Institute of Experimental Botany AS CR
We are Discovering the Plant World

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes

Garbus, I., Romero, J.R., Valárik, M., Vanžurová, H., Karafiátová, M., Cáccamo, M., Doležel, J., Tranquilli, G., Helguera, M., Echenique,V.
BMC GENOMICS 16 : 375 , 2015
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Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

Lucas, S.J., Akpınar, B.A., Šimková, H., Kubaláková, M., Doležel, J., Budak, H.
BMC GENOMICS 15 : 1080 , 2014
Keywords: Wheat genome, Chromosome sorting, Triticum aestivum, Genome zipper, Triticeae genome, Chromosome arm shotgun, Comparative grass genomics

SNP Discovery for mapping alien introgressions in wheat

Tiwari, V.K., Wang, S., Sehgal, S., Vrána, J., Friebe, B., Kubaláková, M., Chhuneja, P., Doležel, J., Akhunov, E., Kalia, B., Sabir, J., Gill, B.S.
BMC GENOMICS 15 : 273 , 2014
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Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
BMC GENOMICS 14 : 222 , 2013
Keywords: Wheat, Assembly, Scaffold, Mate-pair, MDA, Improvement

Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome

Blavet, N., Blavet, H., Čegan, R., Zemp, N., Zdanska, J., Janoušek, B., Hobza, R., Widmer, A.
BMC GENOMICS 13 : 226 , 2012
Keywords: BAC library, Pseudoautosomal region, PAR, Silene latifolia, Sex chromosome, Evolution

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

Luo, M.-Ch., Ma, Y., You, F. M., Anderson, O. D., Kopecký, D., Šimková, H., Šafář, J., Doležel, J., Gill, B., McGuire, P., Dvořák, J.
BMC GENOMICS 11 : 122 , 2010
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Development and mapping of DArT markers within the Festuca - Lolium complex

Kopecký, D., Bartoš, J., Lukaszewski, A.J., Baird, J.H., Černoch, V., Kölliker, R., Rognli, O.A., Blois, H., Caig, V., Lübberstedt, T., Studer, B., Shaw, P., Doležel, J., Kilian, A.
BMC GENOMICS 10 : 473 , 2009
Keywords: Festuca, Lolium, DArT markers, genetic mapping

A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS).

Šimková, H., Šafář, J., Suchánková, P., Kovářová, P., Bartoš, J., Kubaláková, M., Janda, J., Číhalíková, J., Mago, R., Lelley, T., Doležel, J.
BMC GENOMICS 9 : 23 , 2008
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Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

Šimková, H., Svensson, J.T., Condamine, P., Hřibová, E., Suchánková, P., Bhat, P.R., Bartoš, J., Šafář, J., Close, T.J., Doležel, J.
BMC GENOMICS 9 : , 2008
Keywords: WHOLE-GENOME AMPLIFICATION; SINGLE-NUCLEOTIDE POLYMORPHISM; TRITICUM-AESTIVUM L.; BREAD WHEAT; DISPLACEMENT AMPLIFICATION; MITOTIC CHROMOSOMES; HIGH-THROUGHPUT; VICIA-FABA; SAMPLES; MAP

Formin homology 2 domains occur in multiple contexts in angiosperms

Cvrčková, F.; Novotný, M.; Pícková, Denisa; Žárský, Viktor
BMC GENOMICS 5 [44] : 1-18 , 2004
Keywords: Formin; angiosperms; Arabidopsis