Institute of Biophysics of the ASCR, v. v. i.

ASEP Publications

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Records found: 51

0431577 - BFU-R 2015 RIV GB eng J - Journal Article
Adam, M. - Gajdová, Silvie - Kolářová, Hana - Kubala, Lukáš - Lau, D. - Geisler, A.
Red blood cells serve as intravascular carriers of myeloperoxidase.
Journal of Molecular and Cellular Cardiology. Roč. 74, - (2014), s. 353-363. ISSN 0022-2828
R&D Projects: GA ČR(CZ) GCP305/12/J038
Institutional Support: RVO:68081707
Keywords: Myeloperoxidase * Erythrocyte * Cell membranes
Subject RIV: BO - Biophysics
Impact factor: 5.218, year: 2013
Permanent link: http://hdl.handle.net/11104/0236222

0428805 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Balintová, Jana - Daďová, Jitka - Kielkowski, Pavel - Ménová, Petra - Vaníková, Zuzana - Riedl, Jan - Raindlová, Veronika - Fojta, Miroslav - Hocek, Michal
Polymerase synthesis of base-modified DNA: New methods and new applications.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 66-67 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GA203/09/0317; GA ČR GBP206/12/G151
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: nucleic acids * base-modified DNA * dNTPs
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Permanent link: http://hdl.handle.net/11104/0234074

0428933 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Balintová, Jana - Brázdová, Marie - Havran, Luděk - Fojta, Miroslav - Hocek, Michal
Redox labeling and redox coding of nucleic acids.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 229-230 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GBP206/12/G151; GA AV ČR(CZ) IAA400040901
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: nucleic acids * DNA * dNTPs
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Permanent link: http://hdl.handle.net/11104/0234283

0427971 - BFU-R 2015 RIV NL eng J - Journal Article
Bartošík, Martin - Hrstka, R. - Paleček, Emil - Vojtešek, B.
Magnetic bead-based hybridization assay for electrochemical detection of microRNA.
Analytica Chimica Acta. Roč. 813, FEB2014 (2014), s. 35-40. ISSN 0003-2670
R&D Projects: GA ČR(CZ) GBP206/12/G151; GA ČR(CZ) GA13-00956S
Institutional Support: RVO:68081707
Keywords: MicroRNA * Electrochemistry * Mercury electrodes
Subject RIV: BO - Biophysics
Impact factor: 4.517, year: 2013
Permanent link: http://hdl.handle.net/11104/0233411

0427938 - BFU-R 2015 RIV GB eng J - Journal Article
Borkovcová, P. - Pekárová, B. - Válková, M. - Dopitová, R. - Brzobohatý, Břetislav - Janda, L. - Hejatko, J.
Antibodies against CKI1(RD), a receiver domain of the sensor histidine kinase in Arabidopsis thaliana: From antigen preparation to in planta immunolocalization.
Phytochemistry. Roč. 100, APR 2014 (2014), s. 6-15. ISSN 0031-9422
R&D Projects: GA MŠk(CZ) ED1.1.00/02.0068
Not R&D Projects: GA ČR(CZ) GAP501/11/1150; GA ČR(CZ) GA13-25280S
Institutional Support: RVO:68081707
Keywords: Receiver domain * Polyclonal antibodies * Immunoprecipitation
Subject RIV: BO - Biophysics
Impact factor: 3.350, year: 2013
Permanent link: http://hdl.handle.net/11104/0233387

0429108 - UFCH-W 2015 RIV GB eng J - Journal Article
Civiš, Svatopluk - Ferus, Martin - Šponer, Judit E. - Kavan, Ladislav - Zukalová, Markéta
Room temperature spontaneous conversion of OCS to CO2 on the anatase TiO2 surface.
Chemical Communications. Roč. 50, č. 57 (2014), s. 7712-7715. ISSN 1359-7345
R&D Projects: GA MŠk LD14115; GA MŠk(CZ) LD13060
Not R&D Projects: COST(XE) CM1104
Institutional Support: RVO:61388955 ; RVO:68081707
Keywords: TiO2 * FT-IR spectroscopy * OCS
Subject RIV: CG - Electrochemistry
Impact factor: 6.718, year: 2013
Permanent link: http://hdl.handle.net/11104/0234275

0428937 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Daďová, Jitka - Orság, Petr - Pohl, Radek - Brázdová, Marie - Fojta, Miroslav - Hocek, Michal
Study of DNA-protein interactions by cross-link formation using aqueous Michael addition.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 240-241 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GA203/09/0317; GA ČR(CZ) GAP301/11/2076
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: nucleic acids * DNA * Michael addition
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Permanent link: http://hdl.handle.net/11104/0234284

0427939 - BFU-R 2015 RIV US eng J - Journal Article
de Groot, E.A. - Ganji, R.S. - Bernatík, Ondřej
Huwe1-Mediated Ubiquitylation of Dishevelled Defines a Negative Feedback Loop in the Wnt Signaling Pathway.
Science Signaling. Roč. 7, č. 317 (2014). ISSN 1937-9145
R&D Projects: GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: CAENORHABDITIS-ELEGANS * BETA-CATENIN * PROTEIN ASSEMBLIES
Subject RIV: BO - Biophysics
Impact factor: 7.648, year: 2012
Permanent link: http://hdl.handle.net/11104/0233361

0429769 - BFU-R 2015 RIV NL eng J - Journal Article
Denev, P. - Kratchanova, M. - Číž, Milan - Lojek, Antonín - Vašíček, Ondřej - Nedelcheva, P. - Blazheva, D. - Toshkova, R. - Gardeva, E. - Yossifova, L. - Hyršl, P. - Vojtek, L.
Biological activities of selected polyphenol-rich fruits related to immunity and gastrointestinal health.
Food Chemistry. Roč. 157, AUG2014 (2014), s. 37-44. ISSN 0308-8146
Institutional Support: RVO:68081707
Keywords: Small fruits * Polyphenols * Antioxidant activity
Subject RIV: BO - Biophysics
Impact factor: 3.259, year: 2013
Permanent link: http://hdl.handle.net/11104/0234825

0431753 - BFU-R 2015 RIV US eng J - Journal Article
Dib, K. - Perečko, Tomáš - Jenei, V.
The histamine H-4 receptor is a potent inhibitor of adhesion-dependent degranulation in human neutrophils.
Journal of Leukocyte Biology. Roč. 96, č. 3 (2014), s. 411-418. ISSN 0741-5400
R&D Projects: GA MŠk(CZ) EE2.3.30.0030
Institutional Support: RVO:68081707
Keywords: inflammation * signaling * innate immunity
Subject RIV: BO - Biophysics
Impact factor: 4.304, year: 2013
Permanent link: http://hdl.handle.net/11104/0236327

0430484 - UOCHB-X 2015 RIV GB eng J - Journal Article
Dršata, Tomáš - Špačková, Naďa - Jurečka, P. - Zgarbová, M. - Šponer, Jiří - Lankaš, Filip
Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.
Nucleic Acids Research. Roč. 42, č. 11 (2014), s. 7383-7394. ISSN 0305-1048
R&D Projects: GA ČR(CZ) GA14-21893S
Not R&D Projects: GA MŠk(CZ) ED2.1.00/03.0058; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: molecular dynamics simulations * sequence-directed curvature * adenine-thymine tract
Subject RIV: BO - Biophysics
Impact factor: 8.808, year: 2013
http://nar.oxfordjournals.org/content/42/11/7383
Permanent link: http://hdl.handle.net/11104/0235562

0424731 - BFU-R 2014 RIV GB eng J - Journal Article
Falk, Martin - Lukášová, Emilie - Štefančíková, Lenka - Baranová, E. - Falková, Iva - Ježková, L. - Davídková, Marie - Bačíková, Alena - Vachelová, Jana - Michaelidesová, Anna - Kozubek, Stanislav
Heterochromatinization associated with cell differentiation as a model to study DNA double strand break induction and repair in the context of higher-order chromatin structure.
Applied Radiation and Isotopes. Roč. 83, Jan (2014), s. 177-185. ISSN 0969-8043
R&D Projects: GA MŠk(CZ) LD12039
Institutional Support: RVO:68081707 ; RVO:61389005
Keywords: DNA double strand break (DSB) repair * Immature and terminally differentiated granulocytes * gamma H2AX/53BP1 repair foci
Subject RIV: BO - Biophysics; BO - Biophysics
Impact factor: 1.056, year: 2013
Permanent link: http://hdl.handle.net/11104/0230757

0426059 - UFCH-W 2015 RIV US eng J - Journal Article
Ferus, Martin - Michalčíková, Regina - Shestivska, Violetta - Šponer, Jiří - Šponer, Judit E. - Civiš, Svatopluk
High-Energy Chemistry of Formamide: A Simpler Way for Nucleobase Formation.
Journal of Physical Chemistry A. Roč. 118, č. 4 (2014), s. 719-736. ISSN 1089-5639
R&D Projects: GA ČR GAP208/10/2302; GA MŠk LM2010014
Institutional Support: RVO:61388955 ; RVO:68081707
Keywords: HIGH-POWER LASER * TRANSFORM EMISSION-SPECTROSCOPY * INDUCED DIELECTRIC-BREAKDOWN
Subject RIV: CF - Physical & Theoretical Chemistry
Impact factor: 2.775, year: 2013
Permanent link: http://hdl.handle.net/11104/0231811

0428049 - BFU-R 2015 RIV US eng J - Journal Article
Ferus, Martin - Michalčíková, Regina - Shestivska, Violetta - Šponer, Jiří - Šponer, Judit E. - Civiš, Martin
High-Energy Chemistry of Formamide: A Simpler Way for Nucleobase Formation.
Journal of Physical Chemistry A. Roč. 118, č. 4 (2014), s. 719-736. ISSN 1089-5639
R&D Projects: GA ČR(CZ) GAP208/10/2302; GA MŠk(CZ) LM2010014; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: CEZ:AV0Z5004920
Institutional Support: RVO:68081707 ; RVO:61388955
Keywords: HIGH-POWER LASER * INDUCED DIELECTRIC-BREAKDOWN * TRANSFORM EMISSION-SPECTROSCOPY
Subject RIV: BO - Biophysics; CF - Physical & Theoretical Chemistry
Impact factor: 2.775, year: 2013
Permanent link: http://hdl.handle.net/11104/0233470

0429318 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Fojta, Miroslav - Daňhel, Aleš - Horáková, Petra - Plucnara, Medard - Pivoňková, Hana - Havran, Luděk - Vidláková, Pavlína - Raindlová, Veronika - Balintová, Jana - Macíčková-Cahová, Hana - Hocek, Michal
Electrochemical analysis of DNA using switchable redox moieties.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 264-266 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GBP206/12/G151
Not R&D Projects: OPVK(CZ) CZ.1.07/2.3.00/30.0019
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: DNA * electrochemical analysis * switchable redox moieties
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Permanent link: http://hdl.handle.net/11104/0234537

0428114 - BFU-R 2015 RIV GB eng J - Journal Article
Fulneček, Jaroslav - Kovařík, Aleš
How to interpret Methylation Sensitive Amplified Polymorphism (MSAP) profiles?.
B M C Genetics. Roč. 15, JAN 2014 (2014). ISSN 1471-2156
R&D Projects: GA ČR(CZ) GBP501/12/G090; GA ČR(CZ) GA13-10057S; GA ČR(CZ) GA206/09/1751
Institutional Support: RVO:68081707
Keywords: MSAP * DNA methylation * Methylcytosine
Subject RIV: BO - Biophysics
Impact factor: 2.356, year: 2013
Permanent link: http://hdl.handle.net/11104/0233526

0427956 - BFU-R 2015 RIV US eng J - Journal Article
Gkionis, K. - Kruse, H. - Platts, J. A. - Mládek, Arnošt - Koča, J. - Šponer, Jiří
Ion Binding to Quadruplex DNA Stems. Comparison of MM and QM Descriptions Reveals Sizable Polarization Effects Not Included in Contemporary Simulations.
Journal of Chemical Theory and Computation. Roč. 10, č. 3 (2014), s. 1326-1340. ISSN 1549-9618
R&D Projects: GA ČR(CZ) GAP208/11/1822; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: MOLECULAR-DYNAMICS SIMULATIONS * GAUSSIAN-BASIS SETS * TETRAMOLECULAR G-QUADRUPLEXES
Subject RIV: BO - Biophysics
Impact factor: 5.310, year: 2013
Permanent link: http://hdl.handle.net/11104/0233394

0427968 - BFU-R 2015 RIV DE eng J - Journal Article
Hofer, Michal - Pospíšil, Milan - Dušek, L. - Hoferová, Zuzana - Komůrková, Denisa
Agonist of the adenosine A(3) receptor, IB-MECA, and inhibitor of cyclooxygenase-2, meloxicam, given alone or in a combination early after total body irradiation enhance survival of gamma-irradiated mice.
Radiation and Environmental Biophysics. Roč. 53, č. 1 (2014), s. 211-215. ISSN 0301-634X
R&D Projects: GA ČR(CZ) GA305/08/0158; GA ČR(CZ) GAP303/11/0128
Institutional Support: RVO:68081707
Keywords: Ionizing radiation * Acute radiation disease * Survival
Subject RIV: BO - Biophysics
Impact factor: 1.582, year: 2013
Permanent link: http://hdl.handle.net/11104/0233408

0427937 - BFU-R 2015 RIV PL J - Journal Article
Hofer, Michal - Pospíšil, Milan - Dušek, L. - Hoferová, Zuzana - Komůrková, Denisa
Combined pharmacological therapy of the acute radiation disease using a cyclooxygenase-2 inhibitor and an adenosine A(3) receptor agonist.
Central European Journal of Biology. Roč. 9, č. 6 (2014), s. 642-646. ISSN 1895-104X
R&D Projects: GA ČR(CZ) GAP303/11/0128
Institutional Support: RVO:68081707
Keywords: Hematopoiesis * Cyclooxygenase inhibition * Adenosine receptor agonist
Subject RIV: BO - Biophysics
Impact factor: 0.633, year: 2013
Permanent link: http://hdl.handle.net/11104/0233386

0424749 - BFU-R 2014 RIV GB eng J - Journal Article
Ježková, L. - Falk, Martin - Falková, Iva - Davídková, Marie - Bačíková, Alena - Štefančíková, Lenka - Vachelová, Jana - Michaelidesová, Anna - Lukášová, Emilie - Boreyko, A. - Krasavin, E. - Kozubek, Stanislav
Function of chromatin structure and dynamics in DNA damage, repair and misrepair: gamma-rays and protons in action.
Applied Radiation and Isotopes. Roč. 83, SI (2014), s. 128-136. ISSN 0969-8043
R&D Projects: GA MŠk(CZ) EE2.3.30.0030; GA ČR(CZ) GBP302/12/G157; GA ČR(CZ) GAP302/10/1022; GA ČR(CZ) GBP108/12/G108; GA MŠk(CZ) LD12039; GA MŠk(CZ) LD12008
Institutional Support: RVO:68081707 ; RVO:61389005
Keywords: DNA double-strand breaks * Higher-order chromatin structure and DSB repair * Formation of chromosomal translocations
Subject RIV: BO - Biophysics; BO - Biophysics
Impact factor: 1.056, year: 2013
Permanent link: http://hdl.handle.net/11104/0230775

0428653 - BFU-R 2015 RIV US eng J - Journal Article
Kilander, M.B.C. - Petersen, J. - Andressen, K.W. - Ganji, R.S. - Levy, F. O. - Schuster, J. - Dahl, N. - Bryja, Vítězslav - Schulte, G.
Disheveled regulates precoupling of heterotrimeric G proteins to Frizzled 6.
FASEB Journal. Roč. 28, č. 5 (2014), s. 2293-2305. ISSN 0892-6638
R&D Projects: GA ČR(CZ) GD204/09/H058; GA ČR(CZ) GA204/09/0498; GA ČR(CZ) GA13-32990S
Institutional Support: RVO:68081707
Keywords: COUPLED-RECEPTOR ACTIVATION * F9 TERATOCARCINOMA CELLS * C-TERMINAL REGION
Subject RIV: BO - Biophysics
Impact factor: 5.480, year: 2013
Permanent link: http://hdl.handle.net/11104/0233966

0431017 - BFU-R 2015 RIV US eng J - Journal Article
Klinke, A. - Moeller, A. - Pekarová, Michaela - Ravekes, T. - Friedrichs, K. - Berlin, M. - Scheu, K.M. - Kubala, Lukáš - Kolářová, Hana - Ambrožová, Gabriela - Schermuly, R.T. - Woodcock, S.R. - Freeman, B.A. - Rosenkranz, S. - Baldus, S. - Rudolph, V. - Rudolph, T.K.
Protective Effects of 10-nitro-oleic Acid in a Hypoxia-Induced Murine Model of Pulmonary Hypertension.
American Journal of Respiratory Cell and Molecular Biology. Roč. 51, č. 1 (2014), s. 155-162. ISSN 1044-1549
R&D Projects: GA MŠk(CZ) ED1.100/02/0123; GA ČR(CZ) GP13-40824P
Institutional Support: RVO:68081707
Keywords: NITRO-FATTY ACIDS * MUSCLE-CELL PROLIFERATION * ARTERIAL-HYPERTENSION
Subject RIV: BO - Biophysics
Impact factor: 4.109, year: 2013
Permanent link: http://hdl.handle.net/11104/0235680

0431777 - BFU-R 2015 RIV US eng J - Journal Article
Kruse, H. - Havrila, Marek - Šponer, Jiří
QM Computations on Complete Nucleic Acids Building Blocks: Analysis of the Sarcin-Ricin RNA Motif Using DFT-D3, HF-3c, PM6-D3H, and MM Approaches.
Journal of Chemical Theory and Computation. Roč. 10, č. 6 (2014), s. 2615-2629. ISSN 1549-9618
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: DENSITY-FUNCTIONAL THEORY * MOLECULAR-DYNAMICS SIMULATIONS * QUANTUM-CHEMICAL COMPUTATIONS
Subject RIV: BO - Biophysics
Impact factor: 5.310, year: 2013
Permanent link: http://hdl.handle.net/11104/0236355

0427976 - BFU-R 2015 RIV US eng J - Journal Article
Kříž, Vitězslav - Pospíchalová, V. - Mašek, Jan - Kilander, M.B.C. - Slavík, J. - Tanneberger, K. - Schulte, G. - Machala, M. - Kozubík, Alois - Behrens, J. - Bryja, Vítězslav
beta-Arrestin Promotes Wnt-induced Low Density Lipoprotein Receptor-related Protein 6 (Lrp6) Phosphorylation via Increased Membrane Recruitment of Amer1 Protein.
Journal of Biological Chemistry. Roč. 289, č. 2 (2014), s. 1128-1141. ISSN 0021-9258
R&D Projects: GA ČR(CZ) GA204/09/0498; GA ČR(CZ) GA13-32990S
Not R&D Projects: GA ČR(CZ) GC204/09/J030
Institutional Support: RVO:68081707 ; RVO:68378050
Keywords: CONVERGENT EXTENSION MOVEMENTS * SIGNALING PATHWAYS * IN-VIVO
Subject RIV: BO - Biophysics; EB - Genetics & Molecular Biology
Impact factor: 4.600, year: 2013
Permanent link: http://hdl.handle.net/11104/0233415

