The European bitterling - endangered or non-native species in central Europe?
Investigator: doc. RNDr. Martin Reichard, Ph.D.

Genetic consequences of population decline in Eurasian otter (Lutra lutra) populations in the Czech and Slovak Republics
Investigator: Mgr. Petra Hájková, Ph.D.

Population and genetic structure of brown trout and grayling as groundwork for efficient management of fisheries in salmonid waters
Co-investigator: Ing. Karel Halačka, CSc.

Evolutionary ecological analysis of biological systems: research centrum for PhD studies
Investigator: Ing. Pavel Jurajda, Dr.

Genetic structure of the freshwater pearl mussel in the Czech Republic (2009-2010)
Investigator: doc. Mgr. et Mgr. Josef Bryja, Ph.D.

Utilization of genetic resources for effective corservation of endangered species (2010-2012)
Investigator: doc. Mgr. et Mgr. Josef Bryja, Ph.D.

Molecular biodiversity inventory of the ichthyofauna of the Czech Republic
Investigator: Mgr. Jan Mendel, Ph.D.

Models for assesing and forecasting the impact of environmental key pollutants on marine and freshwater ecosystems and biodiversity
Co-investigator: Ing. Pavel Jurajda, Dr.

Rodents as important factor influencing forest regeneration
Investigator: RNDr. Miloslav Homolka, CSc.

Science for all senses (2012-2014)
Investigator: Mgr. Anna Bryjová

Next-generation technologies in evolutionary genetics
Investigator: doc. Mgr. et Mgr. Josef Bryja, Ph.D.

PROVAZ: PROpojení Vzdělávání A nových přístupů v Zoologicko-ekologickém výzkumu - od teorie k praxi
Investigator: doc. Mgr. et Mgr. Josef Bryja, Ph.D.

TTM Project
Co-investigator: Ing. Miroslav Čapek, CSc.

Conservation genetics of selected vertebrates in the Western Balkans (2008-2009)
Investigator: doc. Mgr. et Mgr. Josef Bryja, Ph.D.

Ichtyoparasitology Research Center
Co-investigator: Ing. Pavel Jurajda, Dr.