Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

2012

• Genetic diversity of turf-type tall fescue using diversity arrays technology
  Baird, J. H., Kopecký, D., Lukaszewski, A.J., Green, R.L., Bartoš, J., Doležel, J.
  CROP SCIENCE 52, 408-412, 2012 Fulltext: PDF link on intranet only
• Genomic diversity in two related plant species with and without sex chromosomes - Silene latifolia and S. vulgaris
  Cegan, R., Vyskot, B., Kejnovsky, E., Kubat, Z., Blavet, H., Šafář, J., Doležel, J., Blavet, N., Hobza, R.
  PLoS ONE 7(2), e31898, 2012 Fulltext: PDF link on intranet only
• Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content
  Hernandez, P., Martis, M., Dorado, G., Pfeifer, M., Gálvez, S., Schaaf, S., Jouve, N., Šimková, H., Valárik, M., Doležel, J., Mayer, K.F.X.
  PLANT JOURNAL 69, 377–386, 2012 Fulltext: PDF link on intranet only
• Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1
  Fluch, S., Kopecky, D., Burg, K., Šimková, H., Taudien, S., Petzold, A., Kubaláková, M., Platzer, M., Berenyi, M., Krainer, S., Doležel, J., Lelley, T.
  PLoS ONE 7(2), e30784, 2012 Fulltext: PDF link on intranet only
• Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation
  Berkman, P.J., Skarshewski, A., Manoli, S., Lorenc, M.T., Stiller, J., Smits, L., Lai, K., Campbell, E., Kubaláková, M., Šimková, H., Batley, J., Doležel, J., Hernandez, P., Edwards, D.
  THEORETICAL AND APPLIED GENETICS 124, 423–432, 2012 Fulltext: PDF link on intranet only
• Inversions of chromosome arms 4AL and 2BS in wheat invert the patterns of chiasma distribution
  Lukaszewski, A.J., Kopecký, D., Linc, G.
  CHROMOSOMA 121, 201-208, 2012 Fulltext: PDF link on intranet only
• Functional features of a single chromosome arm in wheat (1AL) determined from its structure
  Lucas, S.J., Šimková, H., Šafář, J., Jurman, I., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
  FUNCTIONAL & INTEGRATIVE GENOMICS 12, 173–182, 2012 Fulltext: PDF link on intranet only
• Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers
  Tomaszewski, C., Byrne, S.L., Foito, A., Kildea, S., Kopecký, D., Doležel, J., Heslop-Harrison, J.S., Stewart, D., Barth, S.
  PLANT BREEDING 131, 345-349, 2012 Fulltext: PDF link on intranet only
• Plant genome diversity Volume 1
  Wendel, J.F., Greilhuber, J., Doležel, J., Leitch, I.J. (eds.)
• Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes
  Tomaštíková E., Cenklová V., Kohoutová L., Petrovská B., Váchová L., Halada P., Kočárová G., Binarová P.
  BMC PLANT BIOLOGY 12, 83, 2012 Fulltext: PDF link on intranet only
• Fine mapping, phenotypic characterization and validation of non-race-specific resistance to powdery mildew in a wheat–Triticum militinae introgression line.
  Jakobson, I., Reis, D., Tiidema, A., Peusha, H., Timofejeva, L., Valárik, M., Kladivová, M., Šimková, H., Doležel, J., Järve, K.
  THEORETICAL AND APPLIED GENETICS 125, 609-623, 2012 Fulltext: PDF link on intranet only
• The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
  D’Hont, A., Denoeud, F., Aury, J.-M., Baurens, F.-C., Carreel, F., Garsmeur, O., Noel, B., Bocs, S., Droc, G., Rouard, M., Da Silva, C., Jabbari, K., Cardi1, C., Poulain, J., Souquet, M., Labadie, K., Jourda, C., Lengelle´, J., Rodier-Goud, M., Alberti, A., Bernard, M., Correa, M., Ayyampalayam, S., Mckain, M.R., Leebens-Mack, J., Burgess, D., Freeling, M., Mbéguié-A-Mbéguié, D., Chabannes, M., Wicker, T., Panaud, O., Barbosa, J., Hřibová, E., Heslop-Harrison, P., Habas, R., Rivallan, R., Francois, P., Poiron, C., Kilian, A., Burthia, D., Jenny, C., Bakry, F., Brown, S., Guignon, V., Kema, G., Dita, M., Waalwijk, C., Joseph, S., Dievart, A., Jaillon, O., Leclercq, J., Argout, X., Lyons, E., Almeida, A., Jeridi, M., Doležel, J., Roux, N., Risterucci, A.-M., Weissenbach, J., Ruiz, M., Glaszmann, J.-C., Quétier, F., Yahiaoui, N., Wincker, P.
  NATURE 488, 213-217, 2012 Fulltext: PDF link on intranet only
• Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
  Sehgal, S.K., Li, W., Rabinowicz, P.D., Chan, A., Šimková, H., Doležel, J., Gill, B.S.
  BMC PLANT BIOLOGY 12, 64, 2012 Fulltext: PDF link on intranet only
• Chromosomes in the flow to simplify genome analysis
  Doležel, J., Vrána, J., Šafář, J., Bartoš, J., Kubaláková, M., Šimková, H.
  FUNCTIONAL & INTEGRATIVE GENOMICS 12, 397-416, 2012 Fulltext: PDF link on intranet only
• Flow cytometric chromosome sorting in plants: The next generation
  Vrána, J., Šimková, H., Kubaláková, M., Číhalíková, J., Doležel, J.
  METHODS 57, 331-337, 2012 Fulltext: PDF link on intranet only
• Subgenomic analysis of microRNAs in polyploid wheat
  Kantar, M., Akpınar, B.A., Valárik, M., Lucas, S.J., Doležel, J., Hernández, P., Budak, H.
  FUNCTIONAL & INTEGRATIVE GENOMICS 12, 465-479, 2012 Fulltext: PDF link on intranet only
• Development of chromosome-arm-specific microsatellite markers in Triticum aestivum (Poaceae) using NGS technology
  Nie, X., Li, B., Wang, L., Liu, P., Biradar, S.S., Li, T., Doležel, J., Edwards, D., Luo, M., Weining, S.
  AMERICAN JOURNAL OF BOTANY , e369–e371, 2012 Fulltext: PDF link on intranet only
• Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences
  Martis, M.M., Klemme, S., Banaei-Moghaddam, A.M., Blattner, F.R., Macas, J., Schmutzer, T., Scholz, U., Gundlach, H., Wicker, T., Šimková, H., Novák, P., Neumann, P., Kubaláková, M., Bauer, E., Haseneyer, G., Fuchs, J., Doležel, J., Stein, N., Mayer, K.F.X., Houben, A.
  PROCEEDINGS OF THE NAS OF THE USA 109, 33, 2012 Fulltext: PDF link on intranet only
• Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat
  Bartoš, J., Vlček, Č., Choulet, F., Džunková, M., Cviková, K., Šafář, J., Šimková, H., Pačes, J., Strnad, H., Sourdille, P., Bergés, H., Cattonaro, F., Feuillet, C., Doležel, J.
  BMC PLANT BIOLOGY 12, 155, 2012 Fulltext: PDF link on intranet only
• Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome
  Blavet, N., Blavet, H., Čegan, R., Zemp, N., Zdanska, J., Janoušek, B., Hobza, R., Widmer, A.
  BMC GENOMICS 13, 226, 2012 Fulltext: PDF link on intranet only