zdrojove database vazebnych motivu

ELM - The Eukaryotic Linear Motif

 

phospho.ELM

 

PepCyber

P~Pep is a database of human protein-protein interactions mediated by phosphoprotein binding domains (PPBDs).

NetPhos

The NetPhos 2.0 server produces neural network predictions for serine, threonine and tyrosine phosphorylation sites in eukaryotic proteins.

Scansite

Searches for phosphorylation sites and motifs that bind to domains such as SH2, 14-3-3 or PDZ .

iSPOT

Prediction of interaction with protein domains (SH3, PDZ, WW...)

DILIMOT

DILIMOT is a server for finding short (3-8 amino acids), over-represented peptide patterns, or Linear motifs, in a set of proteins.

SLiMFinder - Short linear motifs

Explore interaction data for linear motif candidates

Human Proteinpedia - HPRD

Human Proteinpedia is a community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations. Human Protein Reference Database (HPRD) integrates data, that is deposited in Human Proteinpedia along with the existing literature curated information in the context of an individual protein. All the public data contributed to Human Proteinpedia can be queried, viewed and downloaded.

Pdf k Proteinpedii

Mathivanan_BMCBioinf_human_protein_protein_interaction_dB_HPRD.pdf

Pdf k Proteinpedii

Mathivanan_NB_human_proteinpedia_protein_interaction_dB_HPRD.pdf

phosphomotif HPRD database

Amanchy_NB_HPRD_phosphomotif_database_integration.pdf

FT MOTIF in swissprot

list of all motifs (line FT MOTIF) on human subset of swissprot