Centre of Plant Structural and Functional Genomics | of the Institute of Experimental Botany AS CR

RNDr. Jan Šafář, Ph.D.

Position:

research project leader

Phone:

+420 585 238 710

Fax:

+420 585 238 704

E-mail:

safar

ueb [dot] cas [dot] cz

Address:

Šlechtitelů 31 783 71 Olomouc - Holice

Room number:

204

Academic degrees Appointments

2009 – present

Scientist, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic

2004 – 2008

Posdoctoral Fellow, Laboratory of Molecular Cytogenetics and Cytometry, Institute of Experimental Botany, Olomouc, Czech Republic

Research interests

1999 – present

BAC library construction

2005 – present

physical genome mapping

M.Sc., Masaryk University, Olomouc (1999), Microbiology
Ph.D., Palacky University, Olomouc (2004), Botany

All User Publications:

Number of publications: 41

2014

Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec Z., Valárik M., Bartoš J., Šafář J.
BIOTECHNOLOGY ADVANCES 32, 200-214, 2014 Fulltext: PDF link on intranet only
Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec, Z., Valárik, M., Bartoš, J., Šafář, J.
BIOTECHNOLOGY ADVANCES 32, 200-214, 2014 Fulltext: PDF link on intranet only
The Wheat Black Jack: Advances towards sequencing the 21 chromosomes of bread wheat

Choulet, F., Caccamo, M., Wright, J., Alaux, M., Šimková, H., Šafář, J., Leroy, P., Doležel, J., Rogers, J., Eversole, K., Feuillet, C.
Fulltext: PDF link on intranet only
Structural and functional partitioning of bread wheat chromosome 3B

Choulet, F., Alberti, A., Theil, S., Glover, N., Barbe, V., Daron, J., Pingault, L., Sourdille, P., Couloux, A., Paux, E., Leroy, P., Mangenot, S., Guilhot, N., Le Gouis, J., Balfourier, F., Alaux, M., Jamilloux, V., Poulain, J., Durand, C., Bellec, A., Gaspin, C., Šafář, J., Doležel, J., Rogers, J., Vandepoele, K., Aury, JM., Mayer, K., Berges, H., Quesneville, H., Wincker, P., Feuillet, C.
SCIENCE 345(6194), 1249721, 2014 Fulltext: PDF link on intranet only
Expression response of duplicated metallothionein 3 gene to copper stress in Silene vulgaris ecotypes

Nevrtalova, E., Baloun, J., Hudzieczek, V., Cegan, R., Vyskot, B., Doležel, J., Šafář, J., Milde, D., Hobza, R.
PROTOPLASMA 251, 1427-1439, 2014 Fulltext: PDF link on intranet only
Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., van Oeveren, J., Doležel, J., Mayer, K.F.X., Stein, N., Schnurbusch, T.
PLANT JOURNAL 79, 334-347, 2014 Fulltext: PDF link on intranet only

2013

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Philippe, R., Paux, E., Bertin, I., Sourdille, P., Choulet, F., Laugier, C., Šimková, H., Šafář, J., Bellec, A., Vautrin, S., Frenkel, Z., Cattonaro, F., Magni, F., Scalabrin, S., Martis, M.M., Mayer, K.F.X., Korol, A., Bergès, H., Doležel, J., Feuillet, C.
GENOME BIOLOGY 14, R64, 2013 Fulltext: PDF link on intranet only
Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
PLoS ONE 8, e59542, 2013 Fulltext: PDF link on intranet only
A physical map of the short arm of wheat chromosome 1A

Breen, J., Wicker, T., Shatalina, M., Frenkel, Z., Bertin, I., Philippe, R., Spielmeyer, W., Šimková, H., Šafář, J., Cattonaro, F., Scalabrin, S., Magni, F., Vautrin, S., Berges, H., International Wheat Genome Sequencing Consortium, Paux, E., Fahima, T., Doležel, J., Korol, A., Feuillet, C., Keller, B.
PLoS ONE 8, e80272, 2013 Fulltext: PDF link on intranet only

2012

Genomic diversity in two related plant species with and without sex chromosomes - Silene latifolia and S. vulgaris

Cegan, R., Vyskot, B., Kejnovsky, E., Kubat, Z., Blavet, H., Šafář, J., Doležel, J., Blavet, N., Hobza, R.
PLoS ONE 7(2), e31898, 2012 Fulltext: PDF link on intranet only

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

Profile

RNDr. Jan Šafář, Ph.D.

2014

2013

2012

Centre of Plant Structural and Functional Genomics of the Institute of Experimental Botany AS CR

Profile

RNDr. Jan Šafář, Ph.D.

2014

2013

2012

Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR