safar | Institute of Experimental Botany AS CR

Position:

scientist

Workgroup:

Centre of Plant Structural and Functional Genomics

Publications:

Number of publications: 44

2015

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

Akpinar, B.A., Magni, F., Yuce, M., Lucas, S.J., Šimková, H., Šafář, J., Vautrin, S., Bergès, H., Cattonaro, F., Doležel. J., Budak, H.
BMC GENOMICS 16 453 2015 Fulltext: PDF link on intranet only
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B

Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Šafář, J., Šimková, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Doležel, J., Nasuda, S., Matsumoto, T., Handa, H.
BMC GENOMICS 16 595 2015 Fulltext: PDF link on intranet only

2014

Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec Z., Valárik M., Bartoš J., Šafář J.
BIOTECHNOLOGY ADVANCES 32 200-214 2014 Fulltext: PDF link on intranet only
Can a late bloomer become an early bird? Tools for flowering time adjustment

Milec, Z., Valárik, M., Bartoš, J., Šafář, J.
BIOTECHNOLOGY ADVANCES 32 200-214 2014 Fulltext: PDF link on intranet only
The Wheat Black Jack: Advances towards sequencing the 21 chromosomes of bread wheat

Choulet, F., Caccamo, M., Wright, J., Alaux, M., Šimková, H., Šafář, J., Leroy, P., Doležel, J., Rogers, J., Eversole, K., Feuillet, C.
Genomics of plant genetic resources 405-438 2014 Fulltext: PDF link on intranet only
Structural and functional partitioning of bread wheat chromosome 3B

Choulet, F., Alberti, A., Theil, S., Glover, N., Barbe, V., Daron, J., Pingault, L., Sourdille, P., Couloux, A., Paux, E., Leroy, P., Mangenot, S., Guilhot, N., Le Gouis, J., Balfourier, F., Alaux, M., Jamilloux, V., Poulain, J., Durand, C., Bellec, A., Gaspin, C., Šafář, J., Doležel, J., Rogers, J., Vandepoele, K., Aury, JM., Mayer, K., Berges, H., Quesneville, H., Wincker, P., Feuillet, C.
SCIENCE 345(6194) 1249721 2014 Fulltext: PDF link on intranet only
Expression response of duplicated metallothionein 3 gene to copper stress in Silene vulgaris ecotypes

Nevrtalova, E., Baloun, J., Hudzieczek, V., Cegan, R., Vyskot, B., Doležel, J., Šafář, J., Milde, D., Hobza, R.
PROTOPLASMA 251 1427-1439 2014 Fulltext: PDF link on intranet only
Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., van Oeveren, J., Doležel, J., Mayer, K.F.X., Stein, N., Schnurbusch, T.
PLANT JOURNAL 79 334-347 2014 Fulltext: PDF link on intranet only

2013

Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

Lucas, S.J., Akpınar, B.A., Kantar, M., Weinstein, Z., Aydınoglu, F., Šafář, J., Šimková, H., Frenkel, Z., Korol, A., Magni, F., Cattonaro, F., Vautrin, S., Bellec, A., Berges, H., Doležel, J., Budak, H.
PLoS ONE 8 e59542 2013 Fulltext: PDF link on intranet only
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

Philippe, R., Paux, E., Bertin, I., Sourdille, P., Choulet, F., Laugier, C., Šimková, H., Šafář, J., Bellec, A., Vautrin, S., Frenkel, Z., Cattonaro, F., Magni, F., Scalabrin, S., Martis, M.M., Mayer, K.F.X., Korol, A., Bergès, H., Doležel, J., Feuillet, C.
GENOME BIOLOGY 14 R64 2013 Fulltext: PDF link on intranet only

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	Antoniadi I., et al., Cell-Type-Specific Cytokinin Distribution within the Arabidopsis Primary Root Apex, PLANT CELL
	Zhang Ch., et al., Endosidin2 targets conserved exocyst complex subunit EXO70 to inhibit exocytosis, PNAS
	Bouguyon E., et al., Multiple mechanisms of nitrate sensing by Arabidopsis nitrate tranceptor NRT1.1, NATURE PLANTS
	Samanovic M.I., et al., Proteasomal Control of Cytokinin Synthesis Protects Mycobacterium tuberculosis against Nitric Oxide, MOLECULAR CELL
	Niemann M.C.E., et al., Arabidopsis ROCK1 transports UDP-GlcNAc/UDP-GalNAc and regulates ER protein quality control and cytokinin activity, PLANT BIOLOGY

Institute of Experimental Botany AS CR
We are Discovering the Plant World

Institute of Experimental Botany AS CR
We are Discovering the Plant World

RNDr. Jan Šafář, Ph.D.

Profile

Jan Šafář EN

2015

2014

2013