Preliminary results (XI 07)
Searches of patterns against different databases
sp6c5: structural patterns (6 aa, gaps 1-5) against astral_40
select hits, count(*) from sp6c5 group by hits order by hits desc limit 10; +------+----------+ | hits | count(*) | +------+----------+ | 3 | 3 | | 2 | 227 | | 1 | 86100 | | 0 | 57513670 | +------+----------+
sp6c6: structural patterns (6 aa, gaps 1-5) against astral_70
select hits, count(*) from sp6c6 group by hits order by hits desc; +------+----------+ | hits | count(*) | +------+----------+ | 6 | 3 | | 5 | 3 | | 4 | 22 | | 3 | 267 | | 2 | 2365 | | 1 | 98616 | | 0 | 57498724 | +------+----------+
sp5i5: interaction patterns (5 aa, gaps 0-7) against astral_40
select hits, count(*) from sp5i5 group by hits order by hits desc; +------+----------+ | hits | count(*) | +------+----------+ | 11 | 1 | | 10 | 1 | | 9 | 4 | | 8 | 29 | | 7 | 207 | | 6 | 1423 | | 5 | 10013 | | 4 | 68757 | | 3 | 423246 | | 2 | 2278920 | | 1 | 10332754 | | 0 | 36036645 | +------+----------+
sp5i6: interaction patterns (5 aa, gaps 0-7) against astral_70
select hits, count(*) from sp5i6 group by hits order by hits desc; +------+----------+ | hits | count(*) | +------+----------+ | 34 | 1 | | 25 | 1 | | 21 | 1 | | 20 | 1 | | 19 | 1 | | 18 | 2 | | 17 | 2 | | 16 | 6 | | 15 | 15 | | 14 | 18 | | 13 | 27 | | 12 | 36 | | 11 | 60 | | 10 | 124 | | 9 | 235 | | 8 | 626 | | 7 | 1993 | | 6 | 8334 | | 5 | 38535 | | 4 | 180856 | | 3 | 805623 | | 2 | 3262543 | | 1 | 11515354 | | 0 | 33337606 | +------+----------+
neighborhood of the pattern with hi number of hits in astral_70
+----------+----+----+----+----+----+----+----+----+----+------+------+ | pid | a1 | g1 | a2 | g2 | a3 | g3 | a4 | g4 | a5 | hits | mark | +----------+----+----+----+----+----+----+----+----+----+------+------+ | 11280945 | Q | 1 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 16917041 | N | 1 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 20046385 | W | 1 | E | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 20881969 | W | 1 | K | 0 | Q | 6 | E | 0 | W | 15 | 99 | | 21717553 | W | 1 | D | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22544945 | W | 1 | R | 0 | Q | 6 | E | 0 | Q | 0 | 99 | | 22549041 | W | 1 | R | 0 | Q | 6 | E | 0 | N | 0 | 99 | | 22552625 | W | 0 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22553089 | W | 1 | R | 0 | Q | 0 | E | 0 | W | 0 | 99 | | 22553097 | W | 1 | R | 0 | Q | 1 | E | 0 | W | 0 | 99 | | 22553105 | W | 1 | R | 0 | Q | 2 | E | 0 | W | 0 | 99 | | 22553113 | W | 1 | R | 0 | Q | 3 | E | 0 | W | 0 | 99 | | 22553121 | W | 1 | R | 0 | Q | 4 | E | 0 | W | 0 | 99 | | 22553129 | W | 1 | R | 0 | Q | 5 | E | 0 | W | 0 | 99 | | 22553137 | W | 1 | R | 0 | Q | 6 | E | 0 | W | 34 | 99 | | 22553138 | W | 1 | R | 0 | Q | 6 | E | 1 | W | 0 | 99 | | 22553139 | W | 1 | R | 0 | Q | 6 | E | 2 | W | 0 | 99 | | 22553140 | W | 1 | R | 0 | Q | 6 | E | 3 | W | 4 | 99 | | 22553141 | W | 1 | R | 0 | Q | 6 | E | 4 | W | 0 | 99 | | 22553142 | W | 1 | R | 0 | Q | 6 | E | 5 | W | 4 | 99 | | 22553143 | W | 1 | R | 0 | Q | 6 | E | 6 | W | 3 | 99 | | 22553144 | W | 1 | R | 0 | Q | 6 | E | 7 | W | 0 | 99 | | 22553145 | W | 1 | R | 0 | Q | 7 | E | 0 | W | 0 | 99 | | 22553201 | W | 1 | R | 1 | Q | 6 | E | 0 | W | 0 | 99 | | 22553265 | W | 1 | R | 2 | Q | 6 | E | 0 | W | 1 | 99 | | 22553329 | W | 1 | R | 3 | Q | 6 | E | 0 | W | 0 | 99 | | 22553393 | W | 1 | R | 4 | Q | 6 | E | 0 | W | 0 | 99 | | 22553457 | W | 1 | R | 5 | Q | 6 | E | 0 | W | 0 | 99 | | 22553521 | W | 1 | R | 6 | Q | 6 | E | 0 | W | 1 | 99 | | 22553585 | W | 1 | R | 7 | Q | 6 | E | 0 | W | 0 | 99 | | 22553649 | W | 2 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22554161 | W | 3 | R | 0 | Q | 6 | E | 0 | W | 4 | 99 | | 22554673 | W | 4 | R | 0 | Q | 6 | E | 0 | W | 6 | 99 | | 22555185 | W | 5 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22555697 | W | 6 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22556209 | W | 7 | R | 0 | Q | 6 | E | 0 | W | 0 | 99 | | 22565425 | W | 1 | R | 0 | Q | 6 | K | 0 | W | 0 | 99 | | 22577713 | W | 1 | R | 0 | Q | 6 | D | 0 | W | 0 | 99 | | 22590001 | W | 1 | R | 0 | Q | 6 | R | 0 | W | 0 | 99 | | 22651441 | W | 1 | R | 0 | N | 6 | E | 0 | W | 1 | 99 | | 22749745 | W | 1 | R | 0 | W | 6 | E | 0 | W | 0 | 99 | +----------+----+----+----+----+----+----+----+----+----+------+------+