276 2792980 - Leucyltransferase 212 cho2429 COG2360 O Leu/Phe-tRNA-protein transferase 2793045 2793680 + 122 cho2428 2793650 2794015 - 261 cho2430 COG1463 Q ABC-type transport system involved in resistance to organic solvents, periplasmic component 2794015 2794797 - ATP-dependent protease ATP-binding subunit 424 cho2431 COG1219 O ATP-dependent protease Clp, ATPase subunit 2795030 2796301 - Protease subunit of ATP-dependent Clp protease 209 cho2432 COG0740 OU Protease subunit of ATP-dependent Clp proteases 2796426 2797052 - hypothetical protein VCA0032 189 cho2433 2797260 2797826 + methyl-accepting chemotaxis protein McpA 880 cho2434 2797843 2800482 + Transthyretin 118 cho2435 COG2351 R Transthyretin-like protein 2800495 2800848 - Possible polysaccharide deacetylase 471 cho2436 2800982 2802394 + Probable glyoxylate induced protein 276 cho2438 COG3257 R Uncharacterized protein, possibly involved in glyoxylate utilization 2802394 2803221 + putative hydroxypyruvate reductase 420 cho2437 COG2379 G Putative glycerate kinase 2803224 2804483 - hypothetical protein BR1460 228 cho2439 2804474 2805157 - 5,-Nucleotidase-like 521 cho2440 COG0737 F 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 2805257 2806819 - hypothetical protein RSP_0956 112 cho2441 2806979 2807314 + dihydroorotate dehydrogenase 352 cho2442 COG0167 F Dihydroorotate dehydrogenase 2807314 2808369 + acetyl-CoA synthetase 656 cho2443 COG0365 I Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 2808529 2810496 - Putative sulfate transporter, SulP family 549 cho2444 COG0659 P Sulfate permease and related transporters (MFS superfamily) 2810805 2812451 - hypothetical protein RD1_1252 159 cho2445 2812539 2813015 + hypothetical protein TM1040_2263 763 cho2446 2813031 2815319 - lysyl-tRNA synthetase 534 cho2447 COG1384 J Lysyl-tRNA synthetase (class I) 2815562 2817163 - hypothetical protein RSP_0583 140 cho2448 2817268 2817687 + hypothetical protein Rru_A3547 114 cho2450 2818029 2818370 + 743 cho2449 2818367 2820595 - diguanylate cyclase, putative 353 cho2451 2820513 2821571 - hypothetical protein SPO2748 196 cho2452 2821571 2822158 - hypothetical protein SPO2749 576 cho2453 2822223 2823950 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein 231 cho2454 COG0546 R Predicted phosphatases 2824010 2824702 - 92 cho2455 2824715 2824990 - two component diguanylate cyclase 466 cho2456 2825083 2826480 + 190 cho2457 2826581 2827150 - 127 cho2458 2827173 2827553 - RNA polymerase sigma-70 factor 192 cho2459 2827549 2828124 - 199 cho2460 2828208 2828804 - hydrolase, NUDIX family 247 cho2462 2828975 2829715 + 167 cho2461 2829694 2830194 - 114 cho2463 2830185 2830526 - aldo/keto reductase 348 cho2464 2830507 2831550 - hypothetical protein SPO0925 216 cho2465 COG0115 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 2831623 2832270 - para-aminobenzoate synthase, component I, putative 385 cho2466 COG0147 EH Anthranilate/para-aminobenzoate synthases component I 2832213 2833367 - CAIB/BAIF family protein 382 cho2467 COG1804 C Predicted acyl-CoA transferases/carnitine dehydratase 2833401 2834546 - 162 cho2468 COG2847 S Uncharacterized protein conserved in bacteria 2834642 2835127 - delta-1-pyrroline-5-carboxylate dehydrogenase 1127 cho2469 2835198 2838578 - transcriptional regulator, AsnC family 154 cho2470 2838689 2839150 + selenide, water dikinase 375 cho2471 COG0709 E Selenophosphate synthase 2839159 2840283 - UspA domain protein 284 cho2472 2840402 2841253 + 162 cho2473 2841267 2841752 - RbsD or FucU transport 145 cho2474 COG4154 G Fucose dissimilation pathway protein FucU 2842185 2842619 + glycerol kinase 533 cho2475 COG0554 C Glycerol kinase 2842710 2844308 - transketolase 320 cho2476 2844170 2845129 - transketolase, N-terminal subunit 274 cho2477 2845132 2845953 - hypothetical protein YPTB0819 557 cho2478 2845968 2847638 - probable ribose ABC transporter, substrate-binding protein 313 cho2479 2847784 2848722 + 215 cho2480 2848789 2849433 + ribose ABC transporter, ATP-binding protein 512 cho2481 2849433 2850968 + ribose ABC transporter, permease protein 352 cho2482 2850968 2852023 + transcriptional regulator, DeoR family 269 cho2483 2852120 2852926 + Hypothetical oxidoreductase yuxG 677 cho2484 2853160 2855190 - transcriptional regulator, putative 323 cho2485 COG2390 K Transcriptional regulator, contains sigma factor-related N-terminal domain 2855274 2856242 + translation initiation factor IF-2B subunit alpha 397 cho2486 COG0182 J Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family 2856475 2857665 - 622 cho2487 2857755 2859620 - predicted hydrolase or acyltransferase 274 cho2488 2859744 2860565 - enoyl-(acyl-carrier-protein) reductase 262 cho2489 COG0623 I Enoyl-[acyl-carrier-protein] reductase (NADH) 2860623 2861408 - 3-oxoacyl-(Acyl-carrier-protein) synthase 409 cho2490 COG0304 IQ 3-oxoacyl-(acyl-carrier-protein) synthase 2861417 2862643 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 169 cho2491 COG0764 I 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 2862670 2863176 - probable Ferric-uptake regulator 138 cho2492 COG0735 P Fe2+/Zn2+ uptake regulation proteins 2863331 2863744 + elongation factor P 189 cho2493 COG0231 J Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 2864069 2864635 - PUTATIVE LYSYL-TRNA SYNTHETASE PROTEIN 349 cho2495 2864733 2865779 + hypothetical protein SPO0809 122 cho2494 2865773 2866138 - 6-aminohexanoate-dimer hydrolase, putative 387 cho2496 COG1680 V Beta-lactamase class C and other penicillin binding proteins 2866154 2867314 - transcriptional regulator, MarR family, putative 170 cho2497 2867426 2867935 - 90 cho2498 COG2938 S Uncharacterized conserved protein 2868052 2868321 - aspartate aminotransferase 400 cho2499 2868447 2869646 + hypothetical protein SPO1263 141 cho2500 2869676 2870098 + FAD-dependent pyridine nucleotide-disulphide oxidoreductase 376 cho2502 2870176 2871303 + MATE efflux family protein 468 cho2501 COG0534 V Na+-driven multidrug efflux pump 2871266 2872669 - cytochrome b 195 cho2503 2872714 2873298 - 150 cho2504 2873360 2873809 - SAM-dependent methyltransferase 199 cho2505 2873928 2874524 - polyphosphate kinase 2 340 cho2506 COG2326 S Uncharacterized conserved protein 2874588 2875607 - Glutathione-S-transferase 223 cho2507 2875757 2876425 + peptide chain release factor 1 351 cho2508 COG0216 J Protein chain release factor A 2876621 2877673 + Putative methylase 252 cho2509 COG2890 J Methylase of polypeptide chain release factors 2877746 2878501 + 367 cho2510 2878443 2879543 + dimethyladenosine transferase 280 cho2511 COG0030 J Dimethyladenosine transferase (rRNA methylation) 2879601 2880440 - 4-hydroxythreonine-4-phosphate dehydrogenase 350 cho2512 COG1995 H Pyridoxal phosphate biosynthesis protein 2880462 2881511 - peptidyl-prolyl cis-trans isomerase SurA, putative 422 cho2513 COG0760 O Parvulin-like peptidyl-prolyl isomerase 2881511 2882776 - Putative organic solvent tolerance protein 736 cho2514 COG1452 M Organic solvent tolerance protein OstA 2882836 2885043 - putative permease 366 cho2515 COG0795 R Predicted permeases 2885043 2886140 - Predicted permease 376 cho2516 COG0795 R Predicted permeases 2886140 2887267 - leucyl aminopeptidase 488 cho2517 COG0260 E Leucyl aminopeptidase 2887433 2888896 + DNA polymerase III subunit chi 150 cho2518 COG2927 L DNA polymerase III, chi subunit 2888903 2889352 + thiamin ABC transporter, periplasmic thiamin-binding protein 329 cho2519 COG4143 H ABC-type thiamine transport system, periplasmic component 2889566 2890552 + thiamin ABC transporter membrane component 514 cho2520 COG1178 P ABC-type Fe3+ transport system, permease component 2890531 2892072 + ABC thiamine transporter, ATPase subunit 231 cho2521 COG3840 H ABC-type thiamine transport system, ATPase component 2892059 2892751 + 113 cho2522 2892860 2893198 + 106 cho2523 2893206 2893523 + 152 cho2524 2893574 2894029 - 213 cho2525 2894076 2894714 + hypothetical protein RSP_1380 275 cho2526 COG0791 M Cell wall-associated hydrolases (invasion-associated proteins) 2894742 2895566 - leucine aminopeptidase, putative 467 cho2527 COG0260 E Leucyl aminopeptidase 2895566 2896966 - 144 cho2528 2897059 2897490 - Carbonic anhydrase 216 cho2529 COG0288 P Carbonic anhydrase 2897591 2898238 + 154 cho2530 2898278 2898739 + 67 cho2531 2898835 2899035 - hypothetical protein SPO3713 534 cho2532 2899050 2900651 - 1248 cho2533 COG0136 E Aspartate-semialdehyde dehydrogenase 2900760 2904503 - putative bacteriophage-related protein 127 cho2534 2911158 2911538 - resolvase 441 cho2535 COG1961 L Site-specific recombinases, DNA invertase Pin homologs 2911538 2912860 - hypothetical protein amb0345 151 cho2536 2912860 2913312 - 412 cho2537 2913685 2914920 + 309 cho2538 2914892 2915818 + 197 cho2539 2915930 2916520 + 118 cho2540 2916537 2916890 + 130 cho2541 2916893 2917282 + hypothetical protein Nwi_1961 172 cho2542 2917285 2917800 + hypothetical protein amb1148 285 cho2543 2917904 2918758 + hypothetical protein amb1149 261 cho2544 2918783 2919565 + 179 cho2545 2919710 2920246 + hypothetical protein BH10910 499 cho2546 COG0507 L ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 2921079 2922575 + Predicted P-loop ATPase and inactivated derivative 851 cho2547 2922588 2925140 + hypothetical protein amb0359 173 cho2548 2925578 2926096 + 396 cho2549 2926729 2927916 + 233 cho2550 2928356 2929054 + 186 cho2551 COG0863 L DNA modification methylase 2929172 2929729 + 232 cho2552 2929752 2930447 - sulfate ABC transporter, sulfate-binding protein 371 cho2553 COG1613 P ABC-type sulfate transport system, periplasmic component 2931910 2933022 + hypothetical protein AGR_L_2071 359 cho2554 2933221 2934297 + Secretion protein HlyD 348 cho2555 2934297 2935340 + ACRIFLAVIN RESISTANCE PROTEIN D 1027 cho2556 2935340 2938420 + 237 cho2557 2938479 2939189 + 50S ribosomal protein L33 55 cho2558 COG0267 J Ribosomal protein L33 2939259 2939423 - 236 cho2559 COG2979 S Uncharacterized protein conserved in bacteria 2939557 2940264 - negative regulator of AmpC, AmpD 229 cho2560 COG3023 V Negative regulator of beta-lactamase expression 2941010 2941696 - 225 cho2561 2941696 2942370 - glutamyl-tRNA(Gln) amidotransferase, A subunit 492 cho2562 COG0154 J Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases 2942384 2943859 - Glu-tRNA (Gln) amidotransferase, subunit C 95 cho2563 COG0721 J Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 2943859 2944143 - metallo Beta lactamase superfamily 230 cho2564 COG2220 R Predicted Zn-dependent hydrolases of the beta-lactamase fold 2944258 2944947 + 368 cho2565 2945397 2946500 - DNA polymerase III, tau subunit 589 cho2566 COG2812 L DNA polymerase III, gamma/tau subunits 2946691 2948457 + hypothetical protein RSP_0711 114 cho2567 COG0718 S Uncharacterized protein conserved in bacteria 2948539 2948880 + recombination protein RecR 199 cho2568 COG0353 L Recombinational DNA repair protein (RecF pathway) 2948898 2949494 + 115 cho2569 2949497 2949841 + Glutathione S-transferase 221 cho2570 2949919 2950581 + Domain of unknown function DUF1730 338 cho2571 COG1600 C Uncharacterized Fe-S protein 2950744 2951757 + Putative transporter, RarD family, DMT superfamily 316 cho2572 2951798 2952745 + branched-chain amino acid aminotransferase 289 cho2573 COG0115 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 2953419 2954285 - transcriptional regulator, MarR family 166 cho2574 2954434 2954931 + DNA-binding response regulator PetR, putative 237 cho2575 2954931 2955641 + Ubiquinol-cytochrome C reductase, iron-sulfur protein 191 cho2576 COG0723 C Rieske Fe-S protein 2955839 2956411 + Cytochrome b 437 cho2577 COG1290 C Cytochrome b subunit of the bc complex 2956427 2957737 + Cytochrome c1 precursor 279 cho2578 COG2857 C Cytochrome c1 2957758 2958594 + transcriptional regulator, TetR family 208 cho2579 2958720 2959343 - hypothetical protein SPO1309 147 cho2580 2959480 2959920 + ABC basic amino acid transporter, ATPase subunit 312 cho2581 COG4598 E ABC-type histidine transport system, ATPase component 2959917 2960852 + ABC basic amino acid transporter, solute-binding protein 239 cho2582 2960890 2961606 + binding-protein-dependent transport systems inner membrane component 293 cho2583 COG4215 E ABC-type arginine transport system, permease component 2961700 2962578 + ABC basic amino acid transporter, inner membrane subunit 277 cho2584 COG4160 E ABC-type arginine/histidine transport system, permease component 2962578 2963408 + glutamine synthetase, putative 443 cho2585 2963416 2964744 + Glutamine amidotransferase class-I 228 cho2586 COG0518 F GMP synthase - Glutamine amidotransferase domain 2964922 2965605 + 56 cho2587 2965611 2965778 + probable glutamine synthetase 455 cho2588 COG0174 E Glutamine synthetase 2965821 2967185 + oxidoreductase, FAD-binding, putative 435 cho2589 2967192 2968496 + DegT/DnrJ/EryC1/StrS aminotransferase 394 cho2590 COG0399 M Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 2968592 2969773 + hypothetical protein RSP_2240 139 cho2591 COG1832 R Predicted CoA-binding protein 2969894 2970310 - 650 cho2592 2970624 2972573 + 547 cho2593 2972815 2974455 + putative O-acetylhomoserine sulfhydrylase 427 cho2594 COG2873 E O-acetylhomoserine sulfhydrylase 2974560 2975840 + sodium/hydrogen exchanger 631 cho2597 2979315 2981207 + putative CarD-like transcriptional regulator 169 cho2598 COG1329 K Transcriptional regulators, similar to M. xanthus CarD 2981294 2981800 - 4Fe-4S ferredoxin, iron-sulfur binding 112 cho2599 COG1146 C Ferredoxin 2982193 2982528 - 92 cho2600 COG1188 J Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 2982892 2983167 - helicase, putative 947 cho2601 2983174 2986014 - hypothetical protein RSP_2421 186 cho2602 2986105 2986662 - putative Esterase/lipase/thioesterase 312 cho2603 COG2267 I Lysophospholipase 2987010 2987945 + hypothetical protein RSP_2420 262 cho2604 2988184 2988969 - hypothetical protein RSP_2417 270 cho2605 COG1305 E Transglutaminase-like enzymes, putative cysteine proteases 2988938 2989747 - hypothetical protein RSP_2415 470 cho2607 COG2308 S Uncharacterized conserved protein 2990705 2992114 - Oligoendopeptidase F 608 cho2608 COG1164 E Oligoendopeptidase F 2992318 2994141 + renal dipeptidase family protein 391 cho2609 COG2355 E Zn-dependent dipeptidase, microsomal dipeptidase homolog 2994212 2995384 + hypothetical protein TM1040_0616 271 cho2610 2995610 2996422 - hypothetical protein RD1_3503 253 cho2611 COG1496 S Uncharacterized conserved protein 2997104 2997862 - protein of unknown function DUF185 356 cho2612 COG1565 S Uncharacterized conserved protein 2997869 2998936 - prolipoprotein diacylglyceryl transferase, putative 294 cho2613 COG0682 M Prolipoprotein diacylglyceryltransferase 2998936 2999817 - hypothetical protein RD1_3500 79 cho2614 2999952 3000188 + ribosomal large subunit pseudouridine synthase D 380 cho2615 COG0564 J Pseudouridylate synthases, 23S RNA-specific 3000680 3001819 + RNA polymerase sigma-32 factor 299 cho2616 COG0568 K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 3001959 3002855 + oxidoreductase-like 323 cho2617 3002910 3003878 + Proline dehydrogenase transcriptional activator 166 cho2618 3004060 3004557 - Thioredoxin reductase 408 cho2619 COG0492 O Thioredoxin reductase 3004457 3005680 + 151 cho2620 3005739 3006191 - binfunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 568 cho2621 COG2046 P ATP sulfurylase (sulfate adenylyltransferase) 3006432 3008135 + 75 cho2622 3008431 3008655 - heat shock protein, Hsp20 family 137 cho2623 COG0071 O Molecular chaperone (small heat shock protein) 3008668 3009078 - 76 cho2624 3009301 3009528 + phosphoribosylaminoimidazole carboxylase, catalytic subunit 161 cho2625 COG0041 F Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 3009586 3010068 + phosphoribosylaminoimidazole carboxylase, ATPase subunit 370 cho2626 COG0026 F Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 3010016 3011125 + acetyltransferases and hydrolases with the alpha/beta hydrolase fold-like 241 cho2627 3011273 3011995 - Phosphoribosyl pyrophosphate synthetase 339 cho2628 COG0462 FE Phosphoribosylpyrophosphate synthetase 3012038 3013054 - 2-hydroxychromene-2-carboxylate isomerase 203 cho2629 3013162 3013770 + alpha/beta hydrolase fold 270 cho2630 3013773 3014582 + Fumarate lyase 464 cho2631 COG0114 C Fumarase 3014628 3016019 - 162 cho2632 3016108 3016593 - hypothetical protein RSP_2139 153 cho2633 3016705 3017163 - hypothetical protein AGR_L_2203 426 cho2634 COG1253 R Hemolysins and related proteins containing CBS domains 3017875 3019152 + hypothetical protein RD1_1384 332 cho2635 3019192 3020187 - PTS system, IIA component 133 cho2636 COG2893 G Phosphotransferase system, mannose/fructose-specific component IIA 3020347 3020745 - hypothetical protein RSP_1684 312 cho2637 COG1660 R Predicted P-loop-containing kinase 3020745 3021680 - 139 cho2638 COG1493 T Serine kinase of the HPr protein, regulates carbohydrate metabolism 3021656 3022072 - sensor histidine kinase ChvG 557 cho2639 3022079 3023749 - DNA-binding response regulator ChvI 233 cho2640 3023819 3024517 - phosphoenolpyruvate carboxykinase 532 cho2641 COG1866 C Phosphoenolpyruvate carboxykinase (ATP) 3024845 3026440 + ribonuclease R 788 cho2642 COG0557 K Exoribonuclease R 3026508 3028871 - 223 cho2643 COG0746 H Molybdopterin-guanine dinucleotide biosynthesis protein A 3028759 3029427 + UBA/THIF-type NAD/FAD binding protein 252 cho2644 COG0476 H Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 3029891 3030646 - 82 cho2645 COG1977 H Molybdopterin converting factor, small subunit 3030651 3030896 - molybdenum cofactor biosynthesis protein A 335 cho2646 COG2896 H Molybdenum cofactor biosynthesis enzyme 3030901 3031905 - hypothetical protein BRA0294 188 cho2647 3031898 3032461 - DMSO/TMAO-reductase 823 cho2648 3032570 3035038 - DMSO-membrane protein 209 cho2649 3035038 3035664 - DMSO/TMAO pentaheme cytochrome c subunit 382 cho2650 COG3005 C Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit 3035664 3036809 - DMSO/TMAO-two component transcriptional regulator, winged helix family 232 cho2651 3037034 3037729 + DMSO/TMAO-sensor hybrid histidine kinase 854 cho2652 3037970 3040531 - hydroxyethylthiazole kinase 268 cho2653 COG2145 H Hydroxyethylthiazole kinase, sugar kinase family 3040820 3041623 + Thiamine-phosphate pyrophosphorylase 203 cho2654 COG0352 H Thiamine monophosphate synthase 3041623 3042231 + phosphomethylpyrimidine kinase 265 cho2655 COG0351 H Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 3042231 3043025 + ABC transporter, substrate-binding protein 307 cho2656 3043030 3043950 + ABC transporter, ATPase subunit 229 cho2657 3043950 3044636 + putative ABC transporter permease protein 239 cho2658 3044636 3045352 + 412 cho2659 3045374 3046609 - 1158 cho2660 3046948 3050421 + 115 cho2661 3050435 3050779 - Acetate--CoA ligase 690 cho2662 COG0365 I Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 3050999 3053068 + hypothetical protein XAC4177 102 cho2663 3053306 3053611 + acetate permease 578 cho2664 COG4147 R Predicted symporter 3053611 3055344 + Predicted signal transduction protein containing cyclic nucleotide-binding and CBS domains 608 cho2665 3055418 3057241 + 149 cho2666 3057246 3057692 + 704 cho2667 3057695 3059806 + pyruvate formate lyase activating enzyme 262 cho2668 COG1180 O Pyruvate-formate lyase-activating enzyme 3059823 3060608 - Formate acetyltransferase 755 cho2669 COG1882 C Pyruvate-formate lyase 3060618 3062882 - hypothetical protein RSP_1017 259 cho2670 3063275 3064051 - Glycolate oxidase iron-sulfur subunit 427 cho2671 COG0247 C Fe-S oxidoreductase 3064103 3065383 - putative glycolate oxidase subunit protein 362 cho2672 3065386 3066471 - glycolate oxidase, subunit GlcD 476 cho2673 3066517 3067944 - hypothetical protein RSP_6083 324 cho2674 3068239 3069210 - ABC transporter related 217 cho2675 COG1134 GM ABC-type polysaccharide/polyol phosphate transport system, ATPase component 3069327 3069977 + Capsule polysaccharide export protein-like 631 cho2676 3069964 3071856 + 2-dehydro-3-deoxyphosphooctonate aldolase 277 cho2677 COG2877 M 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 3071874 3072704 + hypothetical protein plu3147 292 cho2678 COG1830 G DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes 3072879 3073754 - hypothetical protein PM1277 344 cho2679 3073852 3074883 - ABC transporter permease protein (IM) LsrD 350 cho2680 3074962 3076011 - putative ABC transporter permease protein 343 cho2681 3076011 3077039 - ribose ABC transporter, ATP-binding protein, putative 498 cho2682 3077039 3078532 - 241 cho2683 COG0036 G Pentose-5-phosphate-3-epimerase 3078528 3079250 - 105 cho2684 COG1359 S Uncharacterized conserved protein 3079258 3079572 - LsrR DNA-binding protein 318 cho2685 COG2390 K Transcriptional regulator, contains sigma factor-related N-terminal domain 3079871 3080824 + Carbohydrate kinase, FGGY 521 cho2686 COG1070 G Sugar (pentulose and hexulose) kinases 3080827 3082389 + PUTATIVE OXIDOREDUCTASE PROTEIN 831 cho2687 3082437 3084929 - probable transcriptional regulator 184 cho2688 3085118 3085669 + 792 cho2689 3085784 3088159 + 152 cho2690 3088514 3088969 + 127 cho2691 3089228 3089608 - secretion protein HlyD 373 cho2692 3090967 3092085 + Hydrophobe/amphiphile efflux-1 HAE1 1030 cho2693 3092098 3095187 + two component transcriptional regulator, winged helix family 232 cho2694 3095187 3095882 + two component sensor histidine kinase, possible AdeS 364 cho2695 3095875 3096966 + ABC transporter ATP-binding protein 593 cho2696 3096959 3098737 + 266 cho2698 3100497 3101294 - 87 cho2699 3101473 3101733 - 448 cho2700 3101746 3103089 - Phage-related protein tail component-like protein 1038 cho2701 3103094 3106207 - 128 cho2702 3106207 3106590 - hypothetical protein amb1190 175 cho2703 3106590 3107114 - 299 cho2704 3107110 3108006 - 772 cho2705 3108012 3110327 - 46 cho2706 3110340 3110477 - 145 cho2707 3110504 3110938 - 321 cho2708 3110946 3111908 - 142 cho2709 3112548 3112973 - 79 cho2710 3113096 3113332 - hypothetical protein RPC_1560 324 cho2711 3113398 3114369 - 127 cho2712 3114396 3114776 - Mu-like prophage I protein 366 cho2713 3114776 3115873 - 182 cho2714 3115982 3116527 - 98 cho2715 3116774 3117067 - 111 cho2716 3117290 3117622 - 85 cho2717 3117625 3117879 - 249 cho2718 3117975 3118721 + 86 cho2719 3123457 3123714 - Resolvase, N-terminal domain protein 183 cho2720 3123754 3124302 - 452 cho2721 3124930 3126285 - phage integrase 463 cho2722 3126370 3127758 - protein of unknown function DUF159 210 cho2723 COG2135 S Uncharacterized conserved protein 3128188 3128817 + 191 cho2724 3130831 3131403 - hypothetical protein DVU2837 355 cho2725 3131619 3132683 - 149 cho2726 3132808 3133254 - 166 cho2727 3133736 3134233 - 236 cho2728 3134239 3134946 - 81 cho2729 3134946 3135188 - 187 cho2730 3135715 3136275 - 238 cho2731 3136280 3136993 - 122 cho2732 3137540 3137905 - 215 cho2733 3137908 3138552 - 62 cho2734 3139467 3139652 - 248 cho2735 3139742 3140485 - phage integrase 430 cho2736 3140489 3141778 - MscS Mechanosensitive ion channel 827 cho2737 COG3264 M Small-conductance mechanosensitive channel 3142130 3144610 - O-acetylserine (Thiol)-lyase, cysteine synthase 342 cho2738 COG0031 E Cysteine synthase 3144610 3145635 - tellurite resistance protein TrgB 380 cho2739 3145703 3146842 - 158 cho2740 3146872 3147345 - Deoxyribodipyrimidine photolyase 483 cho2741 COG0415 L Deoxyribodipyrimidine photolyase 3147414 3148862 - ABC polyamine transporter, periplasmic substrate-binding protein 350 cho2742 3148997 3150046 + N-acylneuraminate-9-phosphate synthase 342 cho2743 COG2089 M Sialic acid synthase 3150158 3151183 + 263 cho2744 COG3306 M Glycosyltransferase involved in LPS biosynthesis 3151168 3151956 + Lipopolysaccharide biosynthesis protein-like 383 cho2745 3152002 3153150 + 579 cho2746 COG0381 M UDP-N-acetylglucosamine 2-epimerase 3153402 3155138 + 315 cho2747 3155147 3156091 - short chain dehydrogenase 263 cho2748 3156088 3156876 - acylneuraminate cytidylyltransferase 234 cho2749 3156881 3157582 - 299 cho2750 3157582 3158478 - hypothetical protein SPO3160 116 cho2751 3158555 3158902 - 132 cho2752 COG0355 C F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 3159031 3159426 - ATP synthase subunit B 472 cho2753 COG0055 C F0F1-type ATP synthase, beta subunit 3159439 3160854 - ATP synthase subunit C 290 cho2754 COG0224 C F0F1-type ATP synthase, gamma subunit 3160879 3161748 - ATP synthase F1, alpha subunit 509 cho2755 COG0056 C F0F1-type ATP synthase, alpha subunit 3161772 3163298 - ATP synthase F1, delta subunit 222 cho2756 COG0712 C F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 3163302 3163967 - hypothetical protein CC0520 363 cho2757 3164174 3165262 - ATP-dependent Clp protease ATP-binding subunit clpA 773 cho2758 COG0542 O ATPases with chaperone activity, ATP-binding subunit 3165936 3168254 + peptidase M23B 334 cho2759 COG0739 M Membrane proteins related to metalloendopeptidases 3168376 3169377 + 324 cho2760 COG0522 J Ribosomal protein S4 and related proteins 3169214 3170185 + 128 cho2761 3170262 3170645 - histidinol-phosphate aminotransferase 363 cho2762 COG0079 E Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 3170875 3171963 + prephenate dehydrogenase 309 cho2763 COG0287 E Prephenate dehydrogenase 3171963 3172889 + 330 cho2764 3174071 3175060 - hypothetical protein TM1040_2096 401 cho2765 3175713 3176915 + flagellar motor protein 422 cho2766 3176920 3178185 + hypothetical protein TM1040_2108 366 cho2767 3178438 3179535 - hypothetical protein TM1040_2109 306 cho2768 3179669 3180586 - hypothetical protein Nham_1120 159 cho2769 COG2606 S Uncharacterized conserved protein 3180681 3181157 - 3-hydroxyacyl-CoA dehydrogenase, putative 255 cho2770 3181308 3182072 + PhbA-2, acetyl-CoA