Centre of Plant Structural and
Functional Genomics
of the Institute of Experimental Botany AS CR

2011

• Chromosome analysis and sorting using flow cytometry
  Doležel, J., Kubaláková, M., Číhalíková, J., Suchánková, P., Šimková, H.
  Fulltext: PDF link on intranet only
• Genetic mapping of DArT markers in the Festuca–Lolium complex and their use in freezing tolerance association analysis
  Bartoš, J., Sandve, S.R., Kölliker, R. Kopecký, D., Christelová, P., Stočes, Š., Østrem, L., Larsen, A., Kilian, A., Rognli, O-A, Doležel, J.
  THEORETICAL AND APPLIED GENETICS 122, 1133-1147, 2011 Fulltext: PDF link on intranet only
• Plant centromeric retrotransposons: a structural and cytogenetic perspective
  Neumann, P., Navrátilová, A., Koblížková, A., Kejnovský, E., Hřibová, E., Hobza, R., Widmer, A., Doležel, J., Macas, J.
  MOBILE DNA 2, 4, 2011 Fulltext: PDF link on intranet only
• The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny
  Hřibová, E., Čížková, J., Christelová, P., Taudien, S., de Langhe, E., Doležel, J.
  PLoS ONE 6(3), e17863, 2011 Fulltext: PDF link on intranet only
• A multi gene sequence-based phylogeny of the Musaceae (banana) family
  Christelová, P., Valárik, M., Hřibová, E., De Langhe, E., Doležel, J.
  BMC EVOLUTIONARY BIOLOGY 11, 103, 2011 Fulltext: PDF link on intranet only
• Unlocking the barley genome by chromosomal and comparative genomics
  Mayer, K.F.X., Martis, M., Hedley, P.E., Šimková, H., Liu, H., Morris, J.A., Steuernagel, B., Taudien, S., Roessner, S., Gundlach, H., Kubaláková, M., Suchánková, P.,Murat, F., Felder, M., Nussbaumer, T., Graner, A., Salse, J., Endo, T.R., Sakai, H., Tanaka, T., Itoh, T., Sato, K., Platzer, M., Matsumoto, T., Scholz, U., Doležel, J., Waugh, R., Stein, N.
  PLANT CELL 23, 1249-1263, 2011 Fulltext: PDF link on intranet only
• On the genome constitution and evolution of intermediate wheatgrass (Thinopyrum intermedium: Poaceae, Triticeae)
  Mahelka, V., Kopecký, D., Paštová, L.
  BMC EVOLUTIONARY BIOLOGY 11, 127, 2011 Fulltext: PDF link on intranet only
• Assessment of ploidy and genome constitution of some Musa balbisiana cultivars using DArT markers
  Sales, E.K., Butardo, N.G., Paniagua, H.G., Jansen, H., Doležel, J.
  PHILIPPINE JOURNAL OF CROP SCIENCE 36 (1), 11-18, 2011
• Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives
  Wicker, T., Mayer, K.F.X., Gundlach, H., Martis, M., Steuernagel, B., Scholz, U., Šimková, H., Kubaláková, M., Choulet, F., Taudien, S., Platzer, M., Feuillet, C., Fahima, T., Budak, H., Doležel, J., Keller, B., Stein, N.
  PLANT CELL 23, 1706-1718, 2011 Fulltext: PDF link on intranet only
• Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS
  Berkman, P.J., Skarshewski, A., Lorenc, M.T., Lai, K., Duran, Ch., Ling, E.Y.S., Stiller, J., Smits, L., Imelfort, M., Manoli, S., McKenzie, M., Kubaláková, M., Šimková, H., Batley, J., Fleury, D., Doležel, J., Edwards, D.
  PLANT BIOTECHNOLOGY JOURNAL 9, 768-775, 2011 Fulltext: PDF link on intranet only
• A platform for efficient genotyping in Musa using microsatellite markers
  Christelová, P., Valárik, M., Hřibová, E., Van den Houwe, I., Channeliére, S., Roux, N., Doležel, J.
  AoB PLANTS plr024, , 2011 Fulltext: PDF link on intranet only
• Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes
  Zatloukalová, P., Hřibová, E., Kubaláková, M., Suchánková, P., Šimková, H., Adoración, C., Kahl, G., Millán, T., Doležel, J.
  CHROMOSOME RESEARCH 19, 729-739, 2011 Fulltext: PDF link on intranet only
• Characterization of a new 4BS.7HL wheat-barley translocation line using GISH, FISH, and SSR markers and its effect on the β-glucan content of wheat
  Cseh, A., Kruppa, K., Molnár, I., Rakszegi, M., Doležel, J., Molnár-Láng, M.
  GENOME 54 (10), 795-804, 2011 Fulltext: PDF link on intranet only
• First survey of the wheat chromosome 5A composition through a next generation sequencing approach
  Vitulo, N., Albiero, A., Forcato, C., Campagna, D., Dal Pero, F., Bagnaresi, P., Colaiacovo, M., Faccioli, P., Lamontanara, A, Šimková, H., Kubaláková, M., Perrotta, G., Facella, P., Lopez, L., Pietrella, M., Gianese, G., Doležel, J., Giuliano, G., Cattivelli, L., Valle, G., Stanca, A.M.
  PLoS ONE 6 (10), e26421, 2011 Fulltext: PDF link on intranet only
• A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin
  Doskočilová A., Plíhal O., Volc, J., Chumová J., Kourová, H., Halada P., Petrovská B., Binarová P.
  PLANTA 234, 459–476, 2011
• A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat
  Rustenholz, C., Choulet, F., Laugier, C., Šafář, J., Šimková, H., Doležel, J., Magni, F., Scalabrin, S., Cattonaro, F., Vautrin, S., Bellec, A., Bergès, H., Feuillet, C., Paux, E.
  PLANT PHYSIOLOGY 157 (4), 1596-1608, 2011 Fulltext: PDF link on intranet only
• A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.
  Parlange, F., Oberhaensli, S., Breen, J., Platzer, M., Taudien, S., Šimková, H., Wicker, T., Doležel, J., Keller, B.
  FUNCTIONAL & INTEGRATIVE GENOMICS 11 (4), 671-677, 2011 Fulltext: PDF link on intranet only
• An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers.
  Muñoz-Amatriaín, M., Moscou, M.J., Bhat, P.R., Svensson, J.T., Bartoš, J., Suchánková, P., Šimková, H., Endo, T.R., Fenton, R.D., Lonardi, S., Castillo, A.M., Chao, S., Cistué, L., Cuesta-Marcos, A., Forrest, K.L., Hayden, M.J., Hayes, P.M., Horsley, R.D., Makoto, K., Moody, D., Sato, K., Vallés, M.P., Wulff, B.B.H., Muehlbauer, G.J., Doležel, J., Close, T.J.
  THE PLANT GENOME 4 (3), 238-249, 2011 Fulltext: PDF link on intranet only
• Chromosome isolation by flow sorting in Aegilops umbellulata and Ae. comosa and their allotetraploid hybrids Ae. biuncialis and Ae. geniculata
  Molnár, I., Kubaláková, M., Šimková, H., Cseh, A., Molnár-Láng, M., Doležel, J.
  PLoS ONE 6 (11), e27708, 2011 Fulltext: PDF link on intranet only
• Evidence of selective changes in winter wheat in middle-European environments reflected by allelic diversity at loci affecting plant height and photoperiodic response
  Šíp V., Chrpová J., Žofajová A., Milec Z., Mihalik D., Pánková K., Snape J. W
  JOURNAL OF AGRICULTURAL SCIENCE 149, 313 - 326, 2011 Fulltext: PDF link on intranet only