simkovah | Institute of Experimental Botany AS CR

Ing. Hana Šimková, CSc.

Email: simkovah@ueb.cas.cz
Tel.: +420 585 238 715
Fax: +420 585 205 853

Address:
Šlechtitelů 31, 783 71, Olomouc - Holice, Česká republika
Room number: 206

Profile

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Hana Šimková EN

Position:

scientist

Workgroup:

Centre of Plant Structural and Functional Genomics

Publications:

Number of publications: 90

2016

An efficient approach to BAC based assembly of complex genomes

Visendi, P., Berkman, P.J., Hayashi, S., Golicz, A.A., Bayer, P.E., Ruperao, P., Hurgobin, B., Montenegro, J., Chan, C.-K.K., Staňková, H., Batley, J., Šimková, H., Doležel, J., Edwards, D.
PLANT METHODS 12 2 2016 Fulltext: PDF link on intranet only
The Enigma of progressively partial endoreplication: New insights provided by flow cytometry and next-generation sequencing

Hřibová, E., Holušová, K., Trávníček, P., Petrovská, B., Ponert, J., Šimková, H., Kubátová, B., Jersáková, J., Čurn, V., Suda, J., Doležel, J., Vrána, J.
GENOME BIOLOGY AND EVOLUTION 8 1996–2005 2016 Fulltext: PDF link on intranet only
BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

Staňková, H., Hastie, A.R., Chan, S., Vrána, J., Tulpová, Z., Kubaláková, M., Visendi, P., Hayashi, S., Luo, M., Batley, J., Edwards, D., Doležel, J., Šimková, H.
PLANT BIOTECHNOLOGY JOURNAL 14 1523-1531 2016 Fulltext: PDF link on intranet only
Construction of BAC libraries from flow-sorted chromosomes

Šafář, J., Šimková, H., Doležel, J.
Plant Cytogenetics: Methods and Protocols 135-149 2016 Fulltext: PDF link on intranet only

2015

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

Barghini, E., Natali, L., Giordani, T., Cossu, R.M., Scalabrin, S., Cattonaro, F., Šimková, H., Vrána, J., Doležel, J., Morgante, M., Cavallini, A.
DNA RESEARCH 22 91-100 2015 Fulltext: PDF link on intranet only
New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing

Helguera, M., Rivarola, M., Clavijo, B., Martis, M.M., Vanzetti, L.S., González, S., Garbus, I., Leroy, P., Šimková, H., Valárik, M., Caccamo, M., Doležel, J., Mayer, K.F.X., Feuillet, C., Tranquilli, G., Paniego, N., Echenique, V.
PLANT SCIENCE 233 200-212 2015 Fulltext: PDF link on intranet only
Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene

Staňková, H., Valárik, M., Lapitan, N.L.V., Berkman, P.J., Batley, J., Edwards, D., Luo. M.-Ch., Tulpová, Z., Kubaláková, M., Stein, N., Doležel, J., Šimková, H.
THEORETICAL AND APPLIED GENETICS 128 1373-1383 2015 Fulltext: PDF link on intranet only
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

Akpinar, B.A., Magni, F., Yuce, M., Lucas, S.J., Šimková, H., Šafář, J., Vautrin, S., Bergès, H., Cattonaro, F., Doležel. J., Budak, H.
BMC GENOMICS 16 453 2015 Fulltext: PDF link on intranet only
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B

Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Šafář, J., Šimková, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Doležel, J., Nasuda, S., Matsumoto, T., Handa, H.
BMC GENOMICS 16 595 2015 Fulltext: PDF link on intranet only
Genetic mapping of resistance to Diuraphis noxia (Kurdjumov) biotype 2 in wheat (Triticum aestivum L.) accession CI2401

Fazel-Najafabadi, M., Peng, J., Peairs, F.B., Šimková, H., Kilian, A., Lapitan, N.L.V.
EUPHYTICA 203 607-614 2015 Fulltext: PDF link on intranet only

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	A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome, SCIENCE 345: 1-11, 2014
	DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination, PNAS 2014: E3571-E3580, 2014
	A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein, PLANT CELL AND ENVIRONMENT 37: 670-683, 2014
	Proteasomal Control of Cytokinin Synthesis Protects Mycobacterium tuberculosis against Nitric Oxide, MOLECULAR CELL 57: 984-994, 2015
	DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism for the temperature- and gibberellin-dependent control of seed germination, PNAS Published online August 11, 2014: E3571-E3580, 2014

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