Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

Position:

research project leader

Phone:

+420 585 238 715

Fax:

+420 585 238 704

E-mail:

simkovah

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31, CZ-783 71, Olomouc - Holice, Czech Republic

Room number:

206

Education

Professional Experience

1997 – 2000 Postdoctoral Fellow, Laboratory of Molecular Cytogentics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2001 – present Senior Scientist, Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2006 – present Lecturer, Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic

Recent Research Activities

Development of procedure for preparation of high-molecular-weight DNA from flow-sorted chromosomes
Optimization of procedure and construction of chromosome-specific BAC libraries
Development of procedure for multiple-displacement amplification of flow-sorted chromosomes
Map-based cloning of a Russian wheat aphid resistance gene
Construction of physical map and sequencing of wheat chromosome arm 7DS
Genome mapping in nanochannel arrays ("optical mapping")

All User Publications:

Number of publications: 68

Chromosome isolation by flow sorting in Aegilops umbellulata and Ae. comosa and their allotetraploid hybrids Ae. biuncialis and Ae. geniculata

Molnár, I., Kubaláková, M., Šimková, H., Cseh, A., Molnár-Láng, M., Doležel, J.
PLoS ONE 6 (11), e27708, 2011 Fulltext: PDF link on intranet only

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

Luo, M.-Ch., Ma, Y., You, F. M., Anderson, O. D., Kopecký, D., Šimková, H., Šafář, J., Doležel, J., Gill, B., McGuire, P., Dvořák, J.
BMC GENOMICS 11, 122, 2010 Fulltext: PDF link on intranet only
Development of chromosome-specific BAC resources for genomics of bread wheat

Šafář, J., Šimková, H., Kubaláková, M., Číhalíková, J., Suchánková, P., Bartoš, J., Doležel, J.
CYTOGENETIC AND GENOME RESEARCH 129, 211-223, 2010 Fulltext: PDF link on intranet only
Isolated chromosomes as a new and efficient source of DArT markers for the saturation of genetic maps

Wenzl, P., Suchánková, P., Carling, J., Šimková, H., Huttner, E., Kubaláková, M., Sourdille, P., Paul, E., Feuillet, C., Kilian, A., Doležel, J.
THEORETICAL AND APPLIED GENETICS 121, 465-474, 2010 Fulltext: PDF link on intranet only

Chromosome genomics in the Triticeae

Doležel, J., Šimková, H., Kubaláková, M., Šafář, J., Suchánková, P., Číhalíková, J., Bartoš, J., Valárik, M.
Fulltext: PDF link on intranet only
Gene content and virtual gene order of barley chromosome 1H

Mayer, K.F.X., Taudien, S., Martis, M., Šimková, H., Suchánková, P., Gundlach, H., Wicker, T., Petzold, A., Felder, M., Steuernagel, B., Scholz, U., Graner, A., Platzer, M., Doležel, J., Stein, N.
PLANT PHYSIOLOGY 151, 496-505, 2009 Fulltext: PDF link on intranet only
Generating resources for genomics of wheat homoeologous chromosome group 3: 3AS- and 3DS-specific BAC libraries

Šafář, J., Šimková, H., Kubaláková, M., Suchánková, P., Číhalíková, J., Bartoš, J., Fiocchetti, F., Roselli, M., Gill, B.S., Doležel, J., Lucretti, S.

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R

Bartoš, J., Paux, E., Kofler, R., Havránková, M., Kopecký, D., Suchánková, P., Šafář, J., Šimková, H., Town, C.D., Lelley, T., Feuillet, C., Doležel, J.
BMC PLANT BIOLOGY 8, , 2008 Fulltext: PDF link on intranet only
Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1

Kofler, R., Bartoš, J., Gong, L., Stift, G., Suchánková, P., Šimková, H., Berenyi, M., Burg, K., Doležel, J., Lelley, T.
THEORETICAL AND APPLIED GENETICS 117, 915-926, 2008 Fulltext: PDF link on intranet only
A physical map of the 1-gigabase bread wheat chromosome 3B

Paux, E., Sourdille, P., Salse, J., Saintenac, C., Choulet, F., Leroy, P., Korol, A., Michalak, M., Kianian, S., Spielmeyer, W., Lagudah, E., Somers, D., Kilian, A., Alaux, M., Vautrin, S., Berges, H., Eversole, K., Appels, R., Šafář, J., Šimková, H., Doležel, J., Bernard, M., Feuillet, C.
SCIENCE 322, 101-104, 2008 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR