Biologia plantarum 2012, 56:31-36 | DOI: 10.1007/s10535-012-0012-7
Molecular cloning, promoter analysis, and expression profile of VvERF3b gene in Vitis vinifera
- 1 College of Life Sciences, Liaoning Normal University, and Key Laboratory of Plant Biotechnology of Liaoning Province, Dalian, P.R. China
Ethylene response factors (ERFs) are involved in many plant development events and stress defenses. In this study, an ERF gene, VvERF3b, was cloned from the leaves of Vitis vinifera. VvERF3b belongs to ERF group VIIIa. Expression of the gene was induced by abscisic acid, ethephon, and salicylic acid, but not by NaCl. Promoter sequence analysis of the VvERF3b gene revealed that there are several potential cis-acting elements that may be potentially recognized and bound by the transcription factors related to hormones and stress responses. Deletion analysis showed that the 5'-flanking sequence of -1047 to -585 from the transcriptional start site is essential to the high expression of the VvERF3b gene, whereas the sequence fragment of -1324 to -1047 revealed suppression effect. The result indicated that the region appears to contain cis-acting elements that can be bound by the proteins in a transcription complex to induce the inhibition of gene expression.
Keywords: abscisic acid; cis-acting elements; ethephon; ethylene response factor; salicylic acid
Subjects: abscisic acid; cis-acting elements; ethephon; ethylene response factor; salicylic acid; amino acid sequence; phylogenetic tree; NaCl
Species: Vitis vinifera
Received: February 10, 2010; Accepted: January 17, 2011; Published: March 1, 2012Show citation
ACS | AIP | APA | ASA | Harvard | Chicago | IEEE | ISO690 | MLA | NLM | Turabian | Vancouver |
References
- Agarwal, P.K., Jha, B.: Transcription factors in plants and ABA dependent and independent abiotic stress signalling. - Biol. Plant. 54: 201-212, 2010. Go to original source...
- Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.: A novel mode of DNA recognition by a betasheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. - EMBO J. 17: 5484-5496, 1998. Go to original source...
- Berrocal-Lobo, M., Molina, A., Solano, R.: Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. - Plant J. 29: 23-32, 2002. Go to original source...
- Chakravarthy, S., Tuori, R.P., D'Ascenzo, M.D., Fobert, P.R., Despres, C., Martin, G.B.: The tomato transcription factor Pti4 regulates defense-related gene expression via GCC box and non-GCC box cis-elements. - Plant Cell 15: 3033-3050, 2003. Go to original source...
- Champion, A., Hebrard, E., Parra, B., Bournaud, C., Marmey, P., Tranchant, C., Nicole, M.: Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene and Xanthomonas. - Mol. Plant Pathol. 10: 471-485, 2009. Go to original source...
- Cheong, Y.H., Chang, H.S., Gupta, R., Wang, X., Zhu, T., Luan, S.: Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis. - Plant Physiol. 129: 661-677, 2002. Go to original source...
- Fujimoto, S.Y., Ohta, M., Usui, A., Shinshi, H., Ohme-Takagi, M.: Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC boxmediated gene expression. - Plant Cell 12: 393-404, 2000. Go to original source...
- Guillemaut, P., Maréchal-Drouard, L.: Isolation of plant DNA: a fast, inexpensive, and reliable method. - Plant mol. Biol. Rep. 10: 60-65, 1992. Go to original source...
- Hao, D., Ohme-Takagi, M., Sarai, A.: Unique mode of GCC box recognition by the DNA-binding domain of ethyleneresponsive element-binding factor (ERF domain) in plant. - J. biol. Chem. 273: 26857-26861, 1998. Go to original source...
- Higo, K., Ugawa, Y., Iwamoto, M., Korenaga, T.: Plant cisacting regulatory DNA elements (PLACE) database: 1999. - Nucl. Acids Res. 27: 297-300, 1999. Go to original source...
- Hu, Y., Zhao, L., Chong, K., Wang, T.: Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethyleneresponsive genes expression besides affects growth and development in Arabidopsis. - J. Plant Physiol. 165: 1717-1725, 2008. Go to original source...
- Jin, L.G., Liu, J.Y.: Molecular cloning, expression profile and promoter analysis of a novel ethylene responsive transcription factor gene GhERF4 from cotton (Gossypium hirstum). - Plant Physiol. Biochem. 46: 46-53, 2008. Go to original source...
- Lenochová, Z., Soukup, A., Votrubová, O.: Aerenchyma formation in maize roots. - Biol. Plant. 53: 263-270, 2009. Go to original source...
- Liang, H., Lu, Y., Liu, H., Wang, F., Xin, Z., Zhang, Z.: A novel activator-type ERF of Thinopyrum intermedium, TiERF1, positively regulates defence responses. - J. exp. Bot. 59: 3111-3120, 2008. Go to original source...
- Lorenzo, O., Piqueras, R., Sanchez-Serrano, J.J., Solano, R.: ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense. - Plant Cell 15: 165-178, 2003. Go to original source...
- Nakano, T., Suzuki, K., Fujimura, T., Shinshi, H.: Genome-wide analysis of the ERF gene family in Arabidopsis and rice. - Plant Physiol. 140: 411-432, 2006. Go to original source...
- Ohme-Takagi, M., Shinshi, H.: Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. - Plant Cell 7: 173-182, 1995. Go to original source...
- Ohta, M., Matsui, K., Hiratsu, K., Shinshi, H., Ohme-Takagi, M.: Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. - Plant Cell 13: 1959-1968, 2001.
- Onate-Sanchez, L., Singh, K.B.: Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection. - Plant Physiol. 128: 1313-1322, 2002. Go to original source...
- Pandey, G.K., Grant, J.J., Cheong, Y.H., Kim, B.G., Li, L., Luan, S.: ABR1, an APETALA2-domain transcription factor that functions as a repressor of ABA response in Arabidopsis. - Plant Physiol. 139: 1185-1193, 2005. Go to original source...
- Pirrello, J., Jaimes-Miranda, F., Sanchez-Ballesta, M.T., Tournier, B., Khalil-Ahmad, Q., Regad, F., Latche, A., Pech, J.C., Bouzayen, M.: Sl-ERF2, a tomato ethylene response factor involved in ethylene response and seed germination. - Plant Cell Physiol. 47: 1195-1205, 2006. Go to original source...
- Pre, M., Atallah, M., Champion, A., De Vos, M., Pieterse, C.M., Memelink, J.: The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense. - Plant Physiol. 147: 1347-1357, 2008. Go to original source...
- Sakuma, Y., Liu, Q., Dubouzet, J.G., Abe, H., Shinozaki, K., Yamaguchi-Shinozaki, K.: DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. - Biochem. Biophys. Res. Commun. 290: 998-1009, 2002. Go to original source...
- Shahmuradov, I.A., Solovyev, V.V., Gammerman, A.J.: Plant promoter prediction with confidence estimation. - Nucleic Acids Res. 33: 1069-1076, 2005. Go to original source...
- Song, C.P., Agarwal, M., Ohta, M., Guo, Y., Halfter, U., Wang, P., Zhu, J.K.: Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses. - Plant Cell 17: 2384-2396, 2005. Go to original source...
- Tournier, B., Sanchez-Ballesta, M.T., Jones, B., Pesquet, E., Regad, F., Latche, A., Pech, J.C., Bouzayen, M.: New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element. - FEBS Lett. 550: 149-154, 2003. Go to original source...
- Van der Fits, L., Memelink, J.: The jasmonate-inducible AP2/ERF-domain transcription factor ORCA3 activates gene expression via interaction with a jasmonate-responsive promoter element. - Plant J. 25: 43-53, 2001. Go to original source...
- Wu, K., Tian, L., Hollingworth, J., Brown, D.C., Miki, B.: Functional analysis of tomato Pti4 in Arabidopsis. - Plant Physiol. 128: 30-37, 2002. Go to original source...
- Wu, L., Zhang, Z., Zhang, H., Wang, X.C., Huang, R.: Transcriptional modulation of ethylene response factor protein JERF3 in the oxidative stress response enhances tolerance of tobacco seedlings to salt, drought, and freezing. - Plant Physiol. 148: 1953-1963, 2008.
- Yanagisawa, S., Yoo, S.D., Sheen, J.: Differential regulation of EIN3 stability by glucose and ethylene signalling in plants. - Nature 425: 521-525, 2003. Go to original source...
- Yang, Z., Tian, L., Latoszek-Green, M., Brown, D., Wu, K.: Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. - Plant mol. Biol. 58: 585-596, 2005. Go to original source...
- Yoo, S.D., Cho, Y.H., Sheen, J.: Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. - Nature Protocols 2: 1565-1572, 2007. Go to original source...
- Zhang, G., Chen, M., Li, L., Xu, Z., Chen, X., Guo, J., Ma, Y.: Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco. - J. exp. Bot. 60: 3781-3796, 2009. Go to original source...
- Zhang, G.X., Yuan, B.M., Xu, P.R., Xue, L.X.: [Modified touchdown PCR efficiently improves specificity of PCR.] - J. Zhengzhou Univ. 38: 352-354, 2003. [In Chin.]
- Zhang, H., Huang, Z., Xie, B., Chen, Q., Tian, X., Zhang, X., Zhang, H., Lu, X., Huang, D., Huang, R.: The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. - Planta 220: 262-270, 2004. Go to original source...
- Zhang, J.J., Wang, Y.J., Wang, X.P., Yang, K.Q., Yang, J.X.: An improved method for rapidly extracting total RNA from Vitis. - J. Fruit Sci. 20: 178-181, 2003.