Institute of Experimental Botany AS CR
We are Discovering the Plant World

A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus

Michalak de Jimenez, M.K., Bassi, F.M., Ghavami, F., Simons, K., Dizon, R., Seetan, R.I., Alnemer, L.M., Denton, A.M., Doğramacı, M., Šimková, H., Doležel, J., Seth, K., Luo, M.-C., Dvorak, J., Gu, Y.Q., Kianian, S.F.
FUNCTIONAL & INTEGRATIVE GENOMICS 13 : 19-32 , 2013
Keywords: Species cytoplasm specific, Wheat Zapper, Synteny, Paleofusion, Alloplasmic, Cytoplasm substitution

Subgenomic analysis of microRNAs in polyploid wheat

Kantar, M., Akpınar, B.A., Valárik, M., Lucas, S.J., Doležel, J., Hernández, P., Budak, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12 : 465-479 , 2012
Keywords: Triticum aestivum, microRNA, miRNA prediction, Sub-genomic analysis, Next-generation sequencing

Chromosomes in the flow to simplify genome analysis

Doležel, J., Vrána, J., Šafář, J., Bartoš, J., Kubaláková, M., Šimková, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12 : 397-416 , 2012
Keywords: Chromosome sorting, Chromosome-specific BAC libraries, Chromosome sequencing, Chromosome genomics, Genome complexity reduction, Flow cytometry, Physical mapping

Functional features of a single chromosome arm in wheat (1AL) determined from its structure

Lucas, S.J., Šimková, H., Šafář, J., Jurman, I., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
FUNCTIONAL & INTEGRATIVE GENOMICS 12 : 173–182 , 2012
Keywords: Wheat, A genome, BAC end sequencing, Comparative genomics, Marker design

A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.

Parlange, F., Oberhaensli, S., Breen, J., Platzer, M., Taudien, S., Šimková, H., Wicker, T., Doležel, J., Keller, B.
FUNCTIONAL & INTEGRATIVE GENOMICS 11 (4) : 671-677 , 2011
Keywords: Blumeria graminis . BAC library . BAC-end sequences . Transposable elements

Transferases and transporters mediate the detoxification 5 and capacity to tolerate trinitrotoluene in Arabidopsis

Landa P., Štorchová H., Hodek J., Vaňková R., Podlipná R., Maršík P., Ovesná J., Vaněk T.
FUNCTIONAL & INTEGRATIVE GENOMICS 10 : 547–559 , 2010
Keywords: Microarrays, Arabidopsis thaliana, TNT, Phytoremediation, Toxicity, Xenobiotic, Transcriptome comparison, Detoxification pathways