Intranet Čeština

Biomathematics

Biomathematics

The research group mainly focuses on 3D image acquisition and image processing of microscopic and macroscopic biological features, for example, cell ultrastructures, cells, tissues, organs or entire organisms. In addition, new evaluation and computer methods are designed upon specific requirements.

 

The main areas of the research are:

  • 3D image analysis, stereology, spatial statistics, 3D reconstruction
  • First- and second-order stereological methods: study of variance of the methods, new methods and software development, consulting and tutorials
  • 3D microscopy of biological specimens:
  1. confocal and two-photon excitation microscopy: data processing and analysis, application of modern fluorescence approaches and recent two-photon excitation trends, calibration services, deconvolution, service and maintenance of Leica confocal microscopes including pulse near-infrared laser, consulting and tutorials
  2. optical projection tomography, fluorescence and transmitted light microscopy of specimens at the submacroscopic level, optical clearing of specimens

           

The instruments are adopted for a wide range of projects, for example, bird brain anatomy, conduction system of the heart, capillary system of the human placenta, rat muscles and brain, extracellular matrix proteins – collagen and elastin, architecture of the spruce needle and its cells, for instance, structure of the nucleus and of the endoplasmic reticulum.

 

Laboratory of Biochemistry of Membrane Receptors

Projects

Achievements

Publications

Vyklický, Vojtěch - Krausová, Barbora - Černý, Jiří - Balík, Aleš - Zápotocký, Martin - Novotný, M. - Lichnerová, Katarina - Smejkalová, Tereza - Kaniaková, Martina - Kořínek, Miloslav - Petrovič, Miloš - Kačer, P. - Horák, Martin - Chodounská, Hana - Vyklický ml., Ladislav . Block of NMDA receptor channels by endogenous neurosteroids: implications for the agonist induced conformational states of the channel vestibule . Scientific Reports. 2015, Vol. 5, Jun 18, p. 10935 . IF = 5.578 [ASEP] [ doi ]
Roubalová, Lenka - Vošahlíková, Miroslava - Brejchová, Jana - Sýkora, Jan - Rudajev, Vladimír - Svoboda, Petr . High Efficacy but Low Potency of delta-Opioid Receptor-G Protein Coupling in Brij-58-Treated, Low-Density Plasma Membrane Fragments . PLoS ONE. 2015, Vol. 10, 8, e0135664 . IF = 3.234 [ASEP] [ doi ]
Lišková, Jana - Babchenko, Oleg - Varga, Marián - Kromka, Alexander - Hadraba, Daniel - Švindrych, Zdeněk - Burdíková, Zuzana - Bačáková, Lucie . Osteogenic cell differentiation on H-terminated and O-terminated nanocrystalline diamond films . International Journal of Nanomedicine. 2015, Vol. 10, 2015, p. 869-884 . IF = 4.383 [ASEP] [ doi ]
Kubínová, Lucie - Janáček, Jiří . Confocal stereology: an efficient tool for measurement of microscopic structures . Cell and Tissue Research. 2015, Vol. 360, 1, p. 13-28 . IF = 3.565 [ASEP] [ doi ]
Cvetko, E. - Čapek, Martin - Damjanovska, M. - Reina, M. A. - Eržen, I. - Stopar-Pintarič, T. The utility of three-dimensional optical projection tomography in nerve injection injury imaging . Anaesthesia. 2015, Vol. 70, 8, p. 939-947 . IF = 3.382 [ASEP] [ doi ]

Article photogallery

Contacts

Institute of Physiology CAS
Department of Biomathematics

Vídeňská 1083
14220 Prague 4
tel. +420 241 062 768
 

jiri.janacek@fgu.cas.cz

People

  RNDr. Jiří Janáček, Ph.D.
head of the department
  RNDr. Lucie Kubínová, CSc.
deputy head of the department
  Ing. Martin Čapek, Ph.D.
senior researcher
  RNDr. Radek Pelc, DPhil.
senior researcher
  RNDr. Barbora Radochová, Ph.D.
senior researcher
  Mgr. Zuzana Burdíková, Ph.D.
junior researcher
  Alexandr Čerňavský, Ph.D.
postdoctoral fellow
  Mgr. Daniel Hadraba
PhD student
  MUDr. Petr Karen, CSc.
senior researcher
  Ing. Kateřina Špačková
project manager
  Alena Dědičová
technician
 

 

Laboratory of Biochemistry of Membrane Receptors

  Doc. RNDr. Petr Svoboda, CSc.
senior researcher
  RNDr. Lenka Roubalová, Ph.D.
senior researcher
  RNDr. Hana Ujčíková, Ph.D.
senior researcher
  Ing. Miroslava Vošahlíková, Ph.D.
senior researcher
  Mgr. Jana Brejchová, Ph.D.
senior researcher
  Ing. Kateřina Stolařová
PhD student
  Bc. Kristina Cechová
undergraduate student
   
   
   
   
   
   
   

© 2014 INSTITUTE OF PHYSIOLOGY CAS