Ústav experimentální botaniky AV ČR, v. v. i.
poznáváme svět rostlin

A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B

Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Šafář, J., Šimková, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Doležel, J., Nasuda, S., Matsumoto, T., Handa, H.
BMC GENOMICS 16 : 595 , 2015
Klíčová slova: Centromere, Chromosomal rearrangement, Chromosome 6B, DNA marker, Gene order, Nucleolus organizer region, BAC physical map, RH map, Synteny, Wheat

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

Akpinar, B.A., Magni, F., Yuce, M., Lucas, S.J., Šimková, H., Šafář, J., Vautrin, S., Bergès, H., Cattonaro, F., Doležel. J., Budak, H.
BMC GENOMICS 16 : 453 , 2015
Klíčová slova: Triticum aestivum, 5DS, Hexaploid wheat, Physical mapping, Gene space, Grass evolution

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes

Garbus, I., Romero, J.R., Valárik, M., Vanžurová, H., Karafiátová, M., Cáccamo, M., Doležel, J., Tranquilli, G., Helguera, M., Echenique,V.
BMC GENOMICS 16 : 375 , 2015
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Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

Lucas, S.J., Akpınar, B.A., Šimková, H., Kubaláková, M., Doležel, J., Budak, H.
BMC GENOMICS 15 : 1080 , 2014
Klíčová slova: Wheat genome, Chromosome sorting, Triticum aestivum, Genome zipper, Triticeae genome, Chromosome arm shotgun, Comparative grass genomics

SNP Discovery for mapping alien introgressions in wheat

Tiwari, V.K., Wang, S., Sehgal, S., Vrána, J., Friebe, B., Kubaláková, M., Chhuneja, P., Doležel, J., Akhunov, E., Kalia, B., Sabir, J., Gill, B.S.
BMC GENOMICS 15 : 273 , 2014
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Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
BMC GENOMICS 14 : 222 , 2013
Klíčová slova: Wheat, Assembly, Scaffold, Mate-pair, MDA, Improvement

Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome

Blavet, N., Blavet, H., Čegan, R., Zemp, N., Zdanska, J., Janoušek, B., Hobza, R., Widmer, A.
BMC GENOMICS 13 : 226 , 2012
Klíčová slova: BAC library, Pseudoautosomal region, PAR, Silene latifolia, Sex chromosome, Evolution

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species

Luo, M.-Ch., Ma, Y., You, F. M., Anderson, O. D., Kopecký, D., Šimková, H., Šafář, J., Doležel, J., Gill, B., McGuire, P., Dvořák, J.
BMC GENOMICS 11 : 122 , 2010
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Development and mapping of DArT markers within the Festuca - Lolium complex

Kopecký, D., Bartoš, J., Lukaszewski, A.J., Baird, J.H., Černoch, V., Kölliker, R., Rognli, O.A., Blois, H., Caig, V., Lübberstedt, T., Studer, B., Shaw, P., Doležel, J., Kilian, A.
BMC GENOMICS 10 : 473 , 2009
Klíčová slova: Festuca, Lolium, DArT markers, genetic mapping

A novel resource for genomics of Triticeae: BAC library specific for the short arm of rye (Secale cereale L.) chromosome 1R (1RS).

Šimková, H., Šafář, J., Suchánková, P., Kovářová, P., Bartoš, J., Kubaláková, M., Janda, J., Číhalíková, J., Mago, R., Lelley, T., Doležel, J.
BMC GENOMICS 9 : 23 , 2008
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