Biologia plantarum 57:267-273, 2013 | DOI: 10.1007/s10535-012-0292-y
Isolation and characterization of purple acid phosphatase gene during seedling development in mungbean
- 1 Center for Agricultural Biotechnology, Kasetsart University, Nakhon Pathom, Thailand
- 2 Center of Excellence on Agricultural Biotechnology: (AG-BIO/PERDO-CHE), Bangkok, Thailand
- 3 Department of Agronomy, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Nakhon Pathom, Thailand
- 4 Department of Agronomy, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand
Purple acid phosphatases (PAPs), which are normally found in plant tissues, can hydrolyze a broad spectrum of phosphate esters. In this study, a mungbean [Vigna radiata (L.) Wilczek cv. KPS1] acid phosphatase gene (VrPAP1) was isolated from seedling cotyledons. The full-length of VrPAP1 cDNA contained an open reading frame of 1 644 bp encoding 547 amino acid residues with a predicted molecular mass of 62.07 kDa. Sequence analysis showed that VrPAP1 is purple acid phosphatase. RNA blot analyses indicated that the VrPAP1 accumulated during the first hour in cotyledons of germinating seeds and reached a maximum expression after 24 h and then decreased. The VrPAP1 mRNA was observed in cotyledons, hypocotyls and leaves but not in radicles or dry seeds. DNA blot analysis indicated that VrPAP1 is a single copy gene in the mungbean genome.
Keywords: gene expression; RACE; RT-PCR; Vigna radiata
Subjects: purple acid phosphatase; seedling development; mungbean; gene expression; RACE; RT-PCR; amino acid sequences; phylogenetic tree
Species: Vigna rediata; Vigna radiata
Received: December 27, 2011; Accepted: August 10, 2012; Published: June 1, 2013Show citation
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References
- Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSIBLAST: a new generation of protein database search program. - Nucl. Acids Res. 25: 3389-3402, 1997. Go to original source...
- Altschul, S.F., Wootton, J.C., Gertz, E.M., Agarwala, R., Morgulis, A., Schäffer, A.A., Yu, Y.K.: Protein database searches using compositionally adjusted substitution matrices. - FEBS J. 272: 5101-5109, 2005. Go to original source...
- Azeke, M.A., Egielewa, S.J., Eigbogbo, M.U., Ihimire, I.G.: Effect of germination on the phytase activity, phytate and total phosphorus contents of rice (Oryza sativa), maize (Zea mays), millet (Panicum miliaceum), sorghum (Sorghum bicolor) and wheat (Triticum aestivum). - J. Food Sci. Technol. 48: 724-729, 2011. Go to original source...
- Dellaporta, S.L., Wood, J., Hicks, J.B.: A plant DNA minipreparation: version II. - Plant mol. Biol. Rep. 4: 19-21, 1990.
- Dionisio, G., Madsen, C.K., Holm, P.B., Welinder, K.G., Jørgensen, M., Stoger, E., Arcalis, E., Pedersen, H.B.: Cloning and Characterization of purple acid phosphatase phytases from wheat (Triticum aestivum L.), barley (Hordeum vulgare L.), maize (Zea maize L.) and rice (Oryza sativa L.). - Plant Physiol. 156: 1087-1100, 2011. Go to original source...
- Edgar, R.C.: MUSCLE: multiple sequence alignment with high accuracy and high throughput. - Nucl. Acids Res. 32: 1792-1797, 2004. Go to original source...
- Emanuelsson, O., Nielsen, H., Brunak, S., Von Heijne, G.: Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. - J. mol. Biol. 300: 1005-1016, 2000. Go to original source...
- Greiner, R., Jany, K.D., Alminger, M.L.: Identification and properties of myo-inositol hexakisphosphate phosphohydrolase (phytase) from barley (Hordeum Vulgare). - J. Cereal Sci. 31: 127-139, 2000. Go to original source...
- Greiner, R., Muzquiz, M., Burbano, C., Cuadrado, