Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

2014

• Genome-wide analysis of repeat diversity across the family Musaceae
  Novák, P., Hřibová, E., Neumann, P., Koblížková, A., Doležel, J., Macas, J.
  PLoS ONE 9(6), e98918, 2014 Fulltext: PDF link on intranet only
• Structural and functional partitioning of bread wheat chromosome 3B
  Choulet, F., Alberti, A., Theil, S., Glover, N., Barbe, V., Daron, J., Pingault, L., Sourdille, P., Couloux, A., Paux, E., Leroy, P., Mangenot, S., Guilhot, N., Le Gouis, J., Balfourier, F., Alaux, M., Jamilloux, V., Poulain, J., Durand, C., Bellec, A., Gaspin, C., Šafář, J., Doležel, J., Rogers, J., Vandepoele, K., Aury, JM., Mayer, K., Berges, H., Quesneville, H., Wincker, P., Feuillet, C.
  SCIENCE 345(6194), 1249721, 2014 Fulltext: PDF link on intranet only
• Common wheat chromosome 5B composition analysis using low-coverage 454 sequencing
  Sergeeva, E.M., Afonnikov, D.A., Koltunova, M.K., Gusev, V.D., Miroshnichenko, L.A., Vrána, J., Kubaláková, M., Poncet, C., Sourdille, P., Feuillet, C., Doležel, J., Salina, E.A.
  THE PLANT GENOME 7(2), 1-16, 2014 Fulltext: PDF link on intranet only
• Multiple, concentration-dependent effects of sucrose, auxins and cytokinins in explant cultures of kale and tobacco
  Luštinec, J., Cvrčková, F., Čížková, J., Doležel, J., Kamínek, M., Žárský, V.
  ACTA PHYSIOLOGIAE PLANTARUM 36, 1981-1991, 2014 Fulltext: PDF link on intranet only
• Proteomic analysis of barley cell nuclei purified by flow sorting
  Petrovská, B., Jeřábková, H., Chamrád, I., Vrána, J., Lenobel, R., Uřinovská, J., Sebela, M., Doležel, J.
  CYTOGENETIC AND GENOME RESEARCH 143, 78-86, 2014 Fulltext: PDF link on intranet only
• A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies
  Ruperao, P., Chan, C.K., Azam, S., Karafiátová, M., Hayashi, S., Cížková, J., Saxena, R.K., Šimková, H., Song, C., Vrána, J., Chitikineni, A., Visendi, P., Gaur, P.M., Millán, T., Singh, K.B., Taran, B., Wang, J., Batley, J., Doležel, J., Varshney, R.K., Edwards, D.
  PLANT BIOTECHNOLOGY JOURNAL 12, 778-786, 2014 Fulltext: PDF link on intranet only
• Characterization of the HMA7 gene and transcriptomic analysis of candidate genes for copper tolerance in two Silene vulgaris ecotypes
  Baloun, J., Nevrtalova, E., Kovacova, V., Hudzieczek, V., Cegan, R., Vyskot, B., Hobza, R.
  JOURNAL OF PLANT PHYSIOLOGY 171, 1188-1196, 2014 Fulltext: PDF link on intranet only
• Identification of a novel retrotransposon with sex chromosome-specific distribution in Silene latifolia
  Kralova, T., Cegan, R., Kubat, Z., Vrána, J., Vyskot, B., Vogel, I., Kejnovsky, E., Hobza, R.
  CYTOGENETIC AND GENOME RESEARCH 143, 87-95, 2014 Fulltext: PDF link on intranet only
• Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome
  Kubat, Z., Zluvova, J., Vogel, I., Kovacova, V., Cermak, T., Cegan, R., Hobza, R., Vyskot, B., Kejnovsky E.
  NEW PHYTOLOGIST 202, 662-678, 2014 Fulltext: PDF link on intranet only
• The X chromosome is necessary for somatic development in the dioecious Silene latifolia: Cytogenetic and molecular evidence and sequencing of a haploid genome
  Soukupova, M., Nevrtalova, E., Čížková, J., Vogel, I., Cegan, R., Hobza, R., Vyskot, B.
  CYTOGENETIC AND GENOME RESEARCH 143, 96-103, 2014 Fulltext: PDF link on intranet only
• Molecular and Flow Cytometric Karyotype analysis in Agropyron cristatum
  Said M., Cabrera A., Vrána J., Číhalíková J., Doležel J.
  Fulltext: public PDF link
• Ancient hybridizations among the ancestral genomes of bread wheat
  Marcussen, T., Sandve, S.R., Heier, L., Spannagl, M., Pfeifer, M., Rogers, J., Doležel, J., Pozniak, C., Eversole, K., Feuillet, C., Gill, B., Friebe, B., Lukaszewski, A.J., Sourdille, P., Endo, T.R., Kubaláková, M., Číhalíková, J., Dubská, Z., Vrána, J., Šperková, R., Šimková, H., Febrer, M., Clissold, L., McLay, K., Singh, K., Chhuneja, P., Singh, N.K., Khurana, J., Akhunov, E., Choulet, F., Alberti, A., Barbe, V., Wincker, P., Kanamori, H., Kobayashi, F., Itoh, T., Matsumoto, T., Sakai, H., Tanaka, T., Wu, J., Ogihara, Y., Handa, H., Maclachlan, P.R., Sharpe, A., Klassen, D., Edwards, D., Batley, J., Olsen, O.A., Sandve, S.R., Lien, S., Steuernagel, B., Wulff, B., Caccamo, M., Ayling, S., Ramirez-Gonzalez, R.H., Clavijo, B.J., Wright, J., Pfeifer, M., Spannagl, M., Martis, M.M., Mascher, M., Chapman, J., Poland, J.A., Scholz, U., Barry, K., Waugh, R., Rokhsar, D.S., Muehlbauer, G.J., Stein, N., Gundlach, H., Zytnicki, M., Jamilloux, V., Quesneville, H., Wicker, T., Faccioli, P., Colaiacovo, M., Stanca, A.M., Budak, H., Cattivelli, L., Glover, N., Pingault, L., Paux, E., Sharma, S., Appels, R., Bellgard, M., Chapman, B., Nussbaumer, T., Bader, K.C., Rimbert, H., Wang, S., Knox, R., Kilian, A., Alaux, M., Alfam, F., Couderc, L., Guilhot, N., Viseux, C., Loaec, M., Keller, B., Praud, S., Jakobsen, K.S., Wulff, B.B., Steuernagel, B., Mayer, K.F., Olsen, O.A.
  SCIENCE 345, 1250092, 2014 Fulltext: PDF link on intranet only
• Expression response of duplicated metallothionein 3 gene to copper stress in Silene vulgaris ecotypes
  Nevrtalova, E., Baloun, J., Hudzieczek, V., Cegan, R., Vyskot, B., Doležel, J., Šafář, J., Milde, D., Hobza, R.
  PROTOPLASMA 251, 1427-1439, 2014 Fulltext: PDF link on intranet only
• Genome interplay in the grain transcriptome of hexaploid bread wheat
  Pfeifer, M., Kugler, K.G., Sandve, S.R., Zhan, B., Rudi, H., Hvidsten, T.R., Rogers, J., Doležel, J., Pozniak, C., Eversole, K., Feuillet, C., Gill, B., Friebe, B., Lukaszewski, A.J., Sourdille, P., Endo, T.R., Kubaláková, M., Číhalíková, J., Dubská, Z., Vrána, J., Šperková, R., Šimková, H., Febrer, M., Clissold, L., McLay, K., Singh, K., Chhuneja, P., Singh, N.K., Khurana, J., Akhunov, E., Choulet, F., Alberti, A., Barbe, V., Wincker, P., Kanamori, H., Kobayashi, F., Itoh, T., Matsumoto, T., Sakai, H., Tanaka, T., Wu, J., Ogihara, Y., Handa, H., Maclachlan, P.R., Sharpe, A., Klassen, D., Edwards, D., Batley, J., Olsen, O.A., Sandve, S.R., Lien, S., Steuernagel, B., Wulff, B., Caccamo, M., Ayling, S., Ramirez-Gonzalez, R.H., Clavijo, B.J., Wright, J., Pfeifer, M., Spannagl, M., Martis, M.M., Mascher, M., Chapman, J., Poland, J.A., Scholz, U., Barry, K., Waugh, R., Rokhsar, D.S., Muehlbauer, G.J., Stein, N., Gundlach, H., Zytnicki, M., Jamilloux, V., Quesneville, H., Wicker, T., Faccioli, P., Colaiacovo, M., Stanca, A.M., Budak, H., Cattivelli, L., Glover, N., Pingault, L., Paux, E., Sharma, S., Appels, R., Bellgard, M., Chapman, B., Nussbaumer, T., Bader, K.C., Rimbert, H., Wang, S., Knox, R., Kilian, A., Alaux, M., Alfam, F., Couderc, L., Guilhot, N., Viseux, C., Loaec, M., Keller, B., Praud, S., Mayer, K.F., Olsen, O.A.
  SCIENCE 345, 1250091, 2014 Fulltext: PDF link on intranet only
• Extensive pericentric rearrangements in the bread wheat (Triticum aestivum L.) genotype “Chinese Spring” revealed from chromosome shotgun sequence data
  Ma, J., Stiller, J., Wei, Y., Zheng, Y.L., Devos, K.M., Doležel, J., Liu, C.
  GENOME BIOLOGY AND EVOLUTION 6, 3039-3048, 2014 Fulltext: PDF link on intranet only
• Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides)
  Ouyang, S., Zhang, D., Han, J., Zhao, X., Cui, Y., Song, W., Huo, N., Liang, Y., Xie, J., Wang, Z., Wu, Q., Chen, Y.-X., Lu, P., Zhang, D.-Y., Wang, L., Sun, H., Yang, T., Keeble-Gagnere, G., Appels, R., Doležel, J., Ling, H.-Q., Luo, M., Gu, Y., Sun, Q., Liu, Z.
  PLoS ONE 9(6), e100160, 2014 Fulltext: PDF link on intranet only
• Transposable element junctions in marker development and genomic characterization of barley
  Mazaheri, M., Kianian, P.M.A., Mergoum, M., Valentini, G.L., Seetan, R., Pirseyedi, S.M., Kumar, A., Gu, Y.Q., Stein, N., Kubaláková, M., Doležel, J., Denton, A.M., Kianian, S.F.
  THE PLANT GENOME 7, 1-8, 2014 Fulltext: PDF link on intranet only
• Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A
  Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., van Oeveren, J., Doležel, J., Mayer, K.F.X., Stein, N., Schnurbusch, T.
  PLANT JOURNAL 79, 334-347, 2014 Fulltext: PDF link on intranet only
• Taxonomical classification and origin of Kamut® wheat
  Michalcová, V., Dušinský, R., Sabo, M., Al Beyroutiová, M., Hauptvogel, P., Ivaničová, Z., Švec, M.
  PLANT SYSTEMATICS AND EVOLUTION 300, 1749-1757, 2014 Fulltext: PDF link on intranet only
• Expression and epigenetic profile of protoplast cultures (Cucumis sativus L.)
  Cápal, P., Ondřej, V.
  IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY 50, 789-794, 2014 Fulltext: PDF link on intranet only