Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

Position:

research project leader

Phone:

+420 585 238 710

Fax:

+420 585 238 704

E-mail:

safar

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31 783 71 Olomouc - Holice

Room number:

204

Academic degrees Appointments

2009 – present

Scientist, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic

2004 – 2008

Posdoctoral Fellow, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic

Research interests

1999 – present

BAC library construction

2005 – present

physical genome mapping

All User Publications:

Number of publications: 39

Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec Z., Valárik M., Bartoš J., Šafář J.
BIOTECHNOLOGY ADVANCES 32, 200-214, 2014 Fulltext: PDF link on intranet only
Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec, Z., Valárik, M., Bartoš, J., Šafář, J.
BIOTECHNOLOGY ADVANCES 32, 200-214, 2014 Fulltext: PDF link on intranet only
The Wheat Black Jack: Advances towards sequencing the 21 chromosomes of bread wheat

Choulet, F., Caccamo, M., Wright, J., Alaux, M., Šimková, H., Šafář, J., Leroy, P., Doležel, J., Rogers, J., Eversole, K., Feuillet, C.
Fulltext: PDF link on intranet only
Structural and functional partitioning of bread wheat chromosome 3B

Choulet, F., Alberti, A., Theil, S., Glover, N., Barbe, V., Daron, J., Pingault, L., Sourdille, P., Couloux, A., Paux, E., Leroy, P., Mangenot, S., Guilhot, N., Le Gouis, J., Balfourier, F., Alaux, M., Jamilloux, V., Poulain, J., Durand, C., Bellec, A., Gaspin, C., Šafář, J., Doležel, J., Rogers, J., Vandepoele, K., Aury, JM., Mayer, K., Berges, H., Quesneville, H., Wincker, P., Feuillet, C.
SCIENCE 345(6194), 1249721, 2014 Fulltext: PDF link on intranet only

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Philippe, R., Paux, E., Bertin, I., Sourdille, P., Choulet, F., Laugier, C., Šimková, H., Šafář, J., Bellec, A., Vautrin, S., Frenkel, Z., Cattonaro, F., Magni, F., Scalabrin, S., Martis, M.M., Mayer, K.F.X., Korol, A., Bergès, H., Doležel, J., Feuillet, C.
GENOME BIOLOGY 14, R64, 2013 Fulltext: PDF link on intranet only
Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
PLoS ONE 8, e59542, 2013 Fulltext: PDF link on intranet only
A physical map of the short arm of wheat chromosome 1A

Breen, J., Wicker, T., Shatalina, M., Frenkel, Z., Bertin, I., Philippe, R., Spielmeyer, W., Šimková, H., Šafář, J., Cattonaro, F., Scalabrin, S., Magni, F., Vautrin, S., Berges, H., International Wheat Genome Sequencing Consortium, Paux, E., Fahima, T., Doležel, J., Korol, A., Feuillet, C., Keller, B.
PLoS ONE 8, e80272, 2013 Fulltext: PDF link on intranet only

Genomic diversity in two related plant species with and without sex chromosomes - Silene latifolia and S. vulgaris

Cegan, R., Vyskot, B., Kejnovsky, E., Kubat, Z., Blavet, H., Šafář, J., Doležel, J., Blavet, N., Hobza, R.
PLoS ONE 7(2), e31898, 2012 Fulltext: PDF link on intranet only
Functional features of a single chromosome arm in wheat (1AL) determined from its structure

Lucas, S.J., Šimková, H., Šafář, J., Jurman, I., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12, 173–182, 2012 Fulltext: PDF link on intranet only
Chromosomes in the flow to simplify genome analysis

Doležel, J., Vrána, J., Šafář, J., Bartoš, J., Kubaláková, M., Šimková, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12, 397-416, 2012 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR