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Hana Šimková, Ph.D.

Position: 
research project leader

Phone: 
+420 585 238 715
Fax: 
+420 585 238 704
E-mail: 
simkovahatueb [dot] cas [dot] cz

Address: 
Šlechtitelů 31, CZ-783 71, Olomouc - Holice, Czech Republic
Room number: 
206

Education

  •  M.Sc., University of Agriculture, Brno (1989), Phytotechnics
  •  Ph.D., Academy of Sciences of the Czech Republic, Prague (1997), Genetics

Professional Experience

  • 1997 – 2000        Postdoctoral Fellow, Laboratory of Molecular Cytogentics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
  • 2001 – present     Senior Scientist, Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
  • 2006 – present     Lecturer, Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic

Recent Research Activities

  •  Development of procedure for preparation of high-molecular-weight DNA from flow-sorted chromosomes
  •  Optimization of procedure and construction of chromosome-specific BAC libraries
  •  Development of procedure for multiple-displacement amplification of flow-sorted chromosomes
  •  Map-based cloning of a Russian wheat aphid resistance gene
  •  Construction of physical map and sequencing of wheat chromosome arm 7DS
  •  Genome mapping in nanochannel arrays ("optical mapping")

All User Publications:
Number of publications: 76

2015

2014

  • Advances in plant chromosome genomics
    Doležel, J., Vrána, J., Cápal, P., Kubaláková, M., Burešová, V., Šimková, H.
    BIOTECHNOLOGY ADVANCES 32, 122-136, 2014 Fulltext: PDF link on intranet only
  • The Wheat Black Jack: Advances towards sequencing the 21 chromosomes of bread wheat
    Choulet, F., Caccamo, M., Wright, J., Alaux, M., Šimková, H., Šafář, J., Leroy, P., Doležel, J., Rogers, J., Eversole, K., Feuillet, C.
    Fulltext: PDF link on intranet only
  • Computational identification and comparative analysis of miRNAs in wheat group 7 chromosomes
    Deng, P., Nie, X., Wang, L., Cui, L., Liu, P., Tong, W., Biradar, S.S., Edwards, D., Berkman, P., Šimková, H., Doležel, J., Luo, M., You, F., Batley, J., Fleury, D., Appels, R., Weining, S.
    PLANT MOLECULAR BIOLOGY REPORTER 32, 487-500, 2014 Fulltext: PDF link on intranet only
  • Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii
    Molnár, I., Kubaláková, M., Šimková, H., Farkas, A., Cseh, A., Megyeri, M., Vrána, J., Molnár-Láng, M., Doležel, J.
    THEORETICAL AND APPLIED GENETICS 127, 1091-1104, 2014 Fulltext: PDF link on intranet only
  • A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
    Mayer, K.F.X., Rogers, J., Doležel, J., Pozniak, C., Eversole, K., Feuillet, C., Gill, B., Friebe, B., Lukaszewski, A.J., Sourdille, P., Endo, T.R., Kubaláková, M., Číhalíková, J., Dubská, Z., Vrána, J., Šperková, R., Šimková, H., Febrer, M., Clissold, L., McLay, K., Singh, K., Chhuneja, P., Singh, N.K., Khurana, J., Akhunov, E., Choulet, F., Alberti, A., Barbe, V., Wincker, P., Kanamori, H., Kobayashi, F., Itoh, T., Matsumoto, T., Sakai, H., Tanaka, T., Wu, J.Z., Ogihara, Y., Handa, H., Maclachlan, P.R., Sharpe, A., Klassen, D., Edwards, D., Batley, J., Olsen, O.A., Sandve, S.R., Lien, S., Steuernagel, B., Wulff, B., Caccamo, M., Ayling, S., Ramirez-Gonzalez, R.H., Clavijo, B.J., Wright, J., Pfeifer, M., Spannagl, M., Martis, M.M., Mascher, M., Chapman, J., Poland, J.A., Scholz, U., Barry, K., Waugh, R., Rokhsar, D.S., Muehlbauer, G.J., Stein, N., Gundlach, H., Zytnicki, M., Jamilloux, V., Quesneville, H., Wicker, T., Faccioli, P., Colaiacovo, M., Stanca, A.M., Budak, H., Cattivelli, L., Glover, N., Pingault, L., Paux, E., Sharma, S., Appels, R., Bellgard, M., Chapman, B., Nussbaumer, T., Bader, K.C., Rimbert, H., Wang, S.C., Knox, R., Kilian, A., Alaux, M., Alfama, F., Couderc, L., Guilhot, N., Viseux, C., Loaec, M., Keller, B., Praud, S.
    SCIENCE 345(6194), 1251788, 2014 Fulltext: PDF link on intranet only
  • A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
    Ruperao, P., Chan, C.K., Azam, S., Karafiátová, M., Hayashi, S., Cížková, J., Saxena, R.K., Šimková, H., Song, C., Vrána, J., Chitikineni, A., Visendi, P., Gaur, P.M., Millán, T., Singh, K.B., Taran, B., Wang, J., Batley, J., Doležel, J., Varshney, R.K., Edwards, D.
    PLANT BIOTECHNOLOGY JOURNAL 12, 778-786, 2014 Fulltext: PDF link on intranet only
  • Ancient hybridizations among the ancestral genomes of bread wheat
    Marcussen, T., Sandve, S.R., Heier, L., Spannagl, M., Pfeifer, M., Rogers, J., Doležel, J., Pozniak, C., Eversole, K., Feuillet, C., Gill, B., Friebe, B., Lukaszewski, A.J., Sourdille, P., Endo, T.R., Kubaláková, M., Číhalíková, J., Dubská, Z., Vrána, J., Šperková, R., Šimková, H., Febrer, M., Clissold, L., McLay, K., Singh, K., Chhuneja, P., Singh, N.K., Khurana, J., Akhunov, E., Choulet, F., Alberti, A., Barbe, V., Wincker, P., Kanamori, H., Kobayashi, F., Itoh, T., Matsumoto, T., Sakai, H., Tanaka, T., Wu, J., Ogihara, Y., Handa, H., Maclachlan, P.R., Sharpe, A., Klassen, D., Edwards, D., Batley, J., Olsen, O.A., Sandve, S.R., Lien, S., Steuernagel, B., Wulff, B., Caccamo, M., Ayling, S., Ramirez-Gonzalez, R.H., Clavijo, B.J., Wright, J., Pfeifer, M., Spannagl, M., Martis, M.M., Mascher, M., Chapman, J., Poland, J.A., Scholz, U., Barry, K., Waugh, R., Rokhsar, D.S., Muehlbauer, G.J., Stein, N., Gundlach, H., Zytnicki, M., Jamilloux, V., Quesneville, H., Wicker, T., Faccioli, P., Colaiacovo, M., Stanca, A.M., Budak, H., Cattivelli, L., Glover, N., Pingault, L., Paux, E., Sharma, S., Appels, R., Bellgard, M., Chapman, B., Nussbaumer, T., Bader, K.C., Rimbert, H., Wang, S., Knox, R., Kilian, A., Alaux, M., Alfam, F., Couderc, L., Guilhot, N., Viseux, C., Loaec, M., Keller, B., Praud, S., Jakobsen, K.S., Wulff, B.B., Steuernagel, B., Mayer, K.F., Olsen, O.A.
    SCIENCE 345, 1250092, 2014 Fulltext: PDF link on intranet only