Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

Hana Šimková, PhD.

Position:

research project leader

Phone:

+420 585 238 715

Fax:

+420 585 238 704

E-mail:

simkovah

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31 783 71 Olomouc - Holice

Room number:

206

Education

M.Sc., University of Agriculture, Brno (1989), Phytotechnics
Ph.D., Academy of Sciences of the Czech Republic, Prague (1997), Genetics

Professional Experience

1997 – 2000 Postdoctoral Fellow, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2001 – present Scientist, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2006 – present Lecturer, Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc

Recent Research Activities

Development of procedure for preparation of high-molecular-weight DNA from flow-sorted chromosomes
Optimization of procedure and construction of chromosome-specific BAC libraries
Development of procedure for multiple-displacement amplification of flow-sorted chromosomes
Use of flow-sorted chromosomes for physical mapping
Map-based cloning of the Russian wheat aphid resistance gene

All User Publications:

Number of publications: 50

2013

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat

Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Šimková, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Doležel, J., Gill, B.S.
PLANT PHYSIOLOGY 161, 252–265, 2013 Fulltext: PDF link on intranet only
Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Shatalina, M., Wicker, T., Buchmann, J.P., Oberhaensli, S., Šimková, H., Doležel, J., Keller, B.
PLANT BIOTECHNOLOGY JOURNAL 11, 23-32, 2013 Fulltext: PDF link on intranet only

2012

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

Hernandez, P., Martis, M., Dorado, G., Pfeifer, M., Gálvez, S., Schaaf, S., Jouve, N., Šimková, H., Valárik, M., Doležel, J., Mayer, K.F.X.
PLANT JOURNAL 69, 377–386, 2012 Fulltext: PDF link on intranet only
Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1

Fluch, S., Kopecky, D., Burg, K., Šimková, H., Taudien, S., Petzold, A., Kubaláková, M., Platzer, M., Berenyi, M., Krainer, S., Doležel, J., Lelley, T.
PLoS ONE 7(2), e30784, 2012 Fulltext: PDF link on intranet only
Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation

Berkman, P.J., Skarshewski, A., Manoli, S., Lorenc, M.T., Stiller, J., Smits, L., Lai, K., Campbell, E., Kubaláková, M., Šimková, H., Batley, J., Doležel, J., Hernandez, P., Edwards, D.
THEORETICAL AND APPLIED GENETICS 124, 423–432, 2012 Fulltext: PDF link on intranet only
Functional features of a single chromosome arm in wheat (1AL) determined from its structure

Lucas, S.J., Šimková, H., Šafář, J., Jurman, I., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12, 173–182, 2012 Fulltext: PDF link on intranet only
Fine mapping, phenotypic characterization and validation of non-race-specific resistance to powdery mildew in a wheat–Triticum militinae introgression line.

Jakobson, I., Reis, D., Tiidema, A., Peusha, H., Timofejeva, L., Valárik, M., Kladivová, M., Šimková, H., Doležel, J., Järve, K.
THEORETICAL AND APPLIED GENETICS 125, 609-623, 2012 Fulltext: PDF link on intranet only
Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat

Sehgal, S.K., Li, W., Rabinowicz, P.D., Chan, A., Šimková, H., Doležel, J., Gill, B.S.
BMC PLANT BIOLOGY 12, 64, 2012 Fulltext: PDF link on intranet only
Chromosomes in the flow to simplify genome analysis

Doležel, J., Vrána, J., Šafář, J., Bartoš, J., Kubaláková, M., Šimková, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12, 397-416, 2012 Fulltext: PDF link on intranet only
Flow cytometric chromosome sorting in plants: The next generation

Vrána, J., Šimková, H., Kubaláková, M., Číhalíková, J., Doležel, J.
METHODS 57, 331-337, 2012 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, PhD.

2013

2012

Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, PhD.

2013

2012

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR