Článek v odborném periodiku 

2018

Dirk E. Boonzajer Flaes, Jan Stopka, Sergey Turtaev, Johannes F. de Boer, Tomáš Tyc, Tomáš Čižmár, Robustness of Light-Transport Processes to Bending Deformations in Graded-Index Multimode Waveguides, Physical Review Letters, V120, 233901. ABSTRACT

2017

Ivo T. Leite, Sergey Turtaev, Xin Jiang, Martin Šiler, Alfred Cuschieri, Philip St.J. Russell, & Tomáš Čižmár, 3-D holographic optical manipulation through high-NA soft-glass multimode fibre, Nature Photonics (advanced online publication) ABSTRACT

Arzola, A. V., Villasante-Barahona, M., Volke-Sepulveda, K., Jákl, Petr, Zemánek, Pavel. Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets. Physical Review Letters.  2017, vol. 118, iss. 13, pp. 1-5, 138002. ISSN 0031-9007.  ABSTRACT

Hrubanová, Kamila, Krzyžánek, Vladislav, Samek, Ota, Skoupý, Radim, Šiler, Martin, Ježek, Jan, Obruča, S., Zemánek, Pavel. Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis.  2017, vol. 23, S1, pp. 1158-1159. ISSN 1431-9276.  ABSTRACT

Karásek, Vítězslav, Šiler, Martin, Brzobohatý, Oto, Zemánek, Pavel. Dynamics of an optically bound structure made of particles of unequal sizes. Optics Letters.  2017, vol. 42, iss. 7, pp. 1436-1439. ISSN 0146-9592.  ABSTRACT

Rebrošová, K., Šiler, Martin, Samek, Ota, Růžička, F., Bernatová, Silvie, Ježek, Jan, Zemánek, Pavel, Holá, V. Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy. Future Microbiology.  2017, vol. 12, iss. 10, pp. 881-890. ISSN 1746-0913.  ABSTRACT

Rebrošová, K., Šiler, Martin, Samek, Ota, Růžička, F., Bernatová, Silvie, Holá, V., Ježek, Jan, Zemánek, Pavel, Sokolová, J., Petráš, P. Rapid identification of staphylococci by Raman spectroscopy. Scientific Reports.  2017, vol. 7, pp. 1-8,  14846. ISSN 2045-2322.  ABSTRACT

Simpson, Stephen Hugh; Zemánek, Pavel; Marago, O.M.; Jones, P.H.; Hanna, S. Optical Binding of Nanowires. Nano Letters, 2017, vol. 17, iss. 6, pp. 3485-3492. ISSN 1530-6984. ABSTRACT

Šiler, Martin, Jákl, Petr, Brzobohatý, Oto, Ryabov, A., Filip, R., Zemánek, Pavel. Thermally induced micro-motion by inflection in optical potential. Scientific Reports.  2017, vol. 7, pp. 1-8,  1697. ISSN 2045-2322. ABSTRACT 

Turtaev, S.; Leite, I.T.; Mitchel, K.J.; Padgett, M. J.; Phillips, D. B.; Čižmár, Tomáš. Comparison of nematic liquid-crystal and DMD based spatial light modulation in complex photonics. Optics Express, 2017, vol. 25, iss. 24, pp. 29874-29884. ISSN 1094-4087. ABSTRACT

2016

Antognozzi, M.; Bermingham, C.R.; Harniman, R.L.; Simpson, Stephen Hugh; Senior, J.; Hayward, I.R.; Hoerber, H.; Dennis, M.R.; Bekshaev, A.Y.; Bliokh, K.Y.; Nori, F. Direct measurements of the extraordinary optical momentum and transverse spin-dependent force using a nano-cantilever. Nature Physics. 2016, vol. 12, iss. 8, pp. 731-735. ISSN 1745-2473. ABSTRACT

Brzobohatý, Oto; Hernández, R.J.; Simpson, Stephen Hugh; Mazzulla, A.; Cipparrone, G.; Zemánek, Pavel. Chiral particles in the dual-beam optical trap. Optics Express. 2016, vol. 24, iss. 23, 26382:1-10. ISSN 1094-4087. ABSTRACT

Bzdek, B. R.; Power, R. M.; Simpson, Stephen Hugh; Reid, J. P.; Royall, C. P. Precise, contactless measurements of the surface tension of picolitre aerosol droplets. Chemical Science. 2016, vol. 7, iss. 1, pp. 274-285. ISSN 2041-6520. ABSTRACT

Filip, R.; Zemánek, Pavel. Noise-to-signal transition of a Brownian particle in the cubic potential: I. general theory. Journal of Optics. 2016, vol. 18, iss. 6, 065401:1-8. ISSN 2040-8978. ABSTRACT

Hrubanová, Kamila; Samek, Ota; Haroniková, A.; Bernatová, Silvie; Zemánek, Pavel; Márová, I.; Krzyžánek, Vladislav. Morphological and Production Changes in Stressed Red Yeasts Monitored Using SEM and Raman Spectroscopy. Microscopy and Microanalysis. 2016, vol. 22, S3, pp. 1146-1147. ISSN 1431-9276. ABSTRACT

Irrera, A.; Maggazu, A.; Artoni, P.; Simpson, Stephen Hugh; Hanna, S.; Jones, P.H.; Priolo, F.; Gucciardi, P.G.; Marago, O.M. Photonic Torque Microscopy of the Nonconservative Force Field for Optically Trapped Silicon Nanowires. Nano Letters. 2016, vol. 16, iss. 7, pp. 4181-4188. ISSN 1530-6984. ABSTRACT

Mravec, F.; Obruča, S.; Krzyžánek, Vladislav; Sedláček, P.; Hrubanová, Kamila; Samek, Ota; Kučera, D.; Benešová, P.; Nebesářová, Jana. Accumulation of PHA granules in Cupriavidus necator as seen by confocal fluorescence microscopy. FEMS Microbiology Letters. 2016, vol. 363, iss. 10, fnw094:1-7. ISSN 0378-1097. ABSTRACT

Obruča, S.; Sedláček, P.; Krzyžánek, Vladislav; Mravec, F.; Hrubanová, Kamila; Samek, Ota; Kučera, D.; Benešová, P.; Márová, I. Accumulation of Poly(3-hydroxybutyrate) Helps Bacterial Cells to Survive Freezing. PLoS ONE. 2016, vol. 11, iss. 6, 0157778:1-16. E-ISSN 1932-6203. ABSTRACT

Obruča, S.; Sedláček, P.; Mravec, F.; Samek, Ota; Márová, I. Evaluation of 3-hydroxybutyrate as an enzyme-protective agent against heating and oxidative damage and its potential role in stress response of poly(3-hydroxybutyrate) accumulating cells. Applied Microbiology and Biotechnology. 2016, vol. 100, iss. 3, pp. 1365-1376. ISSN 0175-7598. ABSTRACT

Ryabov, A.; Zemánek, Pavel; Filip, R. Thermally induced passage and current of particles in a highly unstable optical potential. Physical Review E. 2016, vol. 94, iss. 4, 042108:1-9. ISSN 2470-0045.  ABSTRACT

Samek, Ota; Obruča, S.; Šiler, Martin; Sedláček, P.; Benešová, P.; Kučera, D.; Márová, I.; Ježek, Jan; Bernatová, Silvie; Zemánek, Pavel. Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16. Sensors. 2016, vol. 16, iss. 11, 1808:1-7. ISSN 1424-8220. ABSTRACT

Simpson, Stephen Hugh; Chvátal, Lukáš; Zemánek, Pavel. Synchronization of colloidal rotors through angular optical binding. Physical Review A. 2016, vol. 93, iss. 2, 023842:1-12. ISSN 2469-9926. ABSTRACT

Šiler, Martin; Ježek, Jan; Jákl, Petr; Pilát, Zdeněk; Zemánek, Pavel. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Optics Letters. 2016, vol. 41, iss. 5, pp. 870-873. ISSN 0146-9592.  ABSTRACT

Tomori, Z.; Keša, P.; Nikorovič, M.; Kaňka, Jan; Jákl, Petr; Šerý, Mojmír; Bernatová, Silvie; Valušová, E.; Antalík, M.; Zemánek, Pavel. Holographic Raman tweezers controlled by multi-modal natural user interface. Journal of Optics. 2016, vol. 18, iss. 1, 015602:1-9. ISSN 2040-8978. ABSTRACT 

Zemánek, Pavel; Šiler, Martin; Brzobohatý, Oto; Jákl, Petr; Filip, R. Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry. Journal of Optics. 2016, vol. 18, iss. 6, 065402:1-10. ISSN 2040-8978. ABSTRACT 

Konferenční příspěvek - zahraniční konference

2017

Hrubanová, Kamila, Krzyžánek, Vladislav, Samek, Ota, Šiler, Martin, Zemánek, Pavel, Hároniková, A., Marová, I. Monitoring lipid production in yeast using SEM and Raman spectroscopy. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 308-309. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

Jákl, Petr, Traegaardh, Johanna, Ježek, Jan, Šiler, Martin, Zemánek, Pavel, Čižmár, T. Imaging via multimode optical fiber: calibration by internal reference. In: Gajović, A.; Weber, I.; Kovačević, G.; Čadež, V.; Šegota, S.; Peharec Štefanić, P.; Vidoš, A. ed. 13th Multinational Congress on Microscopy: Book of Abstracts.  Zagreb: Ruder Bošković Institute, Croatian Microscopy Society, 2017, s. 181-182. ISBN 978-953-7941-19-2. [Multinational Congress on Microscopy /13./, Rovinj, 24.09.2017-29.09.2017, HR].

2016

Damková, Jana; Chvátal, Lukáš; Brzobohatý, Oto; Svak, V.; Šiler, Martin; Simpson, Stephen Hugh; Zemánek, Pavel. Characterizing particle pairs optically bound in "tractor beam". In Optical Trapping and Optical Micromanipulation XIII (Proceedings of SPIE 9922). Bellingham: SPIE, 2016, pp. 1-7, 99221Q. ISBN 9781510602359. ISSN 0277-786X. [Optical Trapping and Optical Micromanipulation /13./, San Diego, 28.08.2016-01.09.2016, US].

Damková, Jana; Chvátal, Lukáš; Brzobohatý, Oto; Zemánek, Pavel. Optical binding of particle pairs in retro-reflected beam geometry. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-7, č. článku 101420Q. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Jákl, Petr; Skalický, J.; Ježek, Jan; Šerý, Mojmír; Novotný, D.; Zemánek, Pavel. Two-photon photopolymerization with multiple laser beams. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-5, č. článku 101420J. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Obruča, S.; Doskočil, L.; Krzyžánek, Vladislav; Hrubanová, Kamila; Sedláček, P.; Mravec, F.; Samek, Ota; Kučera, J.; Benešová, P.; Márová, I. Polyhydroxyalkanoates in bacterial cells – more than just storage materials. In Materials Science Forum. Vol. 851. London: Trans Tech Publications, 2016, pp. 20-25. ISSN 1662-9752. [Conference on Chemistry and Life /6./, Brno, 02.09.2016-04.09.2016, CZ].

Pilát, Zdeněk; Ježek, Jan; Šmatlo, Filip; Kaňka, Jan; Zemánek, Pavel. Directed evolution of enzymes using microfluidic chips. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-7, č. článku 101420A. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Samek, Ota; Hároniková, A.; Ježek, Jan; Bernatová, Silvie; Márová, I.; Breierová, E.; Šerý, Mojmír; Šiler, Martin; Zemánek, Pavel. Raman spectroscopy to monitor the effects of temperature regime and medium composition on micro-organism growth. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-4, č. článku 101420B. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Šiler, Martin; Brzobohatý, Oto; Chvátal, Lukáš; Karásek, Vítězslav; Paták, Aleš; Pokorná, Zuzana; Mika, Filip; Zemánek, Pavel. Golden nanoparticle in optical tweezers: influence of shape and orientation on optical trapping. In Mika, Filip (ed.). Proceedings of the 15th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments CAS, 2016, s. 64-65. ISBN 978-80-87441-17-6. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /15./, Skalský dvůr, 29.05.2016-03.06.2016, CZ].

Šiler, Martin; Samek, Ota; Bernatová, Silvie; Mlynariková, K.; Ježek, Jan; Šerý, Mojmír; Krzyžánek, Vladislav; Hrubanová, Kamila; Holá, M.; Růžička, F.; Zemánek, Pavel. Principal component analysis of Raman spectroscopy data for determination of biofilm forming bacteria and yeasts. In Mika, Filip (ed.). Proceedings of the 15th International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation. Brno: Institute of Scientific Instruments CAS, 2016, s. 66-67. ISBN 978-80-87441-17-6. [International Seminar on Recent Trends in Charged Particle Optics and Surface Physics Instrumentation /15./, Skalský dvůr, 29.05.2016-03.06.2016, CZ].

Šiler, Martin; Jákl, Petr; Filip, R.; Ryabov, A.; Zemánek, Pavel. Theoretical analysis of motion of a microparticle in an optically created cubic potential. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-7, č. článku 101420L. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Tomori, Z.; Keša, P.; Nikorovič, M.; Kaňka, Jan; Zemánek, Pavel. Semi-automated sorting using holographic optical tweezers remotely controlled by eye/hand tracking camera. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-9, č. článku 101420D. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK].

Zemánek, Pavel; Pilát, Zdeněk; Ježek, Jan; Bernatová, Silvie; Aas, M.; Kiraz, A.; Jonáš, A. Temperature-induced tuning of emission spectra of liquid-crystal optical microcavities. In 20th Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics (Proceedings of SPIE 10142). Bellingham: SPIE, 2016, pp. 1-9, č. článku 101420F. ISSN 0277-786X. [Slovak-Czech-Polish Optical Conference on Wave and Quantum Aspects of Contemporary Optics /20./, Jasná, 05.09.2016-09.09.2016, SK]. 

Smluvní výzkum

2017

Jákl, Petr, Zemánek, Pavel. SMV-2017-24: Zrychlení plošné fotopolymerace. . Brno: Ústav experimentálnej fyziky SAV, 2017. 2 s.

Jákl, Petr, Šerý, Mojmír. SMV-2017-23: Optimalizace nanolitografie. . Brno: Ústav experimentálnej fyziky SAV, 2017. 2 s.

2016

Matějka, Milan; Horáček, Miroslav; Meluzín, Petr; Chlumská, Jana; Král, Stanislav; Kolařík, Vladimír; Krátký, Stanislav; Fořt, Tomáš; Oulehla, Jindřich; Šerý, Mojmír. SMV-2016-03: Přesné reliéfní struktury. Brno: TESCAN Brno s.r.o., 2016. 10 s.

Aplikované výsledky
 

2016

Ježek, Jan; Pilát, Zdeněk. Mikrofluidní čip pro dielektroforetické třídění emulsních kapének planárními elektrodami kombinovaný s detekcí fluorescence. 2016.

Pilát, Zdeněk; Ježek, Jan. Dvoukanálový fluorescenční systém s optickými vlákny. 2016.

Šerý, Mojmír; Lazar, Josef; Zemánek, Pavel. Laserový mikroskopový adaptér. 2016.