2011

Dračínský M., Jansa P., Ahonen K., Buděšínský M.:
Tautomerism and the Protonation/Deprotonation of Isocytosine in Liquid- and Solid-States Studied by NMR Spectroscopy and Theoretical Calculations.
European Journal of Organic Chemistry. (8): 1544-1551, 2011.

Dračínský M., Pohl R., Slavětínská L., Hřebabecký H., Buděšínský M.:
The determination of sulfoxide configuration in five-membered rings using NMR spectroscopy and DFT calculations.
Tetrahedron Asymmetry. 22(18/19): 1797-1808, 2011.

Dračínský M., Pohl R., Slavětínská L., Janků J., Buděšínský M.:
The determination of sulfoxide configuration in six-membered rings using NMR specroscopy and DFT calculations.
Tetrahedron Asymmetry. 22(3): 256-366, 2011.

Haladová M., Mucaji P.,Buděšínský M., Vokáč K., Cvačka J., Grančai D., Eisenreichová E.:
Spirostanol saponins from the bulbs of Lilium candidum.
Chemistry of Natural Compounds. 46(6): 1004-1005, 2011.

Holec J., Rybáček J., Buděšínský M., Pospíšil L., Holý P.:
Electron-rich ligands with multiple tetrathiafulvalene arms.
Monatshefte fur Chemie. 142(8): 821-826, 2011.

Kóšiová I., Buděšínský M., Panova N., Rosenberg I.:
Synthesis of novel deoxynucleoside S-methylphosphonic acids using S-(diisopropylphosphonomethyl)isothiouronium tosylate, a new equivalent of mercaptomethylphosphonate.
Organic & Biomolecular Chemistry. 9(8): 2856-2560, 2011.

Králíková Š., Buděšínský M., Barvík I., Masojídková M., Točík Z., Rosenberg I.:
Synthesis and properties of ApA analogues with shortened phosphonate internucleotide linkage.
Nucleosides Nucleotides & Nucleic Acids. 30(7/9): 524-543, 2011.

Kvasnica M., Sarek J., Vlk M., Buděšínský M., Štěpánek O., Kubelka T., Plutnarová I.:
Study of stereoselectivity of reduction of 18-oxo des-E triterpenoids by sodium borohydride in the presence of cerium chloride.
Tetrahedron Asymmetry. 22(9): 1011-1020, 2011.

Liboska R., Snášel J., Barvík I., Buděšínský M., Pohl R., Točík Z., Páv O., Rejman D., Novák P., Rosenberg I.:
4'-Alkoxy oligodeoxynucleotides: a novel class of RNA mimics.
Organic & Biomolecular Chemistry. 9(24): 8261-8267, 2011.

Mojr V., Buděšínský M., Cibulka R., Kraus T.:
Alloxazine-cyclodextrin conjugates for organocatalytic enantioselective sulfoxidations.
Organic & Biomolecular Chemistry. 9(21): 7318-7326, 2011.

Páv O., Kóšiová I., Barvík I., Pohl R., Buděšínský M., Rosenberg I.:
Synthesis of oligoribonucleotides with phosphonate-modified linkages.
Organic & Biomolecular Chemistry. 9(17): 6120-6126, 2011.

Petrová M., Buděšínský M., Zborníková E., Fiedler P., Rosenberg I.:
A Ferrier-Type Allylic Rearrangement of 3´-Deoxy-3´,4´-didehydronucleosides Mediated by DMF Dimethyl Acetal: Direct Access to 4´-Alkoxy-2´,3´-didehydro-2´,3´-dideoxynucleosides.
Organic Letters. 13(16): 4200-4203, 2011.

Petrová M., Buděšínský M., Klepetářová B., Rosenberg I.:
5´-Epimeric 3´-deoxy-3´,4´-didehydronucleoside-5´-C-phosphonates: synthesis and structural assignment by NMR and X-ray analyses.
Tetrahedron. 67(23): 4227-4235, 2011.

Pícha J., Liboska R., Buděšínský M., Jiráček J., Pawelczak M., Mucha A.:
Unusual activity pattern of leucine aminopeptidase inhibitors based on phosphorus containing derivatives of methionine and norleucine.
Journal of Enzyme Inhibition and Medicinal Chemistry. 26(2): 155-161, 2011.

Pohl R., Dračínský M., Slavětínská L., Buděšínský M.:
The observed and calculated 1H and 13C chemical shifts of tertiary amines and their N-oxides.
Magnetic Resonance in Chemistry. 49(6): 320-327, 2011.

Poláková I., Buděšínský M., Točík Z., Rosenberg I.:
Tetrofuranose nucleoside phosphonic acids: Synthesis and properties.
Collection of Czechoslovak Chemical Communications. 76(5): 503-536, 2011.

Voignier J., Frey J., Kraus T., Buděšínský M., Cvačka J., Heitz V., Sauvage J. P.:
Transition-Metal-Complexed Cyclic [3]- and [4]Pseudorotaxanes Containing Rigid Ring-and-Filament Conjugates: Synthesis and Solution Studies.
Chemistry - A European Journal. 17(19): 5404-5414, 2011.

Ahone K. V., Lahtinen M. K., Valkonen A. M., Dračínský M., Kolehmainen E. T.:
Microwave assisted synthesis and solid-state characterization of lithocholyl amides of isomeric aminopyridines.
Steroids. 76(3): 261-268, 2011.

Baszczyňski O., Jansa P., Dračínský M., Klepetářová B., Holý A., Votruba I., De Clercq E., Balzarini J., Janeba Z.:
Synthesis and antiviral activity of N9-[3-fluoro-2-(phosphonomethoxy)propyl] analogues derived from N6-substituted adenines and 2,6-diaminopurines.
Bioorganic & Medicinal Chemistry. 19(7): 2114-2124, 2011.

Břehová P., Česnek M., Dračínský M., Holý A., Janeba Z.:
The efficient synthesis of 2-arylpyrimidine acyclic nucleoside phosphonates using Liebeskind-Srogl cross-coupling reaction.
Tetrahedron. 67(38): 7379-7386, 2011.

Čechová L., Jansa P., Šála M., Dračínský M., Holý A., Janeba Z.:
The optimized microwave-assisted decomposition of formamides and its synthetic utility in the amination reactions of purines.
Tetrahedron. 67(5): 866-871, 2011.

Číhalová S., Valero G., Schimer J., Humpl M., Dračínský M., Moyano A., Rois R., Veselý J.:
Highly enentioselective organocatalytic cascade reaction for the synthesis of piperidines and oxazolidines.
Tetrahedron. 67(46): 8942-8950, 2011.

Dejmek M., Hřebabecký H., Dračínský M., Neyts J., Leyssen P., Mertlíková-Kaiserová H., Nencka R.:
Conformationally locked nucleoside analogues based on the bridgehead substituted 7-oxonorbornane and their antiviral properties.
Collection of Czechoslovak Chemical Communications. 76(12): 1549-1566, 2011.

Dejmek M., Hřebabecký H., Šála M., Dračínský M., Nencka R.:
Microwave- assisted solvent-free Diels-Alder reaction – a fast and simple route to various 5,6-substituted norbornenes and polychlorinated norbornenes.
Synthesis. (24): 4077-4083, 2011.

Dračínský M., Benda L., Bouř P.:
Ab initio modeling of fused silica, crystal quartz, and water Raman spectra.
Chemical Physics Letters. 512: 54-59, 2011.

Dračínský M., Jansa P., Elbert T.:
Isotope exchange reactions of the hydrogen H-5 of selected pyrimidine derivatives and the preparation of tritium-labeled pyrimidines.
Collection of Czechoslovak Chemical Communications. 76(12): 1567-1577, 2011.

Dračínský M., Jansa P., Chocholoušová J., Vacek J., Kovačková S., Holý A.:
Mechanism of the Isotopic Exchange Reaction of the 5-H Hydrogen of Uracil Derivatives in Water and Nonprotic Solvents.
European Journal of Organic Chemistry. (4): 777-785, 2011.

Hopmann K. H., Ruud K., Pecul M., Kudelski A., Dračínský M., Bouř P.:
Explicit versus Implicit Solvent Modeling of Raman Optical Activity Spectra.
Journal of Physical Chemistry B. 115(14): 4128-4137, 2011.

Jansa P., Baszczyňski O., Dračínský M., Votruba I., Zídek Z., Bahador G., Stepan G., Cihlar T., Mackman R., Holý A., Janeba Z.:
A novel and efficient one-pot synthesis of symmetrical diamide (bis-amidate) prodrugs of acyclic nucleoside phosphonates and evaluation of their biological activities.
European Journal of Medicinal Chemistry. 46(9): 3748-3754, 2011.

Jansa P., Holý A., Dračínský M., Baszczyňski O., Česnek M., Janeba Z.:
Efficient and 'green' microwave-assisted synthesis of haloalkylphosphonates via the Michaelis-Arbuzov reaction.
Green Chemistry. 13(4): 882-888, 2011.

Jansa P., Špaček P., Votruba I., Břehová P., Dračínský M., Klepetářová B., Janeba Z.:
Efficient one-pot synthesis of polysubstituted 6-[(1H-1,2,3-triazol-l-yl)methyl]uracils through the "click" protocol.
Collection of Czechoslovak Chemical Communications. 76(9): 1121-1131, 2011.

Jansa P., Kolman V., Kostinová A., Dračínský M., Mertlíková-Kaiserová H., Janeba Z.:
Efficient synthesis and biological properties of the 2‘-trifluoromethyl analogues of acyclic nucleosides and acyclic nucleoside phosphonates.
Collection of Czechoslovak Chemical Communications. 76(10): 1187-1198, 2011.

Kovačková S., Dračínský M., Rejman D.:
The synthesis of piperidine nucleoside analogs-a comparison of several methods to access the introduction of nucleobases.
Tetrahedron. 67(7): 1485-1500, 2011.

Mařák D., Otmar M., Votruba I., Dračínský M., Krečmerová M.:
8-Aza-7,9-dideazaxanthine acyclic nucleoside phosphonate inhibitors of thymidine phosphorylase.
Bioorganic and Medicinal Chemistry Letters. 21(2): 652-654, 2011.

Otmar M., Dračínský M., Krečmerová M., Balzarini J., Andrei G., Snoeck R.:
Synthesis of O-2- and N-3-(2-phosphonomethoxy)ethyl derivatives of 6-phenyl- and 6-pyridinyl-5-azacytosine.
Heterocycles. 83(4): 797-813, 2011.

Rejman D., Pohl R., Dračínský M.:
The Synthesis and Conformation of Dihydroxypiperidinyl Derivates of Nucleobases as Novel Iminosugar Nucleoside Analogs.
European Journal of Organic Chemistry. (11): 2172-2187, 2011.

Šála M., De Palma A. M., Hřebabecký H., Dejmek M., Dračínský M., Leyssen P., Neyts J., Mertlíková-Kaiserová H., Nencka R.:
SAR studies of 9-norbornylpurines as Coxsackievirus B3 inhibitors.
Bioorganic and Medicinal Chemistry Letters. 21(14): 4271-4275, 2011.

Tichý T., Andrei G., Dračínský M., Holý A., Balzarini J., Snoeck R., Krečmerová M.:
New prodrugs of Adefovir and Cidofovir.
Bioorganic & Medicinal Chemistry. 19(11): 3527-3539, 2011.

Adriaenssens L., Severa L., Koval D., Císařová I., Belmonte M. M., Escudero-Adán E. C., Novotná P., Sázelová P., Vávra J., Pohl R., Šaman D., Urbanová M., Kašička V., Teplý F.:
[6]Saddlequat: a [6]helquat captured on its racemization pathway.
Chemical Science. 2(12): 2314-2320, 2011.

Balintová J., Pohl R., Horáková P., Vidláková P., Havran L., Fojta M., Hocek M.:
Anthraquinone as a Redox Label for DNA: Synthesis, Enzymatic Incorporation, and Electrochemistry of Anthraquinone-Modified Nucleosides, Nucleotides, and DNA.
Chemistry - A European Journal. 17: 14063-14073, 2011.

Bourderioux A., Nauš P., Perlíková P., Pohl R., Pichová I., Votruba I., Džubák P., Konečný P., Hajdúch M., Stray K. M., Wang T., Ray A. S., Feng J. Y., Birkuš G., Cihlar T., Hocek M.:
Synthesis and Significant Cytostatic Activity of 7-Hetaryl-7-deazaadenosines.
Journal of Medicinal Chemistry. 54(15): 5498-5507, 2011.

Čerňová M., Čerňa I., Pohl R., Hocek M.:
Regioselective Direct C-H Arylations of Protected Uracils. Synthesis of 5- and 6-Aryluracil Bases.
Journal of Organic Chemistry. 76(13): 5309-5319, 2011.

Kielkowski P., Pohl R., Hocek M.:
Synthesis of acetylene linked double-nucleobase nucleos(t)ide building blocks and polymerase construction of DNA containing cytosines in the major groove.
Journal of Organic Chemistry. 76(9): 3457-3462, 2011.

Kielkowski P., Macíčková-Cahová H., Pohl R., Hocek M.:
Transient and Switchable (Triethylsilyl)ethynyl Protection of DNA against Cleavage by Restriction Endonucleases.
Angewandte Chemie. International Edition in English. 50(37): 8727-8730, 2011.

Macíčková-Cahová H., Pohl R., Horáková P., Havran L., Špaček J., Fojta M., Hocek M.:
Alkylsulfanylphenyl derivatives of cytosine and 7-deazaadenine nucleosides, nucleotides and nucleoside triphosphates. Synthesis, polymerase incorporation to DNA and electrochemical study.
Chemistry - A European Journal. 17(21): 5833-5841, 2011.

Macíčková-Cahová H., Pohl R., Hocek M.:
Cleavage of Functionalized DNA Containing 5-Modified Pyrimidines by Type II Restriction Endonucleases.
Chembiochem. 12(3): 431-438, 2011.

Nauš P., Perlíková P., Pohl R., Hocek M.:
Sugar-modified derivatives of cytostatic 6-(het)aryl-7-deazapurine nucleosides: 2'-C-methylribonucleosides, arabinonucleosides and 2'-deoxy-2'-fluoroarabinonucleosides.
Collection of Czechoslovak Chemical Communications. 76(8): 957-988, 2011.

Perlíková P., Pohl R., Votruba I., Shih R., Birkuš G., Cihlář T., Hocek M.:
Phosphoramidate pronucleotides of cytostatic 6-aryl-7-deazapurine ribonucleosides.
Bioorganic & Medicinal Chemistry. 19(1): 229-242, 2011.

Pohl R., Rulíšek L., Rejman D.:
The stability and reactivity of activated acryloylcarbamates as reagents for the synthesis of N-1 substituted thymine and uracil - an NMR and DFT study.
Journal of Physical Organic Chemistry. 24(5): 423-430, 2011.

Rejman D., Rabatinová A., Pombinho A. R., Kovačková S., Pohl R., Zborníková E., Kolář M., Bogdanová K., Nyč O., Šanderová H., Látal T., Bartůněk P., Krásný L.:
Lipophosphonoxins: New Modular Molecular Structures with Significant Antibacterial Properties.
Journal of Medicinal Chemistry. 54(22): 7884-7898, 2011.

Sedláček O., Břehová P., Pohl R., Holý A., Janeba Z.:
The synthesis of the 8-C-substituted 2,6-diamino-9-[2-(phosphonomethoxy)ethyl]purine (PMEDAP) derivatives by diverse cross-coupling reactions.
Canadian Journal of Chemistry. 89(4): 488-489, 2011.

Mertlíková-Kaiserová H., Rumlová M., Tloušťová E., Procházková E., Holý A., Votruba I.:
Point mutations in human guanylate kinase account for acquired resistance to anticancer nucleotide analogue PMEG.
Biochemical Pharmacology. 82(2): 131-138, 2011.

Štefko M., Slavětínská L., Klepetářová B., Hocek M.:
General and Modular Synthesis of Isomeric 5-Substituted Pyridin-2-yl and 6-Substituted Pyridin-3-yl C-Ribonucleosides Bearing Diverse Alkyl, Aryl, Hetaryl, Amino, Carbamoyl, and Hydroxy Groups.
Journal of Organic Chemistry. 76(16): 6619-6635, 2011.

Čížková M., Kolivoška V., Císařová I., Šaman D., Pospíšil L., Teplý F.:
Nitrogen heteroaromatic cations by [2+2+2] cycloaddition.
Organic & Biomolecular Chemistry. 9(2): 450-462, 2011.

Dvořáková M., Valterová I., Šaman D., Vaněk T.:
Biotransformation of (1S)-2-Carene and (1S)-3-Carene by Picea abies Suspension Culture.
Molecules. 16(12): 10541-10555, 2011.

Krausová Z., Sehnal P., Bondzic B. P., Chercheja S., Eilbracht P., Stará I. G., Šaman D., Starý I.:
Helicene-Based Phosphite Ligands in Asymmetric Transition-Metal Catalysis: Exploring Rh-Catalyzed Hydroformylation and Ir-Catalyzed Allylic Amination.
European Journal of Organic Chemistry. (20/21): 3849-3857, 2011.

Šusteková J., Drašar P., Šaman D., Wimmer Z.:
Stigmasterol-Based Novel Low Molecular Weight/Mass Organic Gelators.
Molecules. 16(11): 9357-9367, 2011.

Monincová L., Slaninová J., Fučík V., Hovorka O., Voburka Z., Bednárová L., Maloň P., Štokrová J., Čeřovský V.:
Lasiocepsin, a novel cyclic antimicrobial peptide from the venom of eusocial bee Lasioglossum laticeps (Hymenoptera: Halictidae).
Amino Acids (online from Oct 29, 2011).

Pechar M., Pola R., Laga R., Ulbrich K., Bednárová L., Maloň P., Sieglová I., Král V., Fábry M., Vaněk O.:
Coiled coil peptides as universal linkers for the attachment of recombinant proteins to polymer therapeutics.
Biomacromolecules 12: 3645-3655 (2011).

Heyda J., Kožíšek M., Bednárová L., Thompson G., Konvalinka J., Vondrášek J., Jungwirth P.:
Urea and guanidinium induced denaturation of a Trp-cage miniprotein.
Journal of Physical Chemistry B 115: 8910-8924 (2011).

Čeřovský V., Slaninová J., Fučík V., Monincová L., Bednárová L., Maloň P., Štokrová J.:
Lucifensin, a novel insect defensin of medicinal maggots: synthesis and structural study.
Chembiochem 12: 1352-1361 (2011).

Monincová L., Cujová S., Slaninová J., Fučík V., Borovičková L., Hovorka O., Voburka Z., Bednárová L., Čeřovský V.:
Wild bee venom - rich source of antimicrobial peptides.
Conference proceedings: 22nd American Peptide Symposium, June 25-30, 2011.
Biopolymers 96: 483 (2011).

Mojzeš P., Palacký J., Bauerová V., Bednárová L.:
Ramanova mikrospektroskopie a mapování buněk a tkání [Raman microspectroscopy and cell's mapping].
Československý časopis pro fyziku 61: 178-184 (2011).

Wald T., Bednárová L., Osička R., Pachl P., Šulc M., Lyngstadaas S.P., Slabý I., Vondrášek J.:
Biophysical characterization of recombinant human ameloblastin.
European Journal of Oral Sciences 119 Suppl 1: 261-269 (2011).