Hana Šípová, MSc.

Education:

2006 - 2008: Master Study at Charles University in Prague, Faculty of Mathematics and Physics, Division of Biomolecular Physics.
Thesis: Study of biomolecular interactions by the method of surface plasmon resonance

2003 - 2006: Bachelor study at Charles University in Prague, Faculty of Mathematics and Physics, Division of Biomolecular Physics.
Thesis: Study of biomolecules using SERS spectroscopy on solid metal nanosubstrates

Publications:

Book chapters:

1. P. Adam, M. Piliarik, H. Šípová, T. Špringer, M. Vala, J. Homola: Surface Plasmons for Biodetection, in Photonic Sensing: Principles and Applications for Safety and Security Monitoring, editors W. J. Bock, J., X. Gaozhi, John Wiley & Sons, 2012, 1-58.

Journal papers:

1. H. Šípová, T. Špringer, D. Rejman, O. Šimák, M. Petrová, P. Novák, Š. Rosenbergová, O. Páv, R. Liboska, I. Barvík, J. Štěpánek, I. Rosenberg, J. Homola: 5’-O-Methylphosphonate nucleic acids (MEPNA) – new modified DNAs that increase the E. coli RNase H cleavage rate of hybrid duplexes, Nucleic Acids Research, 42, 5378–5389 (2014). link
2. B. Špačková, P. Lebrušková, H. Šípová, P. Kwiecien, I. Richter, J. Homola : Ambiguous Refractive Index Sensitivity of Fano Resonance on an Array of Gold Nanoparticles. Plasmonics (2013):
   1-7.
3. M. Kuchař, L. Vaňková, H. Petroková, J. Černý, R. Osička, O. Pelák, H. Šípová, B. Schneider, J. Homola, P. Šebo, T. Kalina, P. Malý: Human interleukin-23 receptor antagonists derived from an albumin-binding domain scaffold inhibit IL-23-dependent ex vivo expansion of IL-17-producing T-cells, PROTEINS: Structure, Function, and Bioinformatics, 82, 975–989 (2014).
4. Y. H. Jang,   K. Chung,   L. N. Quan,   B. Špačková,   H. Šípová,   S. Moon,   W. J. Cho,   H.-Y. Shin,   Y. J. Jang,   J.-E. Lee,   S. T. Kochuveedu,   M. J. Yoon,   J. Kim,   S. Yoon,   J. K. Kim,   D. Kim,   J. Homola, D. H. Kim: Configuration-controlled Au Nanocluster Arrays with Unique Plasmonic Coupling Property on Reconstructed Inverse Micelle Nano-patterns: Versatile Platforms for SERS and Advanced Kretschmann-type SPR Sensors, Nanoscale (2013),  5(24), 12261-12271
5. H. Aouani,
   M. Rahmani, H. Šípová, V. Torres, K. Hegnerová, M. Beruete, J. Homola, M. Hong, M. Navarro-Cía, S. A. Maier: Plasmonic Nanoantennas for Multispectral Surface-Enhanced Spectroscopies, Journal of Physical Chemistry C (2013), 117 (36), 18620–18626
6. H. Šípová, J. Homola: Surface plasmon resonance sensing of nucleic acids: A review, Analytica Chimica Acta (2013) 773: 9-23.
7. N. S. Lynn Jr., H. Šípová, P. Adam, J. Homola: Enhancement of Affinity-Based Biosensors: Effect of Sensing Chamber Geometry on Sensitivity, Lab on Chip (2013) 13(7): p. 1413-21
8. H. Aouani, H. Šípová, M. Rahmani, M. Navarro-Cia, K. Hegnerová, J. Homola, M. Hong, S. A. Maier: Ultra-Sensitive Broadband Probing of Molecular Vibrational Modes with Multifrequency Optical Antennas, ACS Nano (2013) 7(1): 669-675.
9. H. Šípová, V. Ševců, M. Kuchař, J.N. Ahmad, P. Mikulecký, R. Osička, P. Malý, J. Homola: Surface plasmon resonance biosensor based on engineered proteins for direct detection of interferon-gamma in diluted blood plasma, Sensors and Actuators B 174 (2012) 306– 311
10. H. Šípová, D. Vrba, J. Homola: Analytical value of detecting an individual molecular binding event: the case of the SPR biosensor, Analytical Chemistry, 84 (2012): 30-3.
11. M. Piliarik, H. Šípová, P. Kvasnička, N. Galler, J. R. Krenn, J. Homola: High-resolution biosensor based on localized surface plasmons, Optics Express, (2012) 20: 672-80.
12. J. N. Ahmad, J. Li, L. Biedermannová, M. Kuchař, H. Šípová, A. Semerádtová, J. Černý, H. Petroková, P. Mikulecký, J. Polínek, O. Staněk, J. Vondrášek, J. Homola, J. Malý, R. Osička, P. Šebo, P. Malý: Novel high-affinity binders of human interferon gamma derived from albumin-binding domain of protein G. Proteins, 80 (2012): 774-89
13. H. Šípová, T. Špringer,  J. Homola: Streptavidin-enhanced assay for sensitive and specific detection of single nucleotide polymorphism in TP53. Analytical and Bioanalytical Chemistry (2011), 399, 2343-2350.
14. H. Šípová, S. Zhang, A.M. Dudley , D. Galas, K. Wang, J. Homola: Surface Plasmon Resonance Biosensor for Rapid Label-Free Detection of Microribonucleic Acid at Subfemtomole Level. Analytical Chemistry (2010), 82: 10110-10115.
15. T. Špringer, H. Šípová, H. Vaisocherová, J. Štěpánek, J. Homola: Shielding effect of monovalent and divalent cations on solid-phase DNA hybridization: surface plasmon resonance biosensor study. Nucleic Acids Research 38 (2010): 7343-7351
16. H. Šípová,
    H. Vaisocherová, J. Štěpánek, J. Homola: A Dual surface plasmon resonance assay for determination of Ribonuclease H activity, Biosensors and Bioelectronics 26 (2010): 1605-1611
17. H. Vaisocherová, J. Snášel, T. Špringer, H. Šípová, I. Rosenberg, J. Štěpánek, J. Homola: Surface plasmon resonance study on HIV-1 integrase strand transfer activity, Analytical and Bioanalytical Chemistry, 393, 1165-1172 (2009).

Conference papers:

1. L. Ferrari, L, H. Šípová, I. Tichý, K. Chadt, J. Homola: Electrochemical surface plasmon resonance biosensor for study of DNA desorption and hybridization. Proceedings of SPIE - the international society for optical engineering (2013).
2. H. Šípová, P. Adam, N. S. Lynn, J. Homola: Improving sensitivity of flow-through affinity biosensors by optimizing the microfluidics. 11th European Conference on Optical Chemical Sensors and Biosensors - EUROPT(R)ODE XI, Barcelona, Spain, April 1^st-4^th, 2012
3. H. Šípová, V. Ševců, M. Kuchař, J.N. Ahmad, P. Mikulecký, P. Šebo, P. Malý, J. Homola: Sensitive detection of interferon-gamma with engineered proteins and surface plasmon resonance biosensor, Procedia Engineering, 25(2011)
4. H. Šípová, M Piliarik, M Vala, K Chadt, P Adam, M Bocková, K. Hegnerová, J. Homola: Portable surface plasmon resonance biosensor for detection of nucleic acids, Procedia Engineering, 25(2011).
5. Šípová H., Vaisocherová H., Štěpánek J., Homola J.: Surface plasmon resonance assay for quantitative determination of ribonuclease H activity. 20th Anniversary World Congress on Biosensors - Biosensors 2010, Glasgow, UK, May 26-28, 2010.
6. Šípová H., Zhang S., Galas D., Wang K., Homola J.: Portable surface plasmon resonance biosensor to detect micrornas.10th European Conference on Optical Chemical Sensors and Biosensors - EUROPT(R)ODE X, Prague, Czech Republic, March 28-31, 2010. March 28-31, 2010 Book of Abstracts
7. Šípová H., Špringer T., Homola J.: Streptavidin-enhanced sandwich assay for specific detection of single nucleotide polymorphism.10th European Conference on Optical Chemical Sensors and Biosensors - EUROPT(R)ODE X, Prague, Czech Republic, March 28-31, 2010.
8. Vala, M., Šipová, H., Špringer, T., Chadt, K., Piliarik, M., Homola, J., Compact multi-channel surface plasmon resonance sensor for rapid detection of bacterial pathogens, 10th European Conference on Optical Chemical Sensors and Biosensors, EUROPT(R)ODE X,
   Prague, Czech Republic, March 28-31, 2010, Book of Abstracts 214