acetyltransferase 390 cho2771 3182087 3183256 + dihydroxy-acid dehydratase 611 cho2772 COG0129 EG Dihydroxyacid dehydratase/phosphogluconate dehydratase 3183534 3185366 + Exopolysaccharide synthesis, ExoD 227 cho2773 3185433 3186113 - 62 cho2774 3186353 3186538 + 72 cho2776 3186538 3186753 + phospholipid/glycerol acyltransferase 276 cho2775 COG0204 I 1-acyl-sn-glycerol-3-phosphate acyltransferase 3186744 3187571 - hypothetical protein RSP_3826 259 cho2777 3187571 3188347 - 59 cho2778 3188492 3188668 - hypothetical protein RSP_3825 210 cho2779 3188709 3189338 + Gamma-glutamyl phosphate reductase GPR 421 cho2780 COG0014 E Gamma-glutamyl phosphate reductase 3189425 3190687 - 376 cho2781 3190934 3192061 + 330 cho2782 3192602 3193591 - 838 cho2783 3193591 3196104 - ApbE-like lipoprotein 316 cho2784 COG1477 H Membrane-associated lipoprotein involved in thiamine biosynthesis 3196204 3197151 - oxidoreductase, FAD-binding, putative 735 cho2785 COG0369 P Sulfite reductase, alpha subunit (flavoprotein) 3197135 3199339 - hypothetical protein BRA0232 155 cho2786 3199368 3199832 - 136 cho2787 3199846 3200253 - periplasmic sensor signal transduction histidine kinase 507 cho2788 3201333 3202853 + 1118 cho2789 3202957 3206310 + NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 274 cho2791 3208288 3209109 + ADP-ribosyl-(dinitrogen reductase) hydrolase 291 cho2793 3209124 3209996 + ADP-ribosylation/Crystallin J1 447 cho2792 3209966 3211306 - TRAP-T family C4-dicarboxylate transporter, DctM (12TMs) subunit 440 cho2794 3212667 3213986 - TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunit 227 cho2795 COG3090 G TRAP-type C4-dicarboxylate transport system, small permease component 3213991 3214671 - TRAP-T family transporter, C4-dicarboxylate-binding protein DctP 333 cho2796 3214732 3215730 - multisensor signal transduction histidine kinase 624 cho2797 3215969 3217840 + two component transcriptional regulator, LuxR family 197 cho2798 COG4566 T Response regulator 3217840 3218430 + hypothetical protein RD1_0215 409 cho2799 3218470 3219696 + phage SPO1 DNA polymerase-related protein 271 cho2801 3219699 3220511 + hypothetical protein Mfla_0171 325 cho2800 3220514 3221488 - 93 cho2802 3221540 3221818 - putative negative regulator protein PspA (suppresses sigma54-dependent transcription) 225 cho2803 3221864 3222538 - probable transcriptional regulator protein, TetR family 207 cho2804 3222631 3223251 + 71 cho2805 3223270 3223482 - formate dehydrogenase accessory protein 255 cho2806 COG1526 C Uncharacterized protein required for formate dehydrogenase activity 3223482 3224246 - formate dehydrogenase, alpha subunit 958 cho2807 3224246 3227119 - NADH dehydrogenase (quinone) 500 cho2808 COG1894 C NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit 3227119 3228618 - ATP synthase subunit E 150 cho2809 COG1905 C NADH:ubiquinone oxidoreductase 24 kD subunit 3228618 3229067 - molybdopterin biosynthesis MoaE 148 cho2810 COG0314 H Molybdopterin converting factor, large subunit 3229154 3229597 - molybdopterin converting factor, subunit 1 82 cho2811 COG1977 H Molybdopterin converting factor, small subunit 3229602 3229847 - Thymidylate synthase (FAD) 304 cho2812 COG1351 F Predicted alternative thymidylate synthase 3230868 3231779 - 378 cho2813 3231778 3232911 + 476 cho2814 3232901 3234328 + 527 cho2815 3234696 3236276 + Putative GTP-binding protein 365 cho2816 COG0012 J Predicted GTPase, probable translation factor 3236285 3237379 - tryptophan synthase subunit alpha 263 cho2817 COG0159 E Tryptophan synthase alpha chain 3237529 3238317 + Lactate dehydrogenase 387 cho2818 COG1304 C L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases 3238496 3239656 + major facilitator superfamily MFS_1 437 cho2819 3239699 3241009 - peptidyl-tRNA hydrolase 229 cho2820 COG0193 J Peptidyl-tRNA hydrolase 3241870 3242556 + 281 cho2821 3242572 3243414 - RNA polymerase sigma factor 674 cho2822 COG0568 K DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 3243617 3245638 - DNA primase 654 cho2823 COG0358 L DNA primase (bacterial type) 3245766 3247727 - 647 cho2824 3248025 3249965 + 184 cho2825 3249977 3250528 + 220 cho2826 3250539 3251198 + transcriptional regulator, TetR family 195 cho2827 3251222 3251806 - 65 cho2828 3251903 3252097 + homoserine dehydrogenase 432 cho2829 COG0460 E Homoserine dehydrogenase 3252176 3253471 + fructose-1,6-bisphosphatase, class II 321 cho2830 COG1494 G Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins 3253637 3254599 + single-stranded-DNA-specific exonuclease RecJ 577 cho2831 COG0608 L Single-stranded DNA-specific exonuclease 3254785 3256515 + HPP family/CBS domain protein 381 cho2832 3256814 3257956 - hypothetical protein MAP1762c 656 cho2833 3258113 3260080 + dyp-type peroxidase family protein 432 cho2834 COG2837 P Predicted iron-dependent peroxidase 3260085 3261380 + Protein of unknown function DUF451 267 cho2835 3261399 3262199 + Cache sensor protein 699 cho2836 3262332 3264428 + 103 cho2838 3264615 3264923 + hypothetical protein RSP_0751 175 cho2837 3264926 3265450 - 125 cho2839 3265434 3265808 + 117 cho2840 3266124 3266474 - NusB antitermination factor 165 cho2841 COG0781 K Transcription termination factor 3266606 3267100 - Riboflavin synthase 171 cho2842 COG0054 H Riboflavin synthase beta-chain 3267130 3267642 - 3,4-dihydroxy-2-butanone 4-phosphate synthase 377 cho2843 COG0108 H 3,4-dihydroxy-2-butanone 4-phosphate synthase 3267647 3268777 - riboflavin synthase, alpha subunit 196 cho2844 COG0307 H Riboflavin synthase alpha chain 3268777 3269364 - Capsule polysaccharide biosynthesis 428 cho2845 3269576 3270859 + polysaccharide export protein 378 cho2846 COG1596 M Periplasmic protein involved in polysaccharide export 3270936 3272069 + Capsule polysaccharide biosynthesis 671 cho2848 3272072 3274084 + hypothetical protein RD1_1798 155 cho2850 COG1327 K Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 3275187 3275651 - 122 cho2851 3275810 3276175 - 36 cho2852 3276427 3276534 - hypothetical protein AGR_L_1527 385 cho2853 COG1294 C Cytochrome bd-type quinol oxidase, subunit 2 3276550 3277704 - cytochrome d ubiquinol oxidase, subunit I 526 cho2854 COG1271 C Cytochrome bd-type quinol oxidase, subunit 1 3277712 3279289 - hypothetical protein RD1_2154 252 cho2855 3279513 3280268 - putative acetyltransferase, GNAT family 161 cho2856 COG3153 R Predicted acetyltransferase 3280324 3280806 - hypothetical protein TM1040_2319 196 cho2857 3280884 3281471 + putative glycosyl transferase 413 cho2858 3281719 3282957 - protein of unknown function DUF6, transmembrane 295 cho2859 3283043 3283927 - 5,-methylthioadenosine phosphorylase 316 cho2860 COG0005 F Purine nucleoside phosphorylase 3283978 3284925 + adenine phosphoribosyltransferase 176 cho2861 COG0503 F Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 3284932 3285459 + FAD linked oxidase-like 469 cho2862 3285709 3287115 - putative ribosomal-protein-alanine acetyltransferase 194 cho2863 3287223 3287804 - peptidase, M16 family 419 cho2864 COG0612 R Predicted Zn-dependent peptidases 3287807 3289063 - threonine synthase 468 cho2865 COG0498 E Threonine synthase 3289063 3290466 - TldD protein 473 cho2866 COG0312 R Predicted Zn-dependent proteases and their inactivated homologs 3290628 3292046 + DNA processing protein DprA, putative 383 cho2867 COG0758 LU Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 3292254 3293402 + 147 cho2868 3293438 3293878 - DNA topoisomerase I 879 cho2869 COG0550 L Topoisomerase IA 3293992 3296628 + 3-oxoadipate CoA-succinyl transferase, alpha subunit 254 cho2870 COG1788 I Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 3296707 3297468 + integral membrane protein 346 cho2872 COG0392 S Predicted integral membrane protein 3298271 3299308 + FAD linked oxidase-like 431 cho2873 3299321 3300613 + Short-chain dehydrogenase/reductase SDR 243 cho2874 3300618 3301346 + enoyl-CoA hydratase/isomerase 261 cho2875 3301353 3302135 - histidinol-phosphate aminotransferase 371 cho2876 COG0079 E Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 3302253 3303365 + 132 cho2877 COG3544 S Uncharacterized protein conserved in bacteria 3303453 3303848 + Serine-pyruvate aminotransferase/aspartate aminotransferase 399 cho2878 COG0075 E Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 3303858 3305054 - ABC lipid efflux transporter, fused ATPase and inner membrane subunits 592 cho2879 3305179 3306954 + glycine cleavage T protein (aminomethyl transferase) 247 cho2880 COG0354 R Predicted aminomethyltransferase related to GcvT 3306994 3307734 + hypothetical protein RD1_1745 122 cho2881 