Institute of Experimental Botany AS CR
We are Discovering the Plant World

2013

• Molecular analysis and genomic organization of major DNA satellites in banana (Musa spp.)
  Čížková, J., Hřibová, E., Humplíková, L., Christelová, P., Suchánková, P., Doležel, J.
  PLoS ONE 8 e54808 2013 Fulltext: PDF link on intranet only
• Plant Genome Diversity, Volume 2.
  Leitch, I.J., Greilhuber, J., Doležel, J., Wendel, J.F. (eds.)
  Plant Genome Diversity Volume 2 2013
• Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat
  Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Šimková, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Doležel, J., Gill, B.S.
  PLANT PHYSIOLOGY 161 252–265 2013 Fulltext: PDF link on intranet only
• Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno
  Shatalina, M., Wicker, T., Buchmann, J.P., Oberhaensli, S., Šimková, H., Doležel, J., Keller, B.
  PLANT BIOTECHNOLOGY JOURNAL 11 23-32 2013 Fulltext: PDF link on intranet only
• Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
  Varshney, R.K., Song, C., Saxena, R.K., Azam, S., Yu, S., Sharpe, A.G., Cannon, S., Baek, J., Rosen, B.D., Tar’an, B., Millan, T., Zhang, X., Ramsay, L.D., Iwata, A., Wang, Y., Nelson, W., Farmer, A.D., Gaur, P.M., Soderlund, C., Penmetsa, R.V., Xu, C., Bharti, A.K., He, W., Winter, P., Zhao, S., Hane, J.K., Carrasquilla-Garcia, N., Condie, J.A., Upadhyaya, H.D., Luo, M.-C., Thudi, M., Gowda, C.L.L., Singh, N.P., Lichtenzveig, J., Gali, K.K., Rubio, J., Nadarajan, N., Doležel, J., Bansal, K.C., Xu, X., Edwards, D., Zhang, G., Kahl, G., Gil, J., Singh, K.B., Datta, S.K., Jackson, S.A., Wang, J., Cook, D.R.
  NATURE BIOTECHNOLOGY 31 240-246 2013 Fulltext: PDF link on intranet only
• Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.
  Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
  PLoS ONE 8 e59542 2013 Fulltext: PDF link on intranet only
• A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus
  Michalak de Jimenez, M.K., Bassi, F.M., Ghavami, F., Simons, K., Dizon, R., Seetan, R.I., Alnemer, L.M., Denton, A.M., Doğramacı, M., Šimková, H., Doležel, J., Seth, K., Luo, M.-C., Dvorak, J., Gu, Y.Q., Kianian, S.F.
  FUNCTIONAL & INTEGRATIVE GENOMICS 13 19-32 2013 Fulltext: PDF link on intranet only
• Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.)
  Terracciano, I., Maccaferri, M., Bassi, F., Mantovani, P., Sanguineti, M.C., Salvi, S., Šimková, H., Doležel, J., Massi, A., Ammar, K., Kolmer, J., Tuberosa, R.
  THEORETICAL AND APPLIED GENETICS 126 1077-1101 2013 Fulltext: PDF link on intranet only
• A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
  Luo, M.-C., Gu, Y.Q., You, F.M., Deal, K.R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C.M., Zhang, Y., McGuire, P.E., Pasternak, S., Stein, J.C., Ware, D., Kramer, M., McCombie, W.R., Kianian, S.F., Martis, M.M., Mayer, K.F.X., Sehgal, S.K., Li, W., Gill, B.S., Bevan, M.W., Šimková, H., Doležel, J., Weining, S., Lazo, G.R., Anderson, O.D., Dvorak, J.
  PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 7940-7945 2013 Fulltext: PDF link on intranet only
• Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
  Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
  BMC GENOMICS 14 222 2013 Fulltext: PDF link on intranet only