Biologia plantarum 56:641-647, 2012 | DOI: 10.1007/s10535-012-0255-3

Identification and characterization of a novel gene encoding myb-box binding zinc finger protein in Gossypium arboreum

M. Zahur1,*, A. Maqbool3, M. Irfan3, A. Jamal2, N. Shahid2, B. Aftab2, T. Husnain2
1 Department of Biochemistry and Molecular Biology, University of Gujrat, Gujrat, Pakistan
2 Center of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
3 Forman Christian College, Chartered University, Lahore, Pakistan

Zinc finger proteins are encoded by the genes chiefly involved in stress resistance hormone signal transduction of plants. In this study, a cDNA encoding a zinc finger transcription factor was isolated by the yeast one-hybrid system from Gossypium arboreum using the MYB-box element of the universal stress gene (GUSP1) promoter as bait. The corresponding protein (named GaZnF) can bind specifically to a 13 bp MYB-box region. The GaZnF cDNA is 1093 bp in length, including a 510 bp open reading frame. The predicted GaZnF protein contains ANI-A20 motifs and shares a high sequence similarity with zinc finger proteins from other plants. Spatial expression pattern of GaZnF was studied under drought, heavy metals and salt stresses through real-time PCR. The gene showed enhanced expression under each stress treatment with maximum transcript abundance in root tissues. The results support the hypothesis that G. arboreum zinc finger proteins are involved in plant response to drought, salt and heavy metal stresses.

Keywords: drought; gene expression; GaZnF protein; heavy metals; salinity
Subjects: water stress; gene expression; GaZnF protein; zinc finger proteins; transcription factor; amino acid sequence; nucleotide sequence; phylogenetic tree; NaCl; heavy metals
Species: Gossypium arboreum

Received: May 19, 2011; Accepted: December 5, 2011; Published: December 1, 2012Show citation

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Zahur, M., Maqbool, A., Irfan, M., Jamal, A., Shahid, N., Aftab, B., & Husnain, T. (2012). Identification and characterization of a novel gene encoding myb-box binding zinc finger protein in Gossypium arboreum. Biologia plantarum56(4), 641-647. doi: 10.1007/s10535-012-0255-3.
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References

  1. Alexandersson, E., Fraysse, L., Sjövall-Larsen, S., Gustavsson, S., Fellert, M., Karlsson, M., Johanson U., Kjellbom, P.: Whole gene family expression and drought stress regulation of aquaporins. - Plant mol. Biol. 59: 469-484, 2005. Go to original source...
  2. Altschul, F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic local alignment search tool. - J. mol. Biol. 215: 403-410, 1990. Go to original source...
  3. Bastola, D.R., Pethe, V.V., Winicov, I.: Alfin1, a novel zincfinger protein in alfalfa roots that binds to promoter elements in the salt-inducible MsPRP2 gene. - Plant. mol. Biol. 38:1123-1135, 1998. Go to original source...
  4. Chen, W., Provart, N.J., Glazebrook, J., Katagiri, F., Chang, H.S., Eulgem, T., Mauch, F., Luan, S., Zou, G., Whitham, S.A., Budworth, P.R., Tao, Y., Xie, Z., Chen, X., Lam, S., Kreps, J.A., Harper, J.F., Si-Ammour, A., Mauch-Mani, B., Heinlein, M., Kobayashi, K., Hohn, T., Dangl, J.L., Wang, X., Zhu, T.: Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. - Plant Cell 14: 559-574, 2002. Go to original source...
  5. Ciftci-Yilmaz, S., Morsy, M.R., Song, L, Coutu, A., Krizek, B.A., Lewis, M.W., Warren, D., Cushman, J., Connolly, E.L., Mittler, R.: The EAR-motif of the Cys2/His2-type zinc finger protein Zat7 plays a key role in the defense response of Arabidopsis to salinity stress. - J. biol. Chem. 282: 9260-9268, 2007. Go to original source...
  6. Davletova, S., Schlauch, K., Coutu, J., Mittler, R.: The zincfinger protein Zat12 plays a central role in reactive oxygen and abiotic stress signalling in Arabidopsis. - Plant. Physiol. 139: 847-856, 2005. Go to original source...
  7. Evans, P.C., Ovaa, H., Hamon, M., Kilshaw, P.E.., Hamm, S., Bauer, S., Ploegh, H.L., Smith, T.S.: Zinc-finger protein A20, a regulator of inflammation and cell survival, has deubiquitinating activity. - Biochem. J. 378: 727-734, 2004. Go to original source...
  8. Görner, W., Durchschlag, E., Martinez-Pastor, M.T., Estruch, F., Ammerer, G., Hamilton, B., Ruis, H., Schüller, C.: Nuclear localization of the C2H2 zinc finger protein Msn2p is regulated by stress and protein kinase A activity. - Gene Dev. 12: 586-597, 1998. Go to original source...
  9. Grand, R.J.: Acylation of viral and eukaryotic proteins. - Biochem. J. 258: 625-638, 1989. Go to original source...
  10. Hoffman, C.S., Winston, F.: A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. - Gene 57: 267-272, 1987. Go to original source...
  11. Huang, J., Teng, L., Li, L., Liu, T., Li, L., Chen, D., Xu, L.G., Zhai, Z., Shu, H.B.: ZNF216 is an A20-like and IkappaB kinase gamma-interacting inhibitor of NFkappaB activation. - J. biol. Chem. 279: 16847-16853, 2004. Go to original source...
  12. Ito, Y., Katsura, K., Maruyama, K., Taji, T., Kobayashi, M., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice. - Plant Cell Physiol. 47: 141-153, 2006. Go to original source...
  13. Jaakola, L., Pirttila, A.M., Halonen, M., Hohtola, A.: Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit. - Mol. Biol. 19: 201-203, 2001. Go to original source...
  14. Kaiser, P., Auer, B.: Rapid shuttle plasmid preparation from yeast cells by transfer to E. coli. - BioTech 14: 552, 1993.
  15. Kam, J., Gresshoff, P., Shorter, R., Xue, G.-P.: Expression analysis of RING zinc finger genes from Triticum aestivum and identification of TaRZF70 that contains four RING-H2 domains and differentially responds to water deficit between leaf and root. - Plant. Sci. 173: 650-659, 2007. Go to original source...
  16. Kam, W.: Wheat Zinc Finger Proteins Potentially Involved in Drought Adaptation. - PhD Thesis, School of Integrative Biology, The University of Queensland, Brisbane 2008.
  17. Kanneganti, V., Gupta, A.K.: Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice. - Plant. mol. Biol. 66: 445-462, 2008. Go to original source...
  18. Kumar, S., Tamura, K., Nei, M.: MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. - Brief. Bioinform. 5: 150-163, 2004. Go to original source...
  19. Liu, Y., Dai, S., Beachy, R.N.: Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. - Biochem. J. 405: 243-249, 2007. Go to original source...
  20. Livak, K.J., Schmittgen, T.D.: Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) method. - Methods 25: 402-408, 2001. Go to original source...
  21. Lopato, S., Bazanova, N., Morran, S., Milligan, A.S., Shirley, N., Langridge, P.: Isolation of plant transcription factors using a modified yeast one-hybrid system. - Plant. Methods 2: 3, 2006. Go to original source...
  22. Maqbool, A., Zahur, M., Husnain, T., Riazuddin, S.: Identification of GUSP1 & GUSP2, two drought responsive genes with homology to universal stress proteins in Gossypium arboreum. - Plant. mol. Biol. Rep. 27: 109-114, 2008.
  23. Mukhopadhyay, A., Vij, S., Tyagi, A.K.: Overexpression of a zinc finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco. - Proc. nat. Acad. Sci. USA 101: 6309-6314, 2004. Go to original source...
  24. Nystrom, T., Neidhardt, F.C.: Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest. - Mol. Microbiol. 11: 537-544, 1994. Go to original source...
  25. Oh, S.J., Song, S.I., Kim, Y.S., Jang, H.J., Kim, S.Y., Kim, M., Kim, Y.K., Nahm, B.H., Kim, J.K.: Arabidopsis CBF3/DREB1A and ABF3 in transgenic rice increased tolerance to abiotic stress without stunting growth. - Plant. Physiol. 138: 341-351. 2005. Go to original source...
  26. Sakamoto, A., Omirulleh, S., Nakayama, T., Iwabuchi, M.: A zinc-finger-type transcription factor WZF-1 that binds to a novel cis-acting element element of histone gene promoters represses its own promoter. - Plant Cell Physiol. 37: 557-562, 1996. Go to original source...
  27. Sakamoto, H., Araki, T., Meshi, T., Iwabuchi, M.: Expression of a subset of the Arabidopsis Cys(2)/His(2)-type zincfinger protein gene family under drought stress. - Gene 248: 23-32, 2000. Go to original source...
  28. Sakamoto, H., Maruyama, K., Sakuma, Y., Meshi, T., Iwabuchi, M., Shinozaki, K., Yamaguchi-Shinozaki, K.: Arabidopsis cys2/his2-type zinc-finger proteins function as transcription repressors under drought, cold, and high-salinity stress conditions. - Plant. Physiol. 136: 2734-2746, 2004. Go to original source...
  29. Sharma, Y.K., Hinojos, C.M., Mehdy, M.C.: cDNA cloning, structure and expression of a novel pathogenesis-related protein in bean. - Mol. Plant. Microb. Interact. 5: 89-95, 1992. Go to original source...
  30. Shinozaki, K., Yamaguchi-Shinozaki, K, Seki, M.: Regulatory network of gene expression in the drought and cold stress responses. - Curr. Opin. Plant. Biol. 6: 410-417, 2003. Go to original source...
  31. Shoji, S., Hironori, K., Zbigniew, R., Rafael, C., Julio, S., Kyoko, M., Masaru, O., Hiroshi, T.: Stress-responsive zinc finger gene ZPT2-3 plays a role in drought tolerance in petunia. - Plant. J. 36: 830-841, 2003.
  32. Sugimoto, K., Takeda, S., Hirochika, H.: Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2. - Plant. J. 36: 550-564, 2003. Go to original source...
  33. Sun, J., Jiang, H., Xu, Y., Li, H., Wu, X., Xie, Q., Li, C.: The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis. - Plant Cell Physiol. 48: 1148-1158, 2007. Go to original source...
  34. Teige, M., Scheikl, E., Eulgem, T., Dóczi, R., Ichimura, K., Shinozaki, K., Dangl, J.L., Hirt, H.: The MKK2 pathway mediates cold and salt stress signalling in Arabidopsis. - Mol. Cells 15: 141-152, 2004. Go to original source...
  35. Thompson, J.D., Higgins, D.G., Gibson, T.J.: CLUSTALW: the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. - Nucl. Acids Res. 22: 4673-4680, 1994. Go to original source...
  36. Towler, D.A., Gordon, J.I., Adams, S.P., Glaser, L.: The biology and enzymology of eukaryotic protein acylation. - Annu. Rev. Biochem. 57: 69-99, 1998. Go to original source...
  37. Urao, T., Yamaguchi-Shinozaki, K., Urao, S., Shinozaki, K.: An Arabidopsis myb homolog is induced by drought stress and its gene product binds to the conserved MYB recognition sequence. - Plant Cell 5: 1529-1539, 1993. Go to original source...
  38. Vij, S., Tyagi, A.K.: Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinger(s) in rice and their phylogenetic relationship with Arabidopsis. - Mol. Genet. Genom. 276: 565-575, 2006. Go to original source...
  39. Wang, J., Xia, X., Wang, J., Yin, W.: Stress responsive zincfinger protein gene of Populus euphratica in tobacco enhances salt tolerance. - J. Integr. Plant Biol. 50: 56-61, 2008. Go to original source...
  40. Xu, D.Q., Huang, J., Guo, S.Q., Yang, X., Bao, Y.M., Tang, H.J., Zhang, H.S.: Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.). - FEBS Lett. 582: 1037-1043, 2008. Go to original source...
  41. Yanagisawa, S.: A novel DNA-binding domain that may form a single zinc finger motif. - Nucl. Acids Res. 23: 3403-3410, 1995. Go to original source...
  42. Yang, X., Sun, C., Hu, Y., Lin, Z.: Molecular cloning and characterization of a gene encoding RING zinc finger ankyrin protein from drought-tolerant Artemisia desertorum. - J. Biosci. 33: 103-112, 2008. Go to original source...
  43. Zahur, M., Maqbool, A., Irfan, M., Barozai, K.M.Y., Rashid, B., Riazuddin, S., Husnain, T.: Isolation and functional analysis of the cotton universal stress protein promoter in response to phytohormones and abiotic stresses. - Mol. Biol. 43: 628-635, 2009. Go to original source...