Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

2011

• Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
  Berkman, P.J., Skarshewski, A., Lorenc, M.T., Lai, K., Duran, Ch., Ling, E.Y.S., Stiller, J., Smits, L., Imelfort, M., Manoli, S., McKenzie, M., Kubaláková, M., Šimková, H., Batley, J., Fleury, D., Doležel, J., Edwards, D.
  PLANT BIOTECHNOLOGY JOURNAL 9, 768-775, 2011 Fulltext: PDF link on intranet only
• Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes
  Zatloukalová, P., Hřibová, E., Kubaláková, M., Suchánková, P., Šimková, H., Adoración, C., Kahl, G., Millán, T., Doležel, J.
  CHROMOSOME RESEARCH 19, 729-739, 2011 Fulltext: PDF link on intranet only
• BAC libraries from wheat chromosome 7D – efficient tool for positional cloning of aphid resistance genes
  Šimková, H., Šafář, J., Kubaláková, M., Suchánková, P., Číhalíková, J., Robert-Quatre, H., Azhaguvel, P., Weng, Y., Peng, J., Lapitan, N.L.V., Ma, Y., You, F.M., Luo, M-Ch., Bartoš, J., Doležel, J.
  Fulltext: PDF link on intranet only
• Chromosome analysis and sorting using flow cytometry
  Doležel, J., Kubaláková, M., Číhalíková, J., Suchánková, P., Šimková, H.
  Fulltext: PDF link on intranet only
• Unlocking the barley genome by chromosomal and comparative genomics
  Mayer, K.F.X., Martis, M., Hedley, P.E., Šimková, H., Liu, H., Morris, J.A., Steuernagel, B., Taudien, S., Roessner, S., Gundlach, H., Kubaláková, M., Suchánková, P.,Murat, F., Felder, M., Nussbaumer, T., Graner, A., Salse, J., Endo, T.R., Sakai, H., Tanaka, T., Itoh, T., Sato, K., Platzer, M., Matsumoto, T., Scholz, U., Doležel, J., Waugh, R., Stein, N.
  PLANT CELL 23, 1249-1263, 2011 Fulltext: PDF link on intranet only
• Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives
  Wicker, T., Mayer, K.F.X., Gundlach, H., Martis, M., Steuernagel, B., Scholz, U., Šimková, H., Kubaláková, M., Choulet, F., Taudien, S., Platzer, M., Feuillet, C., Fahima, T., Budak, H., Doležel, J., Keller, B., Stein, N.
  PLANT CELL 23, 1706-1718, 2011 Fulltext: PDF link on intranet only
• First survey of the wheat chromosome 5A composition through a next generation sequencing approach
  Vitulo, N., Albiero, A., Forcato, C., Campagna, D., Dal Pero, F., Bagnaresi, P., Colaiacovo, M., Faccioli, P., Lamontanara, A, Šimková, H., Kubaláková, M., Perrotta, G., Facella, P., Lopez, L., Pietrella, M., Gianese, G., Doležel, J., Giuliano, G., Cattivelli, L., Valle, G., Stanca, A.M.
  PLoS ONE 6 (10), e26421, 2011 Fulltext: PDF link on intranet only
• A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat
  Rustenholz, C., Choulet, F., Laugier, C., Šafář, J., Šimková, H., Doležel, J., Magni, F., Scalabrin, S., Cattonaro, F., Vautrin, S., Bellec, A., Bergès, H., Feuillet, C., Paux, E.
  PLANT PHYSIOLOGY 157 (4), 1596-1608, 2011 Fulltext: PDF link on intranet only
• A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.
  Parlange, F., Oberhaensli, S., Breen, J., Platzer, M., Taudien, S., Šimková, H., Wicker, T., Doležel, J., Keller, B.
  FUNCTIONAL & INTEGRATIVE GENOMICS 11 (4), 671-677, 2011 Fulltext: PDF link on intranet only
• An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers.
  Muñoz-Amatriaín, M., Moscou, M.J., Bhat, P.R., Svensson, J.T., Bartoš, J., Suchánková, P., Šimková, H., Endo, T.R., Fenton, R.D., Lonardi, S., Castillo, A.M., Chao, S., Cistué, L., Cuesta-Marcos, A., Forrest, K.L., Hayden, M.J., Hayes, P.M., Horsley, R.D., Makoto, K., Moody, D., Sato, K., Vallés, M.P., Wulff, B.B.H., Muehlbauer, G.J., Doležel, J., Close, T.J.
  THE PLANT GENOME 4 (3), 238-249, 2011 Fulltext: PDF link on intranet only