Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

Hana Šimková, Ph.D.

Position:

research project leader

Phone:

+420 585 238 715

Fax:

+420 585 238 704

E-mail:

simkovah

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31, CZ-783 71, Olomouc - Holice, Czech Republic

Room number:

206

Education

M.Sc., University of Agriculture, Brno (1989), Phytotechnics
Ph.D., Academy of Sciences of the Czech Republic, Prague (1997), Genetics

Professional Experience

1997 – 2000 Postdoctoral Fellow, Laboratory of Molecular Cytogentics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2001 – present Senior Scientist, Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2006 – present Lecturer, Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic

Recent Research Activities

Development of procedure for preparation of high-molecular-weight DNA from flow-sorted chromosomes
Optimization of procedure and construction of chromosome-specific BAC libraries
Development of procedure for multiple-displacement amplification of flow-sorted chromosomes
Map-based cloning of a Russian wheat aphid resistance gene
Construction of physical map and sequencing of wheat chromosome arm 7DS
Genome mapping in nanochannel arrays ("optical mapping")

All User Publications:

Number of publications: 68

2014

Advances in plant chromosome genomics

Doležel, J., Vrána, J., Cápal, P., Kubaláková, M., Burešová, V., Šimková, H.
BIOTECHNOLOGY ADVANCES 32, 122-136, 2014 Fulltext: PDF link on intranet only
The Wheat Black Jack: Advances towards sequencing the 21 chromosomes of bread wheat

Choulet, F., Caccamo, M., Wright, J., Alaux, M., Šimková, H., Šafář, J., Leroy, P., Doležel, J., Rogers, J., Eversole, K., Feuillet, C.
Fulltext: PDF link on intranet only
Computational identification and comparative analysis of miRNAs in wheat group 7 chromosomes

Deng, P., Nie, X., Wang, L., Cui, L., Liu, P., Tong, W., Biradar, S.S., Edwards, D., Berkman, P., Šimková, H., Doležel, J., Luo, M., You, F., Batley, J., Fleury, D., Appels, R., Weining, S.
PLANT MOLECULAR BIOLOGY REPORTER 32, 487-500, 2014 Fulltext: PDF link on intranet only
Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii

Molnár, I., Kubaláková, M., Šimková, H., Farkas, A., Cseh, A., Megyeri, M., Vrána, J., Molnár-Láng, M., Doležel, J.
THEORETICAL AND APPLIED GENETICS 127, 1091-1104, 2014 Fulltext: PDF link on intranet only
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

The International Wheat Genome Sequencing Consortium (IWGSC)
SCIENCE 345(6194), 1251788, 2014 Fulltext: PDF link on intranet only
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

Ruperao, P., Chan, C.K., Azam, S., Karafiátová, M., Hayashi, S., Cížková, J., Saxena, R.K., Šimková, H., Song, C., Vrána, J., Chitikineni, A., Visendi, P., Gaur, P.M., Millán, T., Singh, K.B., Taran, B., Wang, J., Batley, J., Doležel, J., Varshney, R.K., Edwards, D.
PLANT BIOTECHNOLOGY JOURNAL 12, 778-786, 2014 Fulltext: PDF link on intranet only

2013

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat

Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Šimková, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Doležel, J., Gill, B.S.
PLANT PHYSIOLOGY 161, 252–265, 2013 Fulltext: PDF link on intranet only
Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Shatalina, M., Wicker, T., Buchmann, J.P., Oberhaensli, S., Šimková, H., Doležel, J., Keller, B.
PLANT BIOTECHNOLOGY JOURNAL 11, 23-32, 2013 Fulltext: PDF link on intranet only
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

Luo, M.-C., Gu, Y.Q., You, F.M., Deal, K.R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C.M., Zhang, Y., McGuire, P.E., Pasternak, S., Stein, J.C., Ware, D., Kramer, M., McCombie, W.R., Kianian, S.F., Martis, M.M., Mayer, K.F.X., Sehgal, S.K., Li, W., Gill, B.S., Bevan, M.W., Šimková, H., Doležel, J., Weining, S., Lazo, G.R., Anderson, O.D., Dvorak, J.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110, 7940-7945, 2013 Fulltext: PDF link on intranet only
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Philippe, R., Paux, E., Bertin, I., Sourdille, P., Choulet, F., Laugier, C., Šimková, H., Šafář, J., Bellec, A., Vautrin, S., Frenkel, Z., Cattonaro, F., Magni, F., Scalabrin, S., Martis, M.M., Mayer, K.F.X., Korol, A., Bergès, H., Doležel, J., Feuillet, C.
GENOME BIOLOGY 14, R64, 2013 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, Ph.D.

2014

2013

Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, Ph.D.

2014

2013

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR