Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

Hana Šimková, Ph.D.

Position:

research project leader

Phone:

+420 585 238 715

Fax:

+420 585 238 704

E-mail:

simkovah

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31, CZ-783 71, Olomouc - Holice, Czech Republic

Room number:

206

Education

M.Sc., University of Agriculture, Brno (1989), Phytotechnics
Ph.D., Academy of Sciences of the Czech Republic, Prague (1997), Genetics

Professional Experience

1997 – 2000 Postdoctoral Fellow, Laboratory of Molecular Cytogentics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic
2001 – present Senior Scientist, Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany, Olomouc, Czech Republic
2006 – present Lecturer, Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Olomouc, Czech Republic

Recent Research Activities

Development of procedure for preparation of high-molecular-weight DNA from flow-sorted chromosomes
Optimization of procedure and construction of chromosome-specific BAC libraries
Development of procedure for multiple-displacement amplification of flow-sorted chromosomes
Map-based cloning of a Russian wheat aphid resistance gene
Construction of physical map and sequencing of wheat chromosome arm 7DS
Genome mapping in nanochannel arrays ("optical mapping")

All User Publications:

Number of publications: 76

2013

Dispersion and domestication shaped the genome of bread wheat

Berkman, P.J., Visendi, P., Lee, H.C., Stiller, J., Manoli, S., Lorenc, M.T., Lai, K., Batley, J., Fleury, D., Šimková, H., Kubaláková, M., Weining, S., Doležel, J., Edwards, D.
PLANT BIOTECHNOLOGY JOURNAL 11, 564-571, 2013 Fulltext: PDF link on intranet only
Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
BMC GENOMICS 14, 222, 2013 Fulltext: PDF link on intranet only
Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
PLoS ONE 8, e59542, 2013 Fulltext: PDF link on intranet only
Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers

Molnár, I., Šimková, H., Leverington-Waite, M., Goram, R., Cseh, A., Vrána, J., Farkas, A., Doležel, J., Molnár-Láng, M., Griffiths, S.
PLoS ONE 8, e70844, 2013 Fulltext: PDF link on intranet only
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

Wicker, T., Oberhaensli, S., Parlange, F., Buchmann, J.P., Shatalina, M., Roffler, S., Ben-David, R., Doležel, J., Šimková, H., Schulze-Lefert, P., Spanu, P.D., Bruggmann, R., Amselem, J., Quesneville, H., Ver Loren van Themaat, E., Paape, T., Shimizu, K.K., Keller, B.
NATURE GENETICS 45, 1092-1096, 2013 Fulltext: PDF link on intranet only
A physical map of the short arm of wheat chromosome 1A

Breen, J., Wicker, T., Shatalina, M., Frenkel, Z., Bertin, I., Philippe, R., Spielmeyer, W., Šimková, H., Šafář, J., Cattonaro, F., Scalabrin, S., Magni, F., Vautrin, S., Berges, H., International Wheat Genome Sequencing Consortium, Paux, E., Fahima, T., Doležel, J., Korol, A., Feuillet, C., Keller, B.
PLoS ONE 8, e80272, 2013 Fulltext: PDF link on intranet only
Flow sorting and sequencing meadow fescue chromosome 4F

Kopecký, D., Martis, M., Číhalíková, J., Hřibová, E., Vrána, J., Bartoš, J., Kopecká, J., Cattonaro, F., Stočes, Š., Novák, P., Neumann, P., Macas, J., Šimková, H., Studer, B., Asp, T., Baird, J.H., Navrátil, P., Karafiátová, M., Kubaláková, M., Šafář, J., Mayer, K., Doležel, J.
PLANT PHYSIOLOGY 163, 1323-1337, 2013 Fulltext: PDF link on intranet only
The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution

Raats, D., Frenkel, Z., Krugman, T., Dodek, I., Sela, H., Šimková, H., Magni, F., Cattonaro, F., Vautrin, S., Bergès, H., Wicker, T., Keller, B., Leroy, P., Philippe, R., Paux, E., Doležel, J., Feuillet, C., Korol, A., Fahima, T.
GENOME BIOLOGY 14, R138, 2013 Fulltext: PDF link on intranet only

2012

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

Hernandez, P., Martis, M., Dorado, G., Pfeifer, M., Gálvez, S., Schaaf, S., Jouve, N., Šimková, H., Valárik, M., Doležel, J., Mayer, K.F.X.
PLANT JOURNAL 69, 377–386, 2012 Fulltext: PDF link on intranet only
Sequence composition and gene content of the short arm of rye (Secale cereale) chromosome 1

Fluch, S., Kopecky, D., Burg, K., Šimková, H., Taudien, S., Petzold, A., Kubaláková, M., Platzer, M., Berenyi, M., Krainer, S., Doležel, J., Lelley, T.
PLoS ONE 7(2), e30784, 2012 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, Ph.D.

2013

2012

Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany AS CR

Profile

Hana Šimková, Ph.D.

2013

2012

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR