Čeština
EnglishBMC GENOMICS
The expansion of heterochromatin blocks in rye reflects the co-amplification of tandem repeats and adjacent transposable elements
Evtushenko, E.V., Levitsky, V.G., Elisafenko, E.A., Gunbin, K.V., Belousov, A.I., Šafář, J., Doležel, J., Vershinin, A.V.BMC GENOMICS 17 : 337 , 2016
Keywords: Tandem repeats, Transposable elements, Subtelomeric heterochromatin, Rye, Secale cereale, 1RS BAC library, 454 sequences, TE–tandem junctions, DNA motifs
Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods
Martin, G., Baurens, F.-C., Droc, G., Rouard, M., Cenci, A., Kilian, A., Hastie, A., Doležel, J., Aury, J.-M., Alberti, A., Carreel, F., D’Hont, A.BMC GENOMICS 17 : 243 , 2016
Keywords: Musa acuminata, Genome assembly, Bioinformatics tool, Paired-end sequences, GBS, Genome map
Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia
Blavet, N., Blavet, H., Muyle, A., Käfer, J., Cegan, R., Deschamps, C., Zemp, N., Mousset, S., Aubourg, S., Bergero, R., Charlesworth, D., Hobza, R., Widmer, A., Marais, G.A.B.BMC GENOMICS 16 : 546 , 2015
Keywords: Sex chromosomes, Sex-linked genes, Plant, BAC, RNA-seq, Gene loss, Y degeneration, Silene latifolia, Silene vulgaris
High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora
Wu Z.Q., Stone J.D., Štorchová H., Sloan D.B.BMC GENOMICS 16 : 938 , 2015
Keywords: antisense RNA; junk DNA; mtDNA; ORFs; plant mitochondrial genome; regulatory RNA; spurious transcription
Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes
Kumar, A., Seetan, R., Mergoum, M., Tiwari, V.K., Iqbal, M.J., Wang, Y., Al-Azzam, O., Šimková, H., Luo, M.C., Dvorak, J., Gu, Y.Q., Denton, A., Kilian, A., Lazo, G.R., Kianian, S.F.BMC GENOMICS 16 : 800 , 2015
Keywords: Aegilops tauschii, Deletion, Physical mapping, Radiation hybrid mapping, Sequence assembly, Wheat
A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B
Kobayashi, F., Wu, J., Kanamori, H., Tanaka, T., Katagiri, S., Karasawa, W., Kaneko, S., Watanabe, S., Sakaguchi, T., Hanawa, Y., Fujisawa, H., Kurita, K., Abe, C., Iehisa, J.C.M., Ohno, R., Šafář, J., Šimková, H., Mukai, Y., Hamada, M., Saito, M., Ishikawa, G., Katayose, Y., Endo, T.R., Takumi, S., Nakamura, T., Sato, K., Ogihara, Y., Hayakawa, K., Doležel, J., Nasuda, S., Matsumoto, T., Handa, H.BMC GENOMICS 16 : 595 , 2015
Keywords: Centromere, Chromosomal rearrangement, Chromosome 6B, DNA marker, Gene order, Nucleolus organizer region, BAC physical map, RH map, Synteny, Wheat
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
Akpinar, B.A., Magni, F., Yuce, M., Lucas, S.J., Šimková, H., Šafář, J., Vautrin, S., Bergès, H., Cattonaro, F., Doležel. J., Budak, H.BMC GENOMICS 16 : 453 , 2015
Keywords: Triticum aestivum, 5DS, Hexaploid wheat, Physical mapping, Gene space, Grass evolution
Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes
Garbus, I., Romero, J.R., Valárik, M., Vanžurová, H., Karafiátová, M., Cáccamo, M., Doležel, J., Tranquilli, G., Helguera, M., Echenique,V.BMC GENOMICS 16 : 375 , 2015
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Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
Lucas, S.J., Akpınar, B.A., Šimková, H., Kubaláková, M., Doležel, J., Budak, H.BMC GENOMICS 15 : 1080 , 2014
Keywords: Wheat genome, Chromosome sorting, Triticum aestivum, Genome zipper, Triticeae genome, Chromosome arm shotgun, Comparative grass genomics
SNP Discovery for mapping alien introgressions in wheat
Tiwari, V.K., Wang, S., Sehgal, S., Vrána, J., Friebe, B., Kubaláková, M., Chhuneja, P., Doležel, J., Akhunov, E., Kalia, B., Sabir, J., Gill, B.S.BMC GENOMICS 15 : 273 , 2014
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