Publikace

2014

• Conrad, S., Azizi, H., Hatami, M., Kubista, M., Bonin, M., Hennenlotter, J., Renninger, M., Skutella, T. Differential gene expression profiling of enriched human spermatogonia after short- and long-term culture. Biomed Research International, 2014. Article Number: 138350, doi: 10.1155/2014/138350. ISSN 2314-6133. eISSN 2314-6141.
• Slyskova, J., Cordero, F., Pardini, B., Korenkova, V., Vymetalkova ,V., Bielik, L., Vodickova, L., Pitule, P., Liska, V., Matejka, V. M., Levy, M., Buchler, T., Kubista, M., Naccarati, A., Vodicka, P. Post-treatment recovery of suboptimal DNA repair capacity and gene expression levels in colorectal cancer patients. Molecular Carcinogenesis, 2014.
• Vymetalkova, V. P., Slyskova, J., Korenkova ,V., Bielik, L., Langerova, L., Prochazka, P., Rejhova, A., Schwarzova, L., Pardini, B., Naccarati, A., Vodicka, P. Molecular characteristics of mismatch repair genes in sporadic colorectal tumors in Czech patients. BMC Med Genet., 15(1):17, 2014. doi: 10.1186/1471-2350-15-17. ISSN 1471-2350.
• Zatecka, E., Ded, L., Elzeinova, F., Kubatova, A., Dorosh, A., Margaryan, H., Dostalova, P., Korenkova, V., Hoskova, K., Peknicova, J. Effect of zearalenone on reproductive parameters and expression of selected testicular genes in mice. Reproductive toxicology, 45: 20-30, 2014. doi:10.1016/j.reprotox.2014.01.003. ISSN 1873-1708.
• Ståhlberg, A., Kubista, M. The workflow of single-cell expression profiling using quantitative real-time PCR. Expert Rev. Mol. Diagn. 14(3): 323–331, 2014,  ISSN 1473-7159.
• Ståhlberg, A., Åman, P., Strömbom, L., Zoric, N., Diez, A., Nilsson, O., Kubista, M., Ridell, B. Comparison of Reverse Transcription Quantitative Real-Time PCR, Flow Cytometry, and Immunohistochemistry for Detection of Monoclonality in Lymphomas. Hindawi Publishing Corporation, 2014: 1-6, 2014.

2013

• Sorg, G., Danowski, K., Korenkova, V., Rusnakova, V., Kueffner, R., Zimmer, R., Meyer, H. H. D., Kliem, H. Microfluidic high-throughput RT-qPCR measurements of the immune response of primary bovine mammary epithelial cells cultured from milk to mastitis pathogens. Animal, 7(5): 799-805, 2013. ISSN 1751-7311.
• Bustin, S. A., Benes, V., Garson, J., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl, M. W., Shipley, G., Wittwer, C. T., Schjerling, P., Day, P. J., Abreu, M., Aguado, B., Beaulieu, J. F., Beckers, A., Bogaert, S., Browne, J. A., Carrasco-Ramiro, F., Ceelen, L., Ciborowski, K., Cornillie, P., Coulon, S., Cuypers, A., De Brouwer, S., De Ceuninck, L., De Craene, J., De Naeyer, H., De Spiegelaere, W., Deckers, K., Dheedene, A., Durinck, K., Ferreira-Teixeira, M., Fieuw, A., Gallup, J. M., Gonzalo-Flores, S., Goossens, K., Heindryckx, F., Herring, E., Hoenicka, H., Icardi, L., Jaggi, R., Javad, F., Karampelias, M., Kibenge, F., Kibenge, M., Kumps, C., Lambertz, I., Lammens, T., Markey, A., Messiaen, P., Mets, E., Morais, S., Mudarra-Rubio, A., Nakiwala, J., Nelis, H., Olsvik, P. A., Pérez-Novo, C., Plusquin, M., Remans, T., Rihani, A., Rodrigues-Santos, P., Rondou, P., Sanders, R., Schmidt-Bleek, K., Skovgaard, K., Smeets, K., Tabera, L., Toegel, S., Van Acker, T., Van den Broeck, W., Van der Meulen, J., Van Gele, M., Van Peer, G., Van Poucke, M., Van Roy, N., Vergult, S., Wauman, J., Tshuikina-Wiklander, M., Willems, E., Zaccara, S., Zeka, F., Vandesompele, J. The need for transparency and good practices in the qPCR literature. Nature Methods, 10: 1063–1067, 2013. ISSN 1548-7091.
• Svec, D., Andersson, D., Pekny M., Sjöback, R., Kubista, M., Ståhlberg, A. Direct cell lysis for single-cell gene expression profiling. Front. Oncol, 3(274): 1-11, 2013.
• Butenko, O., Benesova, J., Mikesova, M., Honsa, P., Dzamba, D., Kriska, J., Rusnakova, V., Kubista, M., Anderova, M. The fate of mdach1-expressing cells in the dorsal part of the lateral ventricles following focal cerebral ischemia. GLIA, 61(1): 207, 2013. ISSN 0894-1491.

• Huggett, J. F., Foy, C. A., Benes, V., Emslie, K., Garson, J. A., Haynes, R., Hellemans, J., Kubista, M., Mueller, R. D., Nolan, T., Pfaffl, M. W., Shipley, G. L., Vandesompele, J., Bustin, S. A. The digital MIQE guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments. Clinical Chemistry, 59(6): 892-902, 2013. ISSN 0009-9147.
• Stahlberg, A, Rusnakova, V, Kubista, M. The added value of single-cell gene expression profiling. Brief Funct Genomics, 12(2): 81-89, 2013. ISSN 2041-2649.
• Stahlberg, A., Rusnakova, V., Forootan, A., Anderova, M., Kubista, M. RT-qPCR work-flow for single-cell data analysis. Methods, 59(1): 80-88, 2013, ISSN 1046-2023.
• Pazzagli, M., Malentacchi, F., Simi, L., Wyrich, R., Guenther, K., Hartmann, C., Verderio, P., Pizzamiglio, S., Ciniselli, C. M., Tichopád, A., Kubista, M., Gelmini, S. SPIDIA-RNA: First external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses. Methods, 59(1): 20-31, 2013. ISSN 1046-2023.
• Stahlberg, A., Kubista, M. Unrevealing biological secrets by single cell expression profilig. Drug Discovery World Summer, 2013.
• Andersson, D., Wilhelmsson, U., Nilsson, M., Kubista, M., Ståhlberg, A., Pekna, M., Pekny, M. Plasticity response in the contralesional hemisphere after subtle neurotrauma: gene expression profiling after partial deafferentation of the hippocampus. PLoS ONE, 8(7): e706992013, 2013. ISSN 1932-6203.
• Flachsova, M., Sindelka, R., Kubista, M. Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry. Scientific Reports, 3: 2278, 2013. ISSN: 2045-2322.
• Virant-Klun, I., Skutella, T., Kubista, M., Vogler A., Sinkovec, J., Meden-Vrtovec, H. Expression of Pluripotency and Oocyte-Related Genes in Single Putative Stem Cells from Human Adult Ovarian Surface Epithelium Cultured In Vitro in the Presence of Follicular Fluid. BioMed Research International, 861460, 2013. ISSN: 2314-6133.
• Rusnakova, V., Honsa, P., Dzamba, D., Ståhlberg A., Kubista, M., Anderova, M. Heterogeneity of Astrocytes: From Development to Injury – Single Cell Gene Expression. PLoS ONE 8(8): e69734, 2013. ISSN 1932-6203.
• Malentacchi, F., Pazzagli, M., Simi, L., Orlando, C., Wyrich, R., Hartmann, C. C., Verderio, P., Pizzamiglio, S., Ciniselli, C. M., Tichopad, A., Kubista, M., Gelmini, S. SPIDIA-DNA: An External Quality Assessment for the pre-analytical phase of blood samples used for DNA-based analyses. Clinica Chimica Acta 424: 274–286, 2013. ISSN 0009-8981.
• Dusatkova, L., Zamrazilova, H., Sedlacková, B., Vcelak, J., Hlavaty, P., Aldhoon Hainerova, I., Korenkova, V., Bradnova, O., Bendlova, B., Kunesova, M., Hainer, V. Association of obesity susceptibility gene variants with metabolic syndrome and related traits in 1,443 czech adolescents. Folia Biologica 59: 123-133, 2013. ISSN 0015-5500.

