Intranet Čeština

Biomathematics

Biomathematics

The research group mainly focuses on 3D image acquisition and image processing of microscopic and macroscopic biological features, for example, cell ultrastructures, cells, tissues, organs or entire organisms. In addition, new evaluation and computer methods are designed upon specific requirements.

 

The main areas of the research are:

  • 3D image analysis, stereology, spatial statistics, 3D reconstruction
  • First- and second-order stereological methods: study of variance of the methods, new methods and software development, consulting and tutorials
  • 3D microscopy of biological specimens:
  1. confocal and two-photon excitation microscopy: data processing and analysis, application of modern fluorescence approaches and recent two-photon excitation trends, calibration services, deconvolution, service and maintenance of Leica confocal microscopes including pulse near-infrared laser, consulting and tutorials
  2. optical projection tomography, fluorescence and transmitted light microscopy of specimens at the submacroscopic level, optical clearing of specimens

           

The instruments are adopted for a wide range of projects, for example, bird brain anatomy, conduction system of the heart, capillary system of the human placenta, rat muscles and brain, extracellular matrix proteins – collagen and elastin, architecture of the spruce needle and its cells, for instance, structure of the nucleus and of the endoplasmic reticulum.

 

Laboratory of Biochemistry of Membrane Receptors

Projects

Achievements

International poster award (Innsbruck 2016)

Contribution by David Habart from Institute of Clinical & Experimental Medicine (IKEM) on Langerhans islets‘ volumes measured by Barbora Radochova using our Fakir probe method and presented at the 6th European Pancreas and Islet Transplant Association (EPITA) & 35th AIDPIT Workshop (2016) received the AIDPIT & EPITA poster award. More

Publications

Vošahlíková, Miroslava - Svoboda, Petr . Lithium - therapeutic tool endowed with multiple beneficiary effects caused by multiple mechanisms . Acta Neurobiologiae Experimentalis. 2016, roč. 76, 1, p. 1-19 . IF = 1.708 [ASEP]
Tonar, Z. - Tomášek, P. - Loskot, P. - Janáček, Jiří - Králíčková, M. - Witter, K. Vasa vasorum in the tunica media and tunica adventitia of the porcine aorta . Annals of Anatomy-Anatomischer Anzeiger. 2016, roč. 205, 2016, p. 22-36 . IF = 1.308 [ASEP] [ doi ]
Sládková, J. - Spáčilová, J. - Čapek, Martin - Tesařová, M. - Hansíková, H. - Honzík, T. - Martínek, J. - Zámečník, J. - Kostková, O. - Zeman, J. Analysis of Mitochondrial Network Morphology in Cultured Myoblasts from Patients with Mitochondrial Disorders . Ultrastructural Pathology. 2015, Vol. 39, 5, p. 340-350 . IF = 0.828 [ASEP] [ doi ]
Jirák, D. - Janáček, Jiří - Kear, B. P. A combined MR and CT study for precise quantitative analysis of the avian brain . Scientific Reports. 2015, Vol. 5, Oct 30, p. 16002 . IF = 5.228 [ASEP] [ doi ]
Roubalová, Lenka - Vošahlíková, Miroslava - Brejchová, Jana - Sýkora, Jan - Rudajev, Vladimír - Svoboda, Petr . High Efficacy but Low Potency of delta-Opioid Receptor-G Protein Coupling in Brij-58-Treated, Low-Density Plasma Membrane Fragments . PLoS ONE. 2015, Vol. 10, 8, e0135664 . IF = 3.057 [ASEP] [ doi ]

Article photogallery

Contacts

Institute of Physiology CAS
Department of Biomathematics

Vídeňská 1083
14220 Prague 4
tel. +420 241 062 768
 

jiri.janacek@fgu.cas.cz

People

  RNDr. Jiří Janáček, PhD.
Head of department
  RNDr. Lucie Kubínová, CSc.
Deputy head of department
  Ing. Martin Čapek, PhD.
Senior researcher (part-time)
  RNDr. Radek Pelc, DPhil.(Oxon)
Senior researcher
  RNDr. Barbora Radochová, PhD.
Senior researcher
  Alexandr Čerňavský, PhD.
Postdoctoral researcher
  Mgr. Daniel Hadraba
PhD student
  MUDr. Petr Karen, CSc.
Senior researcher (part-time)
  Ing. Kateřina Špačková
Project manager
  Alena Dědičová
Technician (part-time)
 

 

Laboratory of Biochemistry of Membrane Receptors

  Doc. RNDr. Petr Svoboda, CSc.
Group leader
  RNDr. Lenka Roubalová, PhD.
Senior researcher
  RNDr. Hana Ujčíková, PhD.
Senior researcher
  Ing. Miroslava Vošahlíková, PhD.
Senior researcher
  Mgr. Jana Brejchová, PhD.
Senior researcher
  Ing. Kateřina Stolařová
PhD student
  Mgr. Martina Hloušková
PhD student
  Mgr. Kristina Cechová
PhD student
  Mgr. Michaela Czerneková
PhD student
   
   
   
   
   

© 2014 INSTITUTE OF PHYSIOLOGY CAS