The research group mainly focuses on 3D image acquisition and image processing of microscopic and macroscopic biological features, for example, cell ultrastructures, cells, tissues, organs or entire organisms. In addition, new evaluation and computer methods are designed upon specific requirements.
The main areas of the research are:
- 3D image analysis, stereology, spatial statistics, 3D reconstruction
- First- and second-order stereological methods: study of variance of the methods, new methods and software development, consulting and tutorials
- 3D microscopy of biological specimens:
- confocal and two-photon excitation microscopy: data processing and analysis, application of modern fluorescence approaches and recent two-photon excitation trends, calibration services, deconvolution, service and maintenance of Leica confocal microscopes including pulse near-infrared laser, consulting and tutorials
- optical projection tomography, fluorescence and transmitted light microscopy of specimens at the submacroscopic level, optical clearing of specimens
The instruments are adopted for a wide range of projects, for example, bird brain anatomy, conduction system of the heart, capillary system of the human placenta, rat muscles and brain, extracellular matrix proteins – collagen and elastin, architecture of the spruce needle and its cells, for instance, structure of the nucleus and of the endoplasmic reticulum.
Projects
Using high-resolution imaging and geometric morphology, we study the relation between brain anatomy and capability of flying in birds.
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We use 3D imaging and optical mapping to analyze the cardiac conduction system and its development in the mouse.
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On the level of chloroplast ultrastructure, we investigate the impact of elevated carbon dioxide concentration and irradiance on structure and performance of forest tree photosynthetic apparatus.
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We study capillary bed using stereology and 3D image analysis.
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Achievements
Publications
Vyklický, Vojtěch - Krausová, Barbora - Černý, Jiří - Balík, Aleš - Zápotocký, Martin - Novotný, M. - Lichnerová, Katarina - Smejkalová, Tereza - Kaniaková, Martina - Kořínek, Miloslav - Petrovič, Miloš - Kačer, P. - Horák, Martin - Chodounská, Hana - Vyklický ml., Ladislav
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Block of NMDA receptor channels by endogenous neurosteroids: implications for the agonist induced conformational states of the channel vestibule
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Scientific Reports. 2015, Vol. 5, Jun 18, p. 10935
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IF = 5.578
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doi
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Roubalová, Lenka - Vošahlíková, Miroslava - Brejchová, Jana - Sýkora, Jan - Rudajev, Vladimír - Svoboda, Petr
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High Efficacy but Low Potency of delta-Opioid Receptor-G Protein Coupling in Brij-58-Treated, Low-Density Plasma Membrane Fragments
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PLoS ONE. 2015, Vol. 10, 8, e0135664
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IF = 3.234
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doi
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Lišková, Jana - Babchenko, Oleg - Varga, Marián - Kromka, Alexander - Hadraba, Daniel - Švindrych, Zdeněk - Burdíková, Zuzana - Bačáková, Lucie
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Osteogenic cell differentiation on H-terminated and O-terminated nanocrystalline diamond films
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International Journal of Nanomedicine. 2015, Vol. 10, 2015, p. 869-884
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IF = 4.383
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doi
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Kubínová, Lucie - Janáček, Jiří
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Confocal stereology: an efficient tool for measurement of microscopic structures
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Cell and Tissue Research. 2015, Vol. 360, 1, p. 13-28
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IF = 3.565
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doi
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Cvetko, E. - Čapek, Martin - Damjanovska, M. - Reina, M. A. - Eržen, I. - Stopar-Pintarič, T.
The utility of three-dimensional optical projection tomography in nerve injection injury imaging
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Anaesthesia. 2015, Vol. 70, 8, p. 939-947
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IF = 3.382
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