3307989 3308354 + 537 cho2882 3308473 3310083 - Outer membrane efflux protein 465 cho2883 COG1538 MU Outer membrane protein 3310218 3311612 - protein-L-isoaspartate O-methyltransferase, putative 248 cho2884 COG2518 O Protein-L-isoaspartate carboxylmethyltransferase 3311720 3312463 - 259 cho2885 3313023 3313799 - hypothetical protein Saro_0258 207 cho2886 3313887 3314507 + Ion transport 2 253 cho2887 COG1226 P Kef-type K+ transport systems, predicted NAD-binding component 3314729 3315487 - ABC transporter, ATP-binding protein 551 cho2888 COG0488 R ATPase components of ABC transporters with duplicated ATPase domains 3315583 3317235 + GTP-binding protein LepA 599 cho2889 COG0481 M Membrane GTPase LepA 3318832 3320628 - 103 cho2890 3320895 3321203 + 62 cho2891 COG2608 P Copper chaperone 3321294 3321479 + 98 cho2893 3321650 3321943 + low molecular weight phosphotyrosine protein phosphatase 149 cho2892 COG0394 T Protein-tyrosine-phosphatase 3321934 3322380 - NAD-dependent deacetylase 230 cho2894 COG0846 K NAD-dependent protein deacetylases, SIR2 family 3322409 3323098 + 50S ribosomal protein L28 95 cho2895 COG0227 J Ribosomal protein L28 3323225 3323509 + arginine/ornithine transport system ATPase 329 cho2896 COG1703 E Putative periplasmic protein kinase ArgK and related GTPases of G3E family 3323584 3324570 - hypothetical protein RSP_2014 263 cho2897 3324638 3325426 + ATP-dependent helicase HrpB 812 cho2899 COG1643 L HrpA-like helicases 3325426 3327861 + putative isochorismatase family protein 197 cho2898 3327864 3328454 - cytochrome c-type biogenesis protein 653 cho2902 COG1138 O Cytochrome c biogenesis factor 3330967 3332925 + Cytochrome c maturation protein, CcmH 149 cho2903 COG3088 O Uncharacterized protein involved in biosynthesis of c-type cytochromes 3332932 3333378 + Enoyl-CoA hydratase/isomerase 257 cho2904 3333547 3334317 + ABC efflux transporter, fused ATPase and inner membrane subunits 595 cho2905 3334522 3336306 + acyl-CoA synthase 651 cho2906 3336374 3338326 + 68 cho2907 3338516 3338719 - hypothetical protein TM1040_0649 464 cho2908 COG0621 J 2-methylthioadenine synthetase 3338907 3340298 - transcriptional regulator, AsnC family 179 cho2909 3342417 3342953 - 4-aminobutyrate aminotransferase 427 cho2910 COG0160 E 4-aminobutyrate aminotransferase and related aminotransferases 3342961 3344241 - probable transcriptional regulator protein, MerR family 273 cho2911 3344353 3345171 + 137 cho2912 COG3187 O Heat shock protein 3345273 3345683 + Rhomboid-like protein 241 cho2914 COG0705 R Uncharacterized membrane protein (homolog of Drosophila rhomboid) 3345726 3346448 + dehydrogenase (polyethylene glycol dehydrogenase, alcohol dehydrogenase, L-sorbose dehydrogenase) 533 cho2913 3346451 3348049 - phenylalanyl-tRNA synthetase beta subunit 806 cho2915 COG0072 J Phenylalanyl-tRNA synthetase beta subunit 3348116 3350533 - Phenylalanyl-tRNA synthetase alpha subunit 360 cho2916 COG0016 J Phenylalanyl-tRNA synthetase alpha subunit 3351356 3352435 - 50S ribosomal protein L20 121 cho2917 COG0292 J Ribosomal protein L20 3352563 3352925 - 50S ribosomal protein L35 66 cho2918 COG0291 J Ribosomal protein L35 3352945 3353142 - 76 cho2919 3353260 3353487 - Pyruvate kinase 481 cho2920 COG0469 G Pyruvate kinase 3353520 3354962 - N-formylglutamate amidohydrolase 248 cho2921 COG3931 E Predicted N-formylglutamate amidohydrolase 3355096 3355839 + RTX toxins and related Ca2+-binding proteins-like 730 cho2922 3355966 3358155 + 117 cho2923 3358354 3358704 + Aminotransferase class IV , putative D-alanine aminotransferase 286 cho2924 COG0115 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 3358782 3359639 - hypothetical protein RD1_1003 320 cho2925 3359655 3360614 - hypothetical protein SPO3607 335 cho2926 COG3367 S Uncharacterized conserved protein 3360688 3361692 - citrate lyase, beta subunit, putative 348 cho2927 COG2301 G Citrate lyase beta subunit 3361872 3362915 + acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 320 cho2928 COG0825 I Acetyl-CoA carboxylase alpha subunit 3363153 3364112 + acyltransferase, putative 243 cho2929 COG0204 I 1-acyl-sn-glycerol-3-phosphate acyltransferase 3364188 3364916 - protein of unknown function DUF214 296 cho2930 3364919 3365806 - ABC transporter related 223 cho2931 COG2884 D Predicted ATPase involved in cell division 3365809 3366477 - 433 cho2932 3366618 3367916 + diaminopimelate decarboxylase 422 cho2934 COG0019 E Diaminopimelate decarboxylase 3370539 3371804 - 66 cho2935 3371866 3372063 - 46 cho2936 3372063 3372200 - argininosuccinate lyase 465 cho2937 COG0165 E Argininosuccinate lyase 3372217 3373611 - thiol:disulfide interchange protein, putative 181 cho2938 COG0526 OC Thiol-disulfide isomerase and thioredoxins 3373637 3374179 + hypothetical protein TM1040_0580 411 cho2939 3374186 3375418 - diguanylate phosphodiesterase 280 cho2940 3375595 3376434 + Acetyl-CoA C-acetyltransferase 391 cho2941 COG0183 I Acetyl-CoA acetyltransferase 3376591 3377763 + Short-chain dehydrogenase/reductase 240 cho2942 3377872 3378591 + hypothetical protein SPO0323 287 cho2943 3378658 3379518 + 57 cho2944 3379552 3379722 - N-6 Adenine-specific DNA methylase 253 cho2945 COG4123 R Predicted O-methyltransferase 3379849 3380607 - Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase 333 cho2946 COG0142 H Geranylgeranyl pyrophosphate synthase 3380892 3381890 + 549 cho2947 3382125 3383771 - hypothetical protein TM1040_2355 436 cho2948 3383876 3385183 + 309 cho2949 3385203 3386129 - Methenyltetrahydrofolate cyclohydrolase 312 cho2950 COG0190 H 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 3386271 3387206 - formate-tetrahydrofolate ligase, FTHFS 557 cho2951 COG2759 F Formyltetrahydrofolate synthetase 3387528 3389198 - 447 cho2952 3389437 3390777 + ATP-dependent metalloprotease FtsH 642 cho2953 COG0465 O ATP-dependent Zn proteases 3390861 3392786 - PP-loop family protein 429 cho2954 COG0037 D Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 3392836 3394122 - hypothetical protein RSP_0667 365 cho2955 COG1729 S Uncharacterized protein conserved in bacteria 3394122 3395216 - translocation protein TolB precursor 437 cho2956 COG0823 U Periplasmic component of the Tol biopolymer transport system 3395546 3396856 - tonB domain protein, putative 439 cho2957 3396950 3398266 - biopolymer transport protein, ExbD/TolR family 168 cho2958 COG0848 U Biopolymer transport protein 3398278 3398781 - MotA/TolQ/ExbB proton channel 234 cho2959 COG0811 U Biopolymer transport proteins 3398788 3399489 - Putative thioesterase 133 cho2960 COG0824 R Predicted thioesterase 3399617 3400015 - hypothetical protein RSP_6118 215 cho2961 3400015 3400659 - glycerol kinase 490 cho2962 COG0554 C Glycerol kinase 3400719 3402188 - putative FAD-dependent glycerol-3-phosphate dehydrogenase 569 cho2963 COG0578 C Glycerol-3-phosphate dehydrogenase 3402188 3403894 - isoleucyl-tRNA synthetase 997 cho2964 COG0060 J Isoleucyl-tRNA synthetase 3403978 3406968 + possible transporter, DMT superfamily 279 cho2966 3407176 3408012 + putative phosphatidylcholine synthase 232 cho2965 3408015 3408710 - 208 cho2967 3408796 3409419 - tyrosine recombinase XerC 405 cho2968 3409557 3410771 - transaldolase 217 cho2969 COG0176 G Transaldolase 3411310 3411960 - primosomal protein N, 727 cho2970 COG1198 L Primosomal protein N' (replication factor Y) - superfamily II helicase 3412167 3414347 + ribosomal protein L11 methyltransferase, putative 289 cho2971 COG2264 J Ribosomal protein L11 methylase 3414415 3415281 + 115 cho2972 3415383 3415727 + 62 cho2973 COG5457 S Uncharacterized conserved small protein 3415797 3415982 - Holliday junction resolvase 183 cho2974 COG0817 L Holliday junction resolvasome, endonuclease subunit 3416321 3416869 + Holliday junction DNA helicase RuvA 222 cho2975 COG0632 L Holliday junction resolvasome, DNA-binding subunit 3416869 3417534 + Holliday junction DNA helicase RuvB 345 cho2976 COG2255 L Holliday junction resolvasome, helicase subunit 3417606 3418640 + hypothetical protein SPO3139 136 cho2977 3418679 3419086 + hypothetical protein RD1_2073 334 cho2978 COG3768 S Predicted membrane protein 3419148 3420149 - hypothetical protein SPO3142 498 cho2979 COG3106 R Predicted ATPase 3420149 3421642 - Pseudouridylate synthase 311 cho2980 COG0101 J Pseudouridylate synthase 3421509 3422441 + Nucleotide sugar epimerase/dehydratase 644 cho2981 COG1086 MG Predicted nucleoside-diphosphate sugar epimerases 3422449 3424380 - sugar transferase 201 cho2982 COG2148 M Sugar transferases involved in lipopolysaccharide synthesis 3424514 3425116 - 294 cho2983 3425116 3425997 - 374 cho2984 COG1596 M Periplasmic protein involved in polysaccharide export 3426082 3427203 + branched-chain amino acid aminotransferase 288 cho2985 COG0115 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 3427288 3428151 + NifU-like domain protein 188 cho2988 COG0694 O Thioredoxin-like proteins and domains 3428730 3429293 + peptidase M22, glycoprotease 210 cho2989 COG1214 O Inactive homolog of metal-dependent proteases, putative molecular chaperone 3429286 3429915 + 139 cho2990 COG0456 R Acetyltransferases 3429918 3430334 + putative sugar ABC transporter, periplasmic sugar-binding protein 364 cho2991 COG1744 R Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 3430473 3431564 + ABC sugar transporter, fused ATPase subunits 530 cho2992 COG3845 R ABC-type uncharacterized transport systems, ATPase components 3431567 3433156 + sugar ABC transporter, permease protein 367 cho2993 COG4603 R ABC-type uncharacterized transport system, permease component 3433159 3434259 + putative sugar ABC transporter, permease protein 324 cho2994 COG1079 R Uncharacterized ABC-type transport system, permease component 3434262 3435233 + purine nucleoside phosphorylase 266 cho2995 COG0005 F Purine nucleoside phosphorylase 3435220 3436017 + protein of unknown function DUF81 306 cho2996 COG0730 R Predicted permeases 3436093 3437010 + hypothetical protein Jann_0844 252 cho2997 3437010 3437765 + RAM domain protein 78 cho2998 3437777 3438010 - ATPase 513 cho2999 3438086 3439624 - methylmalonyl-CoA mutase 657 cho3000 COG1884 I Methylmalonyl-CoA mutase, N-terminal domain/subunit 3439790 3441760 - 110 cho3001 3441970 3442299 + alcohol dehydrogenase 430 cho3002 3442481 3443770 + sugar ABC transporter, ATP binding protein 402 cho3004 3443923 3445128 + predicted Glycosyl transferase, family 2 223 cho3003 3445131 3445799 - putative ceramide glucosyltransferase 370 cho3005 COG1215 M Glycosyltransferases, probably involved in cell wall biogenesis 3445806 3446915 - hypothetical protein RSP_2153 265 cho3006 COG2908 S Uncharacterized protein conserved in bacteria 3446915 3447709 - hypothetical protein RSP_2173 190 cho3007 COG1268 R Uncharacterized conserved protein 3447897 3448466 - Putative ABC transporter, inner membrane subunit 210 cho3008 COG0619 P ABC-type cobalt transport system, permease component CbiQ and related transporters 3448459 3449088 - ABC transporter, ATPase subunit 234 cho3009 3449085 3449786 - ABC transporter, ATP-binding protein CydD 649 cho3010 COG4988 CO ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 3449689 3451635 + ATP-binding component of cytochrome-related transport 553 cho3011 COG4987 CO ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components 3451635 3453293 + cytochrome P450 family protein 532 cho3012 3453312 3454907 - cytochrome P450 472 cho3013 3455671 3457086 - peptide methionine sulfoxide reductase protein 222 cho3014 COG0225 O Peptide methionine sulfoxide reductase 3457175 3457840 - putative transmembrane protein 612 cho3015 3457855 3459690 - Protein-methionine-S-oxide reductase 156 cho3016 COG0229 O Conserved domain frequently associated with peptide methionine sulfoxide reductase 3459697 3460164 - hypothetical protein RSP_3070 321 cho3017 3460255 3461217 - 68 cho3018 3461350 3461553 - hypothetical protein RSP_0542 277 cho3019 3461716 3462546 - 70 cho3020 3462552 3462761 - 117 cho3021 3462761 3463111 - hypothetical protein RSP_0545 245 cho3022 3463118 3463852 - NifB family--FeMo cofactor biosynthesis protein 497 cho3023 3463863 3465353 - 112 cho3025 3467504 3467839 - 2-isopropylmalate synthase 381 cho3026 COG0119 E Isopropylmalate/homocitrate/citramalate synthases 3467872 3469014 - cysteine desulfurase 386 cho3027 COG1104 E Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 3469029 3470186 - 135 cho3028 COG0694 O Thioredoxin-like proteins and domains 3470192 3470596 - hypothetical protein RSP_0532 106 cho3029 COG0316 S Uncharacterized conserved protein 3470610 3470927 - 187 cho3030 3471097 3471657 - putative dimeric ferredoxin (FdIII) 102 cho3031 3472059 3472364 - 65 cho3032 3472378 3472572 - hypothetical protein RSP_0535 154 cho3033 3472577 3473038 - putative nitrogenase molybdenum-iron protein NifX 159 cho3034 3473047 3473523 - nitrogenase molybdenum-iron protein beta chain, nifN 461 cho3035 3473501 3474883 - nifE, nitrogenase molybdenum-cofactor synthesis protein 522 cho3036 3474888 3476453 - antioxidant, AhpC/Tsa family 179 cho3037 COG0678 O Peroxiredoxin 3476626 3477162 - putative thaimine biosynthesis protein 366 cho3038 COG1477 H Membrane-associated lipoprotein involved in thiamine biosynthesis 3477317 3478414 - 159 cho3039 COG3086 T Positive regulator of sigma E activity 3478414 3478890 - 65 cho3040 COG1145 C Ferredoxin 3478895 3479089 - 2Fe-2S ferredoxin 95 cho3041 3479136 3479420 - Flavodoxin 446 cho3042 COG0426 C Uncharacterized flavoproteins 3479439 3480776 - Predicted NADH-ubiquinone oxidoreductase; subunit RnfA 193 cho3043 COG4657 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 3481165 3481743 + Electron transport complex protein rnfB 187 cho3044 COG2878 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 3481767 3482327 + 4Fe-4S ferredoxin, RnfC 519 cho3045 COG4656 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 3482327 3483883 + RnfD protein 357 cho3046 COG4658 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 3483895 3484965 + Electron transport complex, RnfABCDGE type, G subunit 217 cho3047 COG4659 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 3484965 3485615 + NADH-ubiquinone oxidoreductase 243 cho3048 COG4660 C Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 3485630 3486358 + probable rnfH protein 85 cho3049 COG2914 S Uncharacterized protein conserved in bacteria 3486358 3486612 + hypothetical protein RSP_3199 340 cho3050 COG0446 R Uncharacterized NAD(FAD)-dependent dehydrogenases 3486651 3487670 + 92 cho3051 3487746 3488021 + choline sulfatase protein 504 cho3052 COG3119 P Arylsulfatase A and related enzymes 3488058 3489569 - hypothetical protein Atu4647 314 cho3053 COG2113 E ABC-type proline/glycine betaine transport systems, periplasmic components 3489588 3490529 - probable transcriptional regulator protein, LysR family 294 cho3055 3490633 3491514 + 188 cho3054 3491512 3492075 - putative transcriptional regulator 393 cho3056 COG0641 R Arylsulfatase regulator (Fe-S oxidoreductase) 3492175 3493353 - 1284 cho3057 3493442 3497293 - 139 cho3058 3497410 3497826 - succinyl-diaminopimelate desuccinylase 379 cho3059 3497826 3498962 - 205 cho3060 3499241 3499855 + hypothetical protein TM1040_2997 365 cho3061 3499869 3500963 + acyl-CoA dehydrogenase 547 cho3062 3501130 3502770 + hypothetical acetyltransferase YncA 167 cho3064 COG1247 M Sortase and related acyltransferases 3502818 3503318 + DNA repair protein RecO 240 cho3063 COG1381 L Recombinational DNA repair protein (RecF pathway) 3503315 3504034 - hypothetical protein RSP_1677 111 cho3065 3504120 3504452 - GTP-binding protein Era 303 cho3066 COG1159 R GTPase 3504458 3505366 - ribonuclease III 228 cho3067 COG0571 K dsRNA-specific ribonuclease 3505366 3506049 - Peptidase S26A, signal peptidase I 265 cho3068 COG0681 U Signal peptidase I 3506049 3506843 - holo-(acyl-carrier-protein) synthase 133 cho3069 COG0736 I Phosphopantetheinyl transferase (holo-ACP synthase) 3506899 3507297 - 148 cho3070 3507297 3507740 - pyridoxal phosphate biosynthetic protein PdxJ 247 cho3071 COG0854 H Pyridoxal phosphate biosynthesis protein 3507759 3508499 - hypothetical protein RSP_1671 206 cho3072 3508564 3509181 - RelA/SpoT family protein 705 cho3073 COG0317 TK Guanosine polyphosphate pyrophosphohydrolases/synthetases 3509254 3511368 - DNA-directed RNA polymerase, omega subunit 117 cho3074 COG1758 K DNA-directed RNA polymerase, subunit K/omega 3511391 3511741 - hypothetical protein RD1_1356 193 cho3075 COG1432 S Uncharacterized conserved protein 3512534 3513112 + ribosomal large subunit pseudouridine synthase A 318 cho3076 COG0564 J Pseudouridylate synthases, 23S RNA-specific 3513325 3514278 - Antisigma-factor antagonist (STAS) domain protein 115 cho3077 3514561 3514905 + 163 cho3079 3514898 3515386 + hypothetical protein RSP_1498 108 cho3078 COG3785 S Uncharacterized conserved protein 3515385 3515708 - hypothetical protein RSP_1496 191 cho3080 3515896 3516468 + Putative outer membrane lipoprotein carrier protein 203 cho3081 COG2834 M Outer membrane lipoprotein-sorting protein 3516482 3517090 - cell division protein FtsK 1044 cho3082 COG1674 D DNA segregation ATPase FtsK/SpoIIIE and related proteins 3517177 3520308 - amidase, putative 561 cho3083 3521620 3523302 - 70 cho3084 COG2835 S Uncharacterized conserved protein 3524238 3524447 - peptidase S16, lon-like 259 cho3085 COG2802 R Uncharacterized protein, similar to the N-terminal domain of Lon protease 3524447 3525223 - Thioredoxin domain 303 cho3086 3525112 3526020 - exodeoxyribonuclease III, putative 262 cho3087 COG0708 L Exonuclease III 3526091 3526876 - DNA-binding protein 478 cho3088 COG3800 R Predicted transcriptional regulator 3526967 3528400 - malate synthase 540 cho3089 COG2225 C Malate synthase 3528556 3530175 + isocitrate lyase 536 cho3090 COG2224 C Isocitrate lyase 3530302 3531909 + 195 cho3091 3532324 3532908 - anaerobic ribonucleoside triphosphate reductase 676 cho3092 COG1328 F Oxygen-sensitive ribonucleoside-triphosphate reductase 3533879 3535906 + 62 cho3093 3535927 3536112 + Ribonucleoside-triphosphate reductase, anaerobic-like 205 cho3094 3536108 3536722 + DNA-binding protein 460 cho3095 COG3800 R Predicted transcriptional regulator 3536741 3538120 - 127 cho3096 COG1607 I Acyl-CoA hydrolase 3538238 3538618 + citrate synthase 391 cho3098 COG0372 C Citrate synthase 3540165 3541337 + putative carboxyphosphonoenolpyruvate phosphonomutase 303 cho3099 COG2513 G PEP phosphonomutase and related enzymes 3541344 3542252 + Ferredoxin 349 cho3100 COG1018 C Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 3542269 3543315 - Rieske (2Fe-2S) region 411 cho3101 3543322 3544554 - methionine synthase 908 cho3102 COG1410 E Methionine synthase I, cobalamin-binding domain 3544870 3547593 - methionine synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase 345 cho3103 COG0646 E Methionine synthase I (cobalamin-dependent), methyltransferase domain 3547593 3548627 - Cobyric acid synthase CobQ 484 cho3104 COG1492 H Cobyric acid synthase 3548740 3550191 - cobyric acid synthase 582 cho3105 COG1492 H Cobyric acid synthase 3550191 3551936 - 393 cho3106 3552686 3553864 + Putative TonB dependent Vitamin B12 outer membrane receptor 616 cho3107 3554207 3556054 + ABC cobalamin/Fe3+-siderophore transporter, periplasmic substrate-binding subunit 285 cho3108 3556108 3556962 + Helix-turn-helix, AraC type:FecCD transport family:Sodium:dicarboxylate symporter:SecY protein 327 cho3109 COG0609 P ABC-type Fe3+-siderophore transport system, permease component 3556962 3557942 + ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit 244 cho3110 3557942 3558673 + 228 cho3111 3558673 3559356 + BioB, biotin synthase 315 cho3112 COG0502 H Biotin synthase and related enzymes 3559576 3560520 + 8-amino-7-oxononanoate synthase 377 cho3113 COG0156 H 7-keto-8-aminopelargonate synthetase and related enzymes 3560520 3561650 + dithiobiotin synthetase 205 cho3114 COG0132 H Dethiobiotin synthetase 3561650 3562264 + adenosylmethionine-8-amino-7-oxononanoate aminotransferase 423 cho3115 COG0161 H Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3562264 3563532 + 198 cho3116 3563535 3564128 + transcriptional regulator, GntR family 207 cho3118 3564899 3565519 + hypothetical transcriptional regulator 267 cho3119 3565703 3566503 + putative enoyl-acyl carrier protein reductase 319 cho3120 COG0623 I Enoyl-[acyl-carrier-protein] reductase (NADH) 3566427 3567383 + hypothetical protein RPE_3161 855 cho3121 3567397 3569961 + acetate kinase 394 cho3122 COG0282 C Acetate kinase 3569961 3571142 + phosphonoacetaldehyde phosphonohydrolase 263 cho3123 3571437 3572225 - 132 cho3124 3572420 3572815 + 81 cho3125 3573024 3573266 + Non-ribosomal peptide synthetase modules and related protein 1002 cho3126 3573492 3576497 + hypothetical protein SPO1168 164 cho3127 3582690 3583181 + SsrA-binding protein 198 cho3128 COG0691 O tmRNA-binding protein 3583141 3583734 + 3-mercaptopyruvate sulfurtransferase 285 cho3129 COG2897 P Rhodanese-related sulfurtransferase 3583803 3584657 + Aromatic amino acid transferase 394 cho3130 COG1448 E Aspartate/tyrosine/aromatic aminotransferase 3584657 3585838 + transcriptional regulator 152 cho3131 3585957 3586412 + efflux pump protein FarA 360 cho3132 COG1566 V Multidrug resistance efflux pump 3586405 3587484 + efflux pump protein FarB 519 cho3133 3587491 3589047 + ammonium transporter 453 cho3134 COG0004 P Ammonia permease 3589111 3590469 - nitrogen regulatory protein P-II (GlnB, GlnK) 112 cho3135 COG0347 E Nitrogen regulatory protein PII 3590496 3590831 - penicillin-binding protein, 1A family 756 cho3136 COG0744 M Membrane carboxypeptidase (penicillin-binding protein) 3591091 3593358 + toluene tolerance 212 cho3137 COG2854 Q ABC-type transport system involved in resistance to organic solvents, auxiliary component 3593415 3594050 - VacJ lipoprotein, putative 248 cho3138 COG2853 M Surface lipoprotein 3594010 3594753 - ABC protein toxin exporter, fused ATPase and inner membrane domain 578 cho3139 COG4618 R ABC-type protease/lipase transport system, ATPase and permease components 3594977 3596710 + Type I secretion membrane fusion protein, HlyD 488 cho3140 3596710 3598173 + lytic murein transglycosylase, putative 388 cho3141 COG2951 M Membrane-bound lytic murein transglycosylase B 3598180 3599343 - 116 cho3142 3599522 3599869 + methionyl-tRNA formyltransferase, putative 297 cho3143 COG0223 J Methionyl-tRNA formyltransferase 3599879 3600769 - Formylmethionine deformylase 169 cho3144 COG0242 J N-formylmethionyl-tRNA deformylase 3600772 3601278 - Formylmethionine deformylase 178 cho3145 COG0242 J N-formylmethionyl-tRNA deformylase 3601282 3601815 - putative aminotransferase 459 cho3146 COG1168 E Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 3601793 3603169 + 78 cho3147 COG2261 S Predicted membrane protein 3603254 3603487 + 51 cho3148 3603491 3603643 + Band 7 protein 294 cho3149 COG0330 O Membrane protease subunits, stomatin/prohibitin homologs 3603707 3604588 + 90 cho3150 COG1585 OU Membrane protein implicated in regulation of membrane protease activity 3604594 3604863 + orotidine 5,-phosphate decarboxylase 236 cho3151 COG0284 F Orotidine-5'-phosphate decarboxylase 3605189 3605896 - 67 cho3152 3605968 3606168 - ATP-dependent Clp protease, ATP-binding subunit ClpB 886 cho3153 3606328 3608985 + DNA polymerase IV, putative 550 cho3154 COG0389 L Nucleotidyltransferase/DNA polymerase involved in DNA repair 3608769 3610418 + N-formylglutamate amidohydrolase, putative 286 cho3155 COG3741 E N-formylglutamate amidohydrolase 3610425 3611282 - 41 cho3156 COG0257 J Ribosomal protein L36 3611578 3611700 + Hydrolase, haloacid dehalogenase-like hydrolase 216 cho3157 COG0637 R Predicted phosphatase/phosphohexomutase 3611780 3612427 - N-6 Adenine-specific DNA methylase 187 cho3158 COG0742 L N6-adenine-specific methylase 3612427 3612987 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 399 cho3159 3612987 3614183 - Redoxin 162 cho3160 COG0678 O Peroxiredoxin 3614260 3614745 + hypothetical protein SPO3732 409 cho3161 COG3146 S Uncharacterized protein conserved in bacteria 3614897 3616123 - glycerophosphoryl diester phosphodiesterase, putative 251 cho3162 COG0584 C Glycerophosphoryl diester phosphodiesterase 3616116 3616868 - hypothetical protein RSP_0894 153 cho3163 3616871 3617329 - 152 cho3164 3617342 3617797 - 118 cho3166 COG1380 R Putative effector of murein hydrolase LrgA 3621496 3621849 + LrgB-like protein 238 cho3167 COG1346 M Putative effector of murein hydrolase 3621845 3622558 + ribonuclease H 153 cho3168 COG0328 L Ribonuclease HI 3622795 3623253 - putative RhtB family transporter 200 cho3169 3623256 3623855 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 315 cho3170 COG0761 IM Penicillin tolerance protein 3623865 3624809 - two component transcriptional regulator, winged helix family 237 cho3171 3624878 3625588 - PAS sensor hybrid histidine kinase 641 cho3172 3625588 3627510 - Long chain acyl-CoA synthetase 720 cho3173 COG1022 I Long-chain acyl-CoA synthetases (AMP-forming) 3627676 3629835 + ABC transporter related 272 cho3174 COG0411 E ABC-type branched-chain amino acid transport systems, ATPase component 3629835 3630650 + ABC branched amino acid transporter family, inner membrane subunit 328 cho3175 COG0559 E Branched-chain amino acid ABC-type transport system, permease components 3630646 3631629 + 61 cho3176 3631796 3631978 + ABC branched amino acid transporter family, inner membrane subunit 358 cho3177 COG4177 E ABC-type branched-chain amino acid transport system, permease component 3632031 3633104 + branched-chain amino acid ABC transporter, ATP-binding protein 273 cho3179 COG0410 E ABC-type branched-chain amino acid transport systems, ATPase component 3634509 3635327 + phenylacetate-CoA ligase, putative 406 cho3180 COG1541 H Coenzyme F390 synthetase 3635411 3636628 + Methionine aminopeptidase, subfamily 1 269 cho3181 COG0024 J Methionine aminopeptidase 3636728 3637534 - molybdopterin binding domain 242 cho3182 COG1058 R Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA 3637647 3638372 + OmpA domain protein 311 cho3184 3639082 3640014 + transcriptional regulator, LysR family, putative 301 cho3185 3640060 3640962 - 2,4-dienoyl-CoA reductase 670 cho3186 3641244 3643253 + 114 cho3187 3643315 3643656 - hypothetical protein TM1040_2680 257 cho3188 3643669 3644439 - 209 cho3189 3644611 3645237 - ATPase, BadF/BadG/BcrA/BcrD type 274 cho3190 COG2971 G Predicted N-acetylglucosamine kinase 3645372 3646193 + N-acetylglucosamine-6-phosphate deacetylase 381 cho3192 COG1820 G N-acetylglucosamine-6-phosphate deacetylase 3646184 3647326 + phosphoserine phosphatase SerB 290 cho3191 COG0560 E Phosphoserine phosphatase 3647308 3648177 - phosphoserine aminotransferase 381 cho3193 COG1932 HE Phosphoserine aminotransferase 3648333 3649475 + D-3-phosphoglycerate dehydrogenase 531 cho3194 COG0111 HE Phosphoglycerate dehydrogenase and related dehydrogenases 3649550 3651142 + hypothetical protein RSP_1353 243 cho3195 COG0639 T Diadenosine tetraphosphatase and related serine/threonine protein phosphatases 3651209 3651937 + Acetyl-CoA C-acetyltransferase 391 cho3196 COG0183 I Acetyl-CoA acetyltransferase 3652198 3653370 + penicillin-binding protein 1C 684 cho3197 COG4953 M Membrane carboxypeptidase/penicillin-binding protein PbpC 3653446 3655497 - sensor histidine kinase/response regulator 743 cho3199 3661077 3663305 + ATP-dependent DNA helicase RecQ 687 cho3200 COG0514 L Superfamily II DNA helicase 3663312 3665372 - 95 cho3201 COG0762 S Predicted integral membrane protein 3665380 3665664 - hypothetical protein TM1040_2661 179 cho3202 3665816 3666352 + major facilitator superfamily MFS_1 446 cho3203 3666410 3667747 + hypothetical protein RSP_1364 375 cho3204 3668437 3669561 + hypothetical protein RSP_1365 206 cho3205 COG1738 S Uncharacterized conserved protein 3669661 3670278 + 80 cho3206 COG1722 L Exonuclease VII small subunit 3670638 3670877 + farnesyl diphosphate synthase 288 cho3207 COG0142 H Geranylgeranyl pyrophosphate synthase 3670880 3671743 + 1-deoxy-D-xylulose-5-phosphate synthase 636 cho3208 COG1154 HI Deoxyxylulose-5-phosphate synthase 3671757 3673664 + Predicted ornithine cyclodeaminase 305 cho3209 COG2423 E Predicted ornithine cyclodeaminase, mu-crystallin homolog 3673773 3674687 - hydrolase, putative 205 cho3210 COG1011 R Predicted hydrolase (HAD superfamily) 3674687 3675301 - Auxin Efflux Carrier 305 cho3211 COG0679 R Predicted permeases 3675301 3676215 - hypothetical protein SPO3842 325 cho3212 3676321 3677295 - probable pyrazinamidase/nicotinamidase 201 cho3213 3677709 3678311 + nicotinate phosphoribosyltransferase 435 cho3215 COG1488 H Nicotinic acid phosphoribosyltransferase 3678316 3679620 + Phosphate transporter, Pit family 490 cho3214 COG0306 P Phosphate/sulphate permeases 3679623 3681092 - NUDIX hydrolase 148 cho3216 3681193 3681636 - aminotransferase, class III 420 cho3218 COG0160 E 4-aminobutyrate aminotransferase and related aminotransferases 3682607 3683866 - hypothetical protein RSP_1366 140 cho3219 COG1186 J Protein chain release factor B 3683862 3684281 - MiaB-like Radical SAM protein 419 cho3220 COG0621 J 2-methylthioadenine synthetase 3684376 3685632 - Diaminopimelate epimerase 277 cho3221 COG0253 E Diaminopimelate epimerase 3685632 3686462 - methionine sulfoxide reductase A 165 cho3223 COG0225 O Peptide methionine sulfoxide reductase 3687188 3687682 + flagellar biosynthetic protein FliP 240 cho3222 COG1338 NU Flagellar biosynthesis pathway, component FliP 3687679 3688398 - hypothetical protein RSP_1310 90 cho3224 COG1886 NU Flagellar motor switch/type III secretory pathway protein 3688403 3688672 - putative flagellar biosynthesis/type III secretory pathway protein 201 cho3225 3688668 3689270 - flagellar M-ring protein FliF 566 cho3226 COG1766 NU Flagellar biosynthesis/type III secretory pathway lipoprotein 3689270 3690967 - possible flagellar synthesis protein 164 cho3227 3691046 3691537 + 131 cho3228 3691551 3691943 + hypothetical protein RD1_0272 206 cho3229 3691943 3692560 + flagellar motor protein 289 cho3230 COG1291 N Flagellar motor component 3692626 3693492 + hypothetical protein SPO0204 749 cho3231 3693492 3695738 + putative hemin transport protein 299 cho3232 3695869 3696765 + oxygen-independent coproporphyrinogen III oxidase, putative 385 cho3233 COG0635 H Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 3696775 3697929 - hypothetical protein SMc03796 126 cho3234 3697929 3698306 - Ham1 protein-like protein 203 cho3235 COG0127 F Xanthosine triphosphate pyrophosphatase 3698306 3698914 - ribonuclease PH 237 cho3236 COG0689 J RNase PH 3698914 3699624 - heat-inducible transcription repressor HrcA, putative 358 cho3237 COG1420 K Transcriptional regulator of heat shock gene 3699721 3700794 + putative chaperone protein GrpE (heat shock protein) 182 cho3238 COG0576 O Molecular chaperone GrpE (heat shock protein) 3700802 3701347 + DNA mismatch repair protein MutS, putative 1217 cho3239 COG0249 L Mismatch repair ATPase (MutS family) 3701402 3705052 - ribokinase, putative 292 cho3240 3706472 3707347 + two component transcriptional regulator, winged helix family 230 cho3241 3707354 3708043 - phosphate transport system regulatory protein PhoU 236 cho3242 COG0704 P Phosphate uptake regulator 3708050 3708757 - ABC phosphate transporter, ATPase subunit PstB 265 cho3243 COG1117 P ABC-type phosphate transport system, ATPase component 3708772 3709566 - ABC phosphate transporter, inner membrane subunit PstA 443 cho3244 COG0581 P ABC-type phosphate transport system, permease component 3709573 3710901 - ABC phosphate transporter, inner membrane subunit PstC 486 cho3245 COG0573 P ABC-type phosphate transport system, permease component 3710901 3712358 - ABC phosphate transporter, periplasmic phosphate-binding protein 351 cho3246 COG0226 P ABC-type phosphate transport system, periplasmic component 3712417 3713469 - 118 cho3247 3713581 3713934 - hypothetical protein RSP_1512 139 cho3248 COG2947 S Uncharacterized conserved protein 3714533 3714949 - hypothetical protein RSP_1511 89 cho3249 COG2350 S Uncharacterized protein conserved in bacteria 3714952 3715218 - Glycerol-3-phosphate dehydrogenase (NAD(P)+) 318 cho3250 COG0240 C Glycerol-3-phosphate dehydrogenase 3715222 3716175 - metalloendopeptidase, putative, glycoprotease family 378 cho3251 COG0533 O Metal-dependent proteases with possible chaperone activity 3716175 3717308 - 385 cho3252 3718118 3719272 + Uncharacterized HemY-like membrane protein 480 cho3253 3719286 3720725 + hypothetical protein SPO0174 184 cho3254 3720934 3721485 - flagellar L-ring protein precursor 241 cho3255 COG2063 N Flagellar basal body L-ring protein 3721496 3722218 - 141 cho3256 COG1261 NO Flagellar basal body P-ring biosynthesis protein 3722233 3722655 - flagellar basal-body rod protein FlgG 261 cho3257 COG4786 N Flagellar basal body rod protein 3722658 3723440 - flagellar basal body rod protein 237 cho3258 3723456 3724166 - 88 cho3259 COG1987 NU Flagellar biosynthesis pathway, component FliQ 3724173 3724436 - 98 cho3260 COG1677 NU Flagellar hook-basal body protein 3724441 3724734 - putative flagellar basal-body rod protein FlgC 131 cho3261 COG1558 N Flagellar basal body rod protein 3724760 3725152 - flagellar basal-body rod protein; FlgB 128 cho3262 COG1815 N Flagellar basal body protein 3725158 3725541 - H+-transporting two-sector ATPase, alpha/beta subunit 440 cho3263 COG1157 NU Flagellar biosynthesis/type III secretory pathway ATPase 3725635 3726954 + flagellar protein, putative 275 cho3264 3726980 3727804 - flagellar FlbT 134 cho3265 3727804 3728205 - flagellar protein FlaF, putative 125 cho3266 3728205 3728579 - flagellin-like 398 cho3267 COG1344 N Flagellin and related hook-associated proteins 3728668 3729861 - 114 cho3268 3730074 3730415 - 98 cho3269 3730408 3730701 - 936 cho3270 3730812 3733619 + Possible FlgD protein 225 cho3271 COG1843 N Flagellar hook capping protein 3733634 3734308 + ubiquinone biosynthesis protein UbiB 507 cho3272 COG0661 R Predicted unusual protein kinase 3734315 3735835 - formamidopyrimidine-DNA glycosylase 281 cho3273 COG0266 L Formamidopyrimidine-DNA glycosylase 3736665 3737507 + Enoyl-CoA hydratase/isomerase 258 cho3274 3737592 3738365 + ribosomal protein S20 88 cho3275 COG0268 J Ribosomal protein S20 3738518 3738781 +
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