2012

• Bar, T., Kubista, M., Tichopad, A. Validation of kinetics similarity in qPCR. Nucleic Acids Research, 40: 1395-1406, 2012. ISSN 0305-1048. 
• Benesova, J., Rusnakova, V., Honsa, P., Pivonkova, H., Dzamba, D., Kubista, M., Anderova, M. Distinct expression/function of potassium and chloride channels contributes to the diverse volume regulation in cortical astrocytes of GFAP/EGFP mice. PLoS ONE, 7: e29725, 2012. ISSN 1932-6203. 
• Bibova, I., Linhartova, I., Stanek, O., Rusnakova, V., Kubista, M., Suchanek, M., Vasakova, M., Sebo, P. Detection of immune cell response to M. tuberculosis-specific antigens by quantitative polymerase chain reaction. Diagnostic Microbiology and Infectious Disease, 72: 68-78, 2012. ISSN 0732-8893. 
• Guenther, K., Malentacchi, F., Verderio, P., Pizzamiglio, S., Ciniselli, Ch. M., Tichopad, A., Kubista, M., Wyrich, R., Pazzagli, M., Gelmini, S. Implementation of a proficiency testing for the assessment of the preanalytical phase of blood samples used for RNA based analysis. Clinica Chimica Acta, 413: 779-786, 2012. ISSN 0009-8981. 
• Laurell, H., Iacovoni, J., Abot, A., Svec, D., Maoret, J.-J., Arnal, J.-F., Kubista, M. Correction of RT-qPCR data for genomic DNA-derived signals with ValidPrime. Nucleic Acids Research, 40: 1-10, 2012. ISSN 0305-1048. 
• Stimpfel, M., Skutella, T., Kubista, M., Malicev, E., Conrad, S., Virant-Klun, I. Potential Stemness of Frozen-Thawed Testicular Biopsies without Sperm in Infertile Men Included into the In Vitro Fertilization Programme. Journal of Biomedicine and Biotechnology, 291038: 1-15, 2012. ISSN 1110-7243. 
• Slyskova, J., Korenkova, V., Collins, A. R., Prochazka, P., Vodickova, L., Svec, J., Lipska, L., Levy, M., Schneiderova, M., Liska, V., Holubec, L., Kumar, R., Soucek, P., Naccarati, A., Vodicka, P. Functional, Genetic, and Epigenetic Aspects of Base and Nucleotide Excision Repair in Colorectal Carcinoma. Clinical Cancer Research, 18:5878-5887, 2012. ISSN 1078-0432.
• Sorg, D., Danowski, K., Korenkova, V., Rusnakova, V., Küffner, R., Zimmer, R., Meyer, H. H., Kliem, H. Microfluidic high-throughput RTqPCR measurements of the immune response of primary bovine mammary epithelial cells cultured from milk to mastitis pathogens. Animal, 7(5): 799-805, 2012. ISSN 1751-7311.
• Ahmadi, S., Deligeorgiev, T. G., Vasilev, A., Kubista, M. The dimerization study of some cationic monomethine cyanine dyes by chemometrics method. Russian Journal of Physical Chemistry, 86(13): 1974-1981, 2012. ISSN 0036-0244.
• Kubista, M. Q & A. European Pharmaceutical Review, 17(5): 57, 2012.
• Kubista, M., Tichopad, A. Setting the bar. European Pharmaceutical Review, 17(5): 53-56, 2012.
• Kubista, M. I See the Light! And I See It Again and Again! Clinical Chemistry, 58(11): 1505-1506, 2012. ISSN 0009-9147.
• Guertler, P., Brandl, C., Meyer, H. H. D., Tichopad, A. Feeding genetically modified maize (MON810) to dairy cows: comparison of gene expression pattern of markers for apoptosis, inflammation and cell cycle. Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety, 7(3):195-202, 2012. ISSN 1661-5751.
• Butenko, O., Dzamba, D., Benesova, J., Honsa, P., Benfenati, V., Rusnakova, V., Ferroni, S., Anderova, M. The Increased Activity of TRPV4 Channel in the Astrocytes of the Adult Rat Hippocampus after Cerebral Hypoxia/Ischemia. PLoS ONE, 7(6): e39959, 2012. ISSN 1932-6203.
• Brevik, A., Lindeman, B., Rusnakova, V., Olsen, A. K., Brunborg, G., Duale, N. Paternal benzo[a]pyrene exposure affects gene expression in the early developing mouse embryo. Toxicological Sciences, 129(1), 2012. ISSN 1096-6080.
• Kubista, M., Rusnakova, V., Svec, D., Sjogreen, B., Tichopad, A. Genex: Data Analysis Software. Quantitative Real-Time PCR in Applied Microbiology, 63-84, 2012. ISBN 978-1-908230-01-0.
• Kubista, M. Drivers and Hurdles for qPCR. Genetic Engineering & Biotechnology News, 32(9): 24, 2012. ISSN 1935-472X.
   

• Kubista, M., Stahlberg, A. DNA diagnostics get digitased. Drug Discovery World, 2011.
• Kubista, M., Tichopad, A. qPCR Round Table. International Drug Discovery 2011.
• Gruber, H., Paul, V., Guertler, P., Spiekers, H., Tichopad, A., Meyer, H. H. D., Muller M. Fate of Cry1Ab Protein in Agricultural Systems under Slurry Management of Cows Fed Genetically Modified Maize (Zea mays L.) MON810: A Quantitative Assessment. J Agric Food Chem 2011.
• Kubista, M., Rusnakova, V., Svec, D., Stahlberg, A. High throughput single cell expression profiling: Taking a closer look on biological response. Clinical Chemistry and Laboratory Medicine, 49(1): 118, 2011. ISSN 1434-6621.
• Kubista, M., Strombom, L., Svec, D., Rusnakova, V., Stahlberg, A. High throughput single cell expression profiling: Taking a closer look on biological response. European Pharmaceutical Review, 16(2): 20-24, 2011.

•  Veiga, M. I., Ferreira, P. E., Schmidt, B. A., Ribacke, U., Bjorkman, A., Tichopad, A., Gil, J. P. Antimalarial Exposure Delays Plasmodium falciparum Intra-Erythrocytic Cycle and Drives Drug Transporter Genes Expression. PLoS ONE, 5(8): e12408, 2010. ISSN 1932-6203.
• Stahlberg, A., Andersson, D., Aurelius, J., Faiz, M., Pekna, M., Kubista, M., Pekny, M., Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations. Nucleic Acids Research, 39(4): 1-12, 2010. ISSN 0305-1048.
• Kolostova, K., Pinterova, D., Tesarova, P., Bobek, V., Mikulova, V., Kubecova, M., Brychta, M., Rusnakova, V., Bauer, S. K., Kubista, M. Gene expression profiling in circulation cells (CTCS) of breast carcinoma patients. Annals of Oncology, 21(4): 49-50, 2010.
• Stofkova, A., Zelezna, B., Romzova, M., Ulicna, O., Kiss, A., Skurlova, M., Jurcovicova, J. Effect of feeding status on adjuvant arthritis severity, cachexia, and insulin sensitivity in male Lewis rats. Mediators of Inflammation, Article No.: 398026, 2010. ISSN 0962-9351.
• Kubista, M. Real-time PCR: Where we are and where are we heading. Drug Discovery World Spring 2010.
• Ctrnacta, V., Fritzler, J. M., Surinova, M., Hrdy, I., Zhu, G., Stejskal, F. Efficacy of S-adenosylhomocysteine hydrolase inhibitors, D-eritadenine and (S)-DHPA, against the growth of Cryptosporidium parvum in vitro. Experimental Parasitology, 126(2): 113-116, 2010. ISSN:0014-4894.

• Kubista, M. Intracellular Gene Expression Profiles Revealed with Real-time PCR Tomography. Research Spotlight:Gene Expression, 2009.
• Kubista, M. What future holds for real-time PCR. European Pharmaceutical Reviews Industry Focus, 2009.
• Pytelkova, J., Hubert, J., Lepsik, M., Sobotnik, J., Sindelka, R., Krizkova, I., Horn, M., Mares, M. Digestive alpha-amylases of the flour moth Ephestia kuehniella - adaptation to alkaline environment and plant inhibitors. FEBS Journal, 276 (13): 3531-3546, 2009. doi: 10.1111/j.1742-4658.2009.07074.x. ISSN 1742-464X.