0428657 - BFU-R 2015 RIV NL eng J - Journal Article
Kuceková, Z. - Humpolíček, P. - Kašpárková, V. - Perečko, Tomáš - Lehocký, M. - Hauerlandova, I. - Saha, P. - Stejskal, Jaroslav
Colloidal polyaniline dispersions: Antibacterial activity, cytotoxicity and neutrophil oxidative burst.
Colloids and Surfaces B-Biointerfaces. Roč. 116, APR 2014 (2014), s. 411-417. ISSN 0927-7765
R&D Projects: GA ČR(CZ) GA13-08944S; GA MŠk(CZ) EE2.3.30.0030
Institutional Support: RVO:68081707
Keywords: Cytotoxicity * Apoptosis * Necrosis
Subject RIV: BO - Biophysics; CD - Macromolecular Chemistry
Impact factor: 4.287, year: 2013
Permanent link: http://hdl.handle.net/11104/0233967

0428669 - BFU-R 2015 RIV US eng J - Journal Article
Kuehrova, P. - Otyepka, Michal - Šponer, Jiří - Banáš, Pavel
Are Waters around RNA More than Just a Solvent? - An Insight from Molecular Dynamics Simulations.
Journal of Chemical Theory and Computation. Roč. 10, č. 1 (2014), s. 401-411. ISSN 1549-9618
R&D Projects: GA ČR(CZ) GAP208/12/1878; GA ČR(CZ) GPP301/11/P558; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: AMBER FORCE-FIELD * LIQUID WATER * NUCLEIC-ACIDS
Subject RIV: BO - Biophysics
Impact factor: 5.310, year: 2013
Permanent link: http://hdl.handle.net/11104/0233988

0428044 - BFU-R 2015 RIV CA eng J - Journal Article
Legartová, Soňa - Kozubek, Stanislav - Franěk, Michal - Zdráhal, Z. - Lochmanová, G. - Martinet, N. - Bártová, Eva
Cell differentiation along multiple pathways accompanied by changes in histone acetylation status.
Biochemistry and Cell Biology. Roč. 92, č. 2 (2014), s. 85-93. ISSN 0829-8211
R&D Projects: GA ČR(CZ) GAP302/10/1022; GA ČR(CZ) GBP302/12/G157; GA ČR(CZ) GA13-07822S; GA MŠk(CZ) LD11020; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: histones * acetylation * epigenetics
Subject RIV: BO - Biophysics
Impact factor: 2.350, year: 2013
Permanent link: http://hdl.handle.net/11104/0233480

0427969 - BFU-R 2015 RIV US eng J - Journal Article
Legartová, Soňa - Stixová, Lenka - Laur, O. - Kozubek, Stanislav - Sehnalová, Petra - Bártová, Eva
Nuclear Structures Surrounding Internal Lamin Invaginations.
Journal of Cellular Biochemistry. Roč. 115, č. 3 (2014), s. 476-487. ISSN 0730-2312
R&D Projects: GA MŠk(CZ) LD11020
Institutional Support: RVO:68081707
Keywords: LAMINS * NUCLEAR PORES * CHROMATIN
Subject RIV: BO - Biophysics
Impact factor: 3.368, year: 2013
Permanent link: http://hdl.handle.net/11104/0233409

0427974 - BFU-R 2015 RIV US eng J - Journal Article
Malina, Jaroslav - Farrell, N. P. - Brabec, Viktor
DNA Condensing Effects and Sequence Selectivity of DNA Binding of Antitumor Noncovalent Polynuclear Platinum Complexes.
Inorganic Chemistry. Roč. 53, č. 3 (2014), s. 1662-1671. ISSN 0020-1669
R&D Projects: GA ČR(CZ) GA13-08273S; GA MŠk(CZ) LH13096
Institutional Support: RVO:68081707
Keywords: INTERSTRAND CROSS-LINKS * LASER-LIGHT SCATTERING * CALF THYMUS DNA
Subject RIV: BO - Biophysics
Impact factor: 4.794, year: 2013
Permanent link: http://hdl.handle.net/11104/0233407

0428338 - BFU-R 2015 RIV GB eng J - Journal Article
Mangelings, D. - Vander Heyden, Y. - Vespalec, Radim
Chiral separability of boron cluster species studied by screening approaches utilizing polysaccharide-based chiral stationary phases.
Biomedical Chromatography. Roč. 28, č. 5 (2014), s. 694-707. ISSN 0269-3879
Institutional Support: RVO:68081707
Keywords: SUPERCRITICAL-FLUID CHROMATOGRAPHY * ORGANIC-SOLVENT CHROMATOGRAPHY * LIQUID-CHROMATOGRAPHY
Subject RIV: BO - Biophysics
Impact factor: 1.662, year: 2013
Permanent link: http://hdl.handle.net/11104/0233697

0428665 - BFU-R 2015 US eng J - Journal Article
Mlýnský, V. - Banáš, P. - Šponer, Jiří - van der Kamp, M.W. - Mulholland, A.J. - Otyepka, M.
Comparison of ab Initio, DFT, and Semiempirical QM/MM Approaches for Description of Catalytic Mechanism of Hairpin Ribozyme.
Journal of Chemical Theory and Computation. Roč. 10, č. 4 (2014), s. 1608-1622. ISSN 1549-9618
R&D Projects: GA ČR(CZ) GAP208/12/1878; GA ČR(CZ) GBP301/11/P558; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: MOLECULAR-DYNAMICS SIMULATIONS * DELTA-VIRUS RIBOZYME * ACID-BASE CATALYSIS
Subject RIV: BO - Biophysics
Impact factor: 5.310, year: 2013
Permanent link: http://hdl.handle.net/11104/0233987

0428115 - BFU-R 2015 RIV GB eng J - Journal Article
Novohradský, Vojtěch - Liu, Z. - Vojtíšková, Marie - Sadler, P. J. - Brabec, V. - Kašpárková, Jana
Mechanism of cellular accumulation of an iridium(III) pentamethylcyclopentadienyl anticancer complex containing a C,N-chelating ligand.
Metallomics. Roč. 6, č. 3 (2014), s. 682-690. ISSN 1756-5901
Institutional Support: RVO:68081707
Keywords: HUMAN OVARIAN-CANCER * DRUG-RESISTANCE * P-GLYCOPROTEIN
Subject RIV: BO - Biophysics
Impact factor: 3.978, year: 2013
Permanent link: http://hdl.handle.net/11104/0233687

0427822 - UOCHB-X 2015 RIV GB eng J - Journal Article
Ogrocká, A. - Polanská, P. - Majerová, E. - Janeba, Zlatko - Fajkus, Jiří - Fojtová, M.
Compromised telomere maintenance in hypomethylated Arabidopsis thaliana plants.
Nucleic Acids Research. Roč. 42, č. 5 (2014), s. 2919-2931. ISSN 0305-1048
Not R&D Projects: GA ČR(CZ) GAP501/11/0596; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: DNA methylation * cytosine methylation * mammalian telomeres
Subject RIV: CE - Biochemistry; BO - Biophysics
Impact factor: 8.808, year: 2013
Permanent link: http://hdl.handle.net/11104/0233368

0429324 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Orság, Petr - Pivoňková, Hana - Riedl, Jan - Hocek, Michal - Fojta, Miroslav
Utilisation of enzymatic labelling with 4-aminophtalimide and 4-hydroxybenzylideneimidazolinone fluorescent derivates for monitoring of DNA-protein interaction.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 340-341 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GBP206/12/G151; GA ČR(CZ) GAP301/11/2076
Not R&D Projects: MŠMT(CZ) CZ.1.07/2.3.00/30.0019
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: DNA-protein interaction * API * HBI
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Orság, Petr
Permanent link: http://hdl.handle.net/11104/0234541

0431759 - BFU-R 2015 RIV NL eng J - Journal Article
Paleček, Emil - Římánková, Ludmila
Chitosan catalyzes hydrogen evolution at mercury electrodes.
Electrochemistry Communications. Roč. 44, JUL2014 (2014), s. 59-62. ISSN 1388-2481
R&D Projects: GA ČR(CZ) GAP301/11/2055
Institutional Support: RVO:68081707
Keywords: Chitosan * Glucosamine-containing polymers * Catalytic hydrogen evolution
Subject RIV: BO - Biophysics
Impact factor: 4.287, year: 2013
Permanent link: http://hdl.handle.net/11104/0236330

0431776 - BFU-R 2015 RIV US eng J - Journal Article
Panecka, J. - Havrila, Marek - Réblová, K. - Šponer, Jiří - Trylska, J.
Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study.
Journal of Physical Chemistry B. Roč. 118, č. 24 (2014), s. 6687-6701. ISSN 1520-6106
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional Support: RVO:68081707
Keywords: NUCLEIC-ACIDS * DECODING SITE * CRYSTAL-STRUCTURE
Subject RIV: BO - Biophysics
Impact factor: 3.377, year: 2013
Permanent link: http://hdl.handle.net/11104/0236344

0427970 - BFU-R 2015 RIV GB eng J - Journal Article
Plšíková, J. - Štěpánková, Jana - Kašpárková, Jana - Brabec, Viktor - Bačkor, M. - Kozurková, M.
Lichen secondary metabolites as DNA-interacting agents.
Toxicology in Vitro. Roč. 28, č. 2 (2014), s. 182-186. ISSN 0887-2333
Institutional Support: RVO:68081707
Keywords: Lichens * DNA-binding * Topoisomerase I, II
Subject RIV: BO - Biophysics
Impact factor: 3.207, year: 2013
Permanent link: http://hdl.handle.net/11104/0233410

0427973 - BFU-R 2015 RIV US eng J - Journal Article
Polanská, Eva - Pospíšilová, Š. - Štros, Michal
Binding of Histone H1 to DNA Is Differentially Modulated by Redox State of HMGB1.
PLoS ONE. Roč. 9, č. 2 (2014). ISSN 1932-6203
R&D Projects: GA ČR(CZ) GAP305/12/2475; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: CHROMOSOMAL-PROTEIN HMG1 * MOBILITY GROUP-1 PROTEIN * LINKER HISTONES
Subject RIV: BO - Biophysics
Impact factor: 3.534, year: 2013
Permanent link: http://hdl.handle.net/11104/0233413

0428649 - BFU-R 2015 RIV US eng J - Journal Article
Sehnalová, Petra - Legartová, Soňa - Cmarko, D. - Kozubek, Stanislav - Bártová, Eva
Recruitment of HP1 beta to UVA-induced DNA lesions is independent of radiation-induced changes in A-type lamins.
Biology of the Cell. Roč. 106, č. 5 (2014), s. 151-165. ISSN 0248-4900
R&D Projects: GA ČR(CZ) GAP302/10/1022; GA ČR(CZ) GBP302/12/G157; GA ČR(CZ) GA13-07822S
Institutional Support: RVO:68081707
Keywords: Chromatin * DNA damage * HP1
Subject RIV: BO - Biophysics
Impact factor: 3.872, year: 2013
Permanent link: http://hdl.handle.net/11104/0233965

0427975 - BFU-R 2015 RIV US eng J - Journal Article
Seitz, K. - Dursch, V. - Harnoš, J. - Bryja, Vítězslav - Gentzel, M. - Schambony, A.
beta-Arrestin Interacts with the Beta/Gamma Subunits of Trimeric G-Proteins and Dishevelled in the Wnt/Ca2+ Pathway in Xenopus Gastrulation.
PLoS ONE. Roč. 9, č. 1 (2014). ISSN 1932-6203
R&D Projects: GA ČR(CZ) GC204/09/J030
Not R&D Projects: GA ČR(CZ) GA204/09/0498
Institutional Support: RVO:68081707
Keywords: CONVERGENT EXTENSION MOVEMENTS * WNT SIGNALING PATHWAYS * WNT/BETA-CATENIN
Subject RIV: BO - Biophysics
Impact factor: 3.534, year: 2013
Permanent link: http://hdl.handle.net/11104/0233414

0427960 - BFU-R 2015 RIV GB eng J - Journal Article
Schrumpfová, P. - Vychodilová, I. - Dvořáčková, Martina - Majerská, J. - Dokládal, Ladislav - Schorová, Š. - Fajkus, Jiří
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
Plant Journal. Roč. 77, č. 5 (2014), s. 770-781. ISSN 0960-7412
R&D Projects: GA MŠk(CZ) ED1.1.00/02.0068; GA ČR(CZ) GA13-06943S
Institutional Support: RVO:68081707
Keywords: telomere protein interaction * telomere repeat binding * Arabidopsis thaliana
Subject RIV: BO - Biophysics
Impact factor: 6.815, year: 2013
Permanent link: http://hdl.handle.net/11104/0233396

0429112 - UOCHB-X 2015 CZ eng C - Proceedings Paper (International conf.)
Simonova, Anna - Havran, Luděk - Fojta, Miroslav - Hocek, Michal
New oxidative labels for electrochemical detection of DNA.
Chemistry of Nucleic Acid Components. 16th Symposium. Praha : Institute of Organic Chemistry and Biochemistry AS CR, v. v. i, 2014 - (Hocek, M.), s. 365-366 ISBN 978-80-86241-50-0. - (Collection Symposium Series. 14).
[Symposium on Chemistry of Nucleic Acid Components /16./. Český Krumlov (CZ), 08.06.2014-13.06.2014]
R&D Projects: GA ČR GBP206/12/G151; GA AV ČR(CZ) IAA400040901
Institutional Support: RVO:61388963 ; RVO:68081707
Keywords: dNTPs * DNA * electrochemical properties
Subject RIV: CC - Organic Chemistry; BO - Biophysics
Permanent link: http://hdl.handle.net/11104/0234447

0431573 - BFU-R 2015 RIV NL eng J - Journal Article
Skender, Belma - Hofmanová, Jiřina - Slavík, J. - Jelínková, Iva - Machala, M. - Moyer, M.P. - Kozubík, Alois - Vaculová, Alena
DHA-mediated enhancement of TRAIL-induced apoptosis in colon cancer cells is associated with engagement of mitochondria and specific alterations in sphingolipid metabolism.
Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids. Roč. 1841, č. 9 (2014), s. 1308-1317. ISSN 1388-1981
R&D Projects: GA ČR(CZ) GAP301/11/1730; GA ČR(CZ) GA13-09766S
Institutional Support: RVO:68081707
Keywords: Docosahexaenoic acid * TRAIL * Apoptosis
Subject RIV: BO - Biophysics
Impact factor: 4.495, year: 2013
Permanent link: http://hdl.handle.net/11104/0236221

0431756 - BFU-R 2015 RIV US eng J - Journal Article
Sripathi, K.N. - Tay, W.W. - Banáš, P. - Otyepka, M. - Šponer, Jiří - Walter, N. G.
Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape.
R N A. Roč. 20, č. 7 (2014), s. 1112-1128. ISSN 1355-8382
R&D Projects: GA MŠk(CZ) ED1.1.00/02.0068; GA ČR(CZ) GAP208/12/1878
Institutional Support: RVO:68081707
Keywords: time-resolved FRET * steady-state FRET * small ribozyme
Subject RIV: BO - Biophysics
Impact factor: 4.622, year: 2013
Permanent link: http://hdl.handle.net/11104/0236328

0431757 - BFU-R 2015 RIV DE eng J - Journal Article
Stejskalová, Eva - Horáková, Petra - Vacek, J. - Bowater, R. P. - Fojta, Miroslav
Enzyme-linked electrochemical DNA ligation assay using magnetic beads.
Analytical and Bioanalytical Chemistry. Roč. 406, č. 17 (2014), s. 4129-4136. ISSN 1618-2642
R&D Projects: GA ČR(CZ) GPP206/11/P739; GA ČR(CZ) GAP206/11/1638; GA AV ČR(CZ) IAA400040901
Institutional Support: RVO:68081707
Keywords: Electrochemistry * Enzyme labeling * DNA ligase
Subject RIV: BO - Biophysics
Impact factor: 3.578, year: 2013
Permanent link: http://hdl.handle.net/11104/0236329

0427972 - BFU-R 2015 RIV DE eng J - Journal Article
Szabla, Rafal - Gora, R.W. - Šponer, Jiří - Šponer, Judit E.
Molecular Mechanism of Diaminomaleonitrile to Diaminofumaronitrile Photoisomerization: An Intermediate Step in the Prebiotic Formation of Purine Nucleobases.
Chemistry - A European Journal. Roč. 20, č. 9 (2014), s. 2515-2521. ISSN 0947-6539
R&D Projects: GA ČR(CZ) GAP208/10/2302; GA MŠk(CZ) ED1.1.00/02.0068
Institutional Support: RVO:68081707
Keywords: isomerization * nucleobases * nucleotides
Subject RIV: BO - Biophysics
Impact factor: 5.696, year: 2013
Permanent link: http://hdl.handle.net/11104/0233412

0424729 - BFU-R 2014 RIV CH eng J - Journal Article
Šteflová, Pavlína - Hobza, R. - Vyskot, Boris - Kejnovský, Eduard
Strong Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia.
Cytogenetics and Genome Research. Roč. 142, č. 1 (2014), s. 59-65. ISSN 1424-8581
R&D Projects: GA ČR(CZ) GAP305/10/0930; GA ČR(CZ) GAP501/10/0102; GA ČR(CZ) GBP501/12/G090; GA ČR GAP501/12/2220; GA ČR(CZ) GA522/09/0083
Institutional Support: CEZ:AV0Z50040702
Institutional Support: RVO:68081707
Keywords: Chloroplast DNA * Rumex acetosa * Sex chromosomes
Subject RIV: BO - Biophysics
Impact factor: 1.905, year: 2013
Permanent link: http://hdl.handle.net/11104/0230762

0428666 - BFU-R 2015 RIV GB eng J - Journal Article
Vašíček, Ondřej - Lojek, Antonín - Jančinová, V. - Nosál, R. - Číž, Milan
Role of histamine receptors in the effects of histamine on the production of reactive oxygen species by whole blood phagocytes.
Life Sciences. Roč. 100, č. 1 (2014), s. 67-72. ISSN 0024-3205
R&D Projects: GA MŠk(CZ) LD11010
Institutional Support: RVO:68081707
Keywords: Histamine * Histamine receptors * Reactive oxygen species
Subject RIV: BO - Biophysics
Impact factor: 2.296, year: 2013
Permanent link: http://hdl.handle.net/11104/0233971

0428340 - BFU-R 2015 RIV NL eng J - Journal Article
Vítová, Lada - Fojt, Lukáš - Vespalec, Radim
Indirect photometric detection of boron cluster anions electrophoretically separated in methanol.
Journal of Chromatography A. Roč. 1338, APR 2014 (2014), s. 174-183. ISSN 0021-9673
Institutional Support: RVO:68081707
Keywords: Boron cluster * Capillary electrophoresis * Indirect photometry
Subject RIV: BO - Biophysics
Impact factor: 4.258, year: 2013
Permanent link: http://hdl.handle.net/11104/0233699

0431584 - BFU-R 2015 RIV US eng J - Journal Article
Zgarbová, M. - Otyepka, Michal - Šponer, Jiří - Lankaš, Filip - Jurečka, P.
Base Pair Fraying in Molecular Dynamics Simulations of DNA and RNA.
Journal of Chemical Theory and Computation. Roč. 10, č. 8 (2014), s. 3177-3189. ISSN 1549-9618
R&D Projects: GA ČR(CZ) GP14-29874P
Institutional Support: RVO:68081707 ; RVO:61388963
Keywords: QUANTUM-CHEMICAL COMPUTATIONS * NUCLEIC-ACID STRUCTURES * AMBER FORCE-FIELD
Subject RIV: BO - Biophysics; CC - Organic Chemistry
Impact factor: 5.310, year: 2013
Permanent link: http://hdl.handle.net/11104/0236317