simkovah | Ústav experimentální botaniky AV ČR, v. v. i.

Ing. Hana Šimková, CSc.

Email: simkovah@ueb.cas.cz
Tel.: +420 585 238 715
Fax: +420 585 205 853

Adresa:
Šlechtitelů 31, 783 71, Olomouc - Holice, Česká republika
Místnost č.: 206

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Hana Šimková CS

Pracovní zařazení:

vědecký pracovník

Pracovní skupina:

Centrum strukturní a funkční genomiky rostlin

Publikace:

Počet publikací: 85

2014

Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus

Mago, R., Tabe, L., Vautrin, S., Šimková, H., Kubaláková, M., Upadhyaya, N., Berges, H., Kong, X., Breen, J., Doležel, J., Appels, R., Ellis, J.G., Spielmeyer, W.
BMC PLANT BIOLOGY 14 379 2014 Fulltext: PDF link pouze na intranetu
Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

Lucas, S.J., Akpınar, B.A., Šimková, H., Kubaláková, M., Doležel, J., Budak, H.
BMC GENOMICS 15 1080 2014 Fulltext: PDF link pouze na intranetu

2013

Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat

Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Šimková, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Doležel, J., Gill, B.S.
PLANT PHYSIOLOGY 161 252–265 2013 Fulltext: PDF link pouze na intranetu
Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Shatalina, M., Wicker, T., Buchmann, J.P., Oberhaensli, S., Šimková, H., Doležel, J., Keller, B.
PLANT BIOTECHNOLOGY JOURNAL 11 23-32 2013 Fulltext: PDF link pouze na intranetu
Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
PLoS ONE 8 e59542 2013 Fulltext: PDF link pouze na intranetu
A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus

Michalak de Jimenez, M.K., Bassi, F.M., Ghavami, F., Simons, K., Dizon, R., Seetan, R.I., Alnemer, L.M., Denton, A.M., Doğramacı, M., Šimková, H., Doležel, J., Seth, K., Luo, M.-C., Dvorak, J., Gu, Y.Q., Kianian, S.F.
FUNCTIONAL & INTEGRATIVE GENOMICS 13 19-32 2013 Fulltext: PDF link pouze na intranetu
Development of COS-SNP and HRM markers for high-throughput and reliable haplotype-based detection of Lr14a in durum wheat (Triticum durum Desf.)

Terracciano, I., Maccaferri, M., Bassi, F., Mantovani, P., Sanguineti, M.C., Salvi, S., Šimková, H., Doležel, J., Massi, A., Ammar, K., Kolmer, J., Tuberosa, R.
THEORETICAL AND APPLIED GENETICS 126 1077-1101 2013 Fulltext: PDF link pouze na intranetu
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

Luo, M.-C., Gu, Y.Q., You, F.M., Deal, K.R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C.M., Zhang, Y., McGuire, P.E., Pasternak, S., Stein, J.C., Ware, D., Kramer, M., McCombie, W.R., Kianian, S.F., Martis, M.M., Mayer, K.F.X., Sehgal, S.K., Li, W., Gill, B.S., Bevan, M.W., Šimková, H., Doležel, J., Weining, S., Lazo, G.R., Anderson, O.D., Dvorak, J.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 7940-7945 2013 Fulltext: PDF link pouze na intranetu
Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat

Belova, T., Zhan, B., Wright, J., Caccamo, M., Asp, T., Šimková, H., Kent, M., Bendixen, C., Panitz, F., Lien, S., Doležel, J., Olsen, O.-A., Sandve, S.R.
BMC GENOMICS 14 222 2013 Fulltext: PDF link pouze na intranetu
Dispersion and domestication shaped the genome of bread wheat

Berkman, P.J., Visendi, P., Lee, H.C., Stiller, J., Manoli, S., Lorenc, M.T., Lai, K., Batley, J., Fleury, D., Šimková, H., Kubaláková, M., Weining, S., Doležel, J., Edwards, D.
PLANT BIOTECHNOLOGY JOURNAL 11 564-571 2013 Fulltext: PDF link pouze na intranetu

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	Mravec J., et al., Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter, NATURE
	Paciorek, et al., Auxin inhibits endocytosis and promotes its own efflux from cells, NATURE
	Honys D, et al., Cytoskeleton-associated large RNP complexes in tobacco male gametopyte (EPPs) are associated with ribosomes and are involved in protein synthesis, processing and localisation., JOURNAL OF PROTEOME RESEARCH
	Barbez E., et al., A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants, NATURE
	Muller K., et al., Transcription of atp1 is influenced by both genomic configuration and nuclear background in the highly rearranged mitochondrial genomes of Silene vulgaris., PLANT MOLECULAR BIOLOGY

Ústav experimentální botaniky AV ČR, v. v. i.
poznáváme svět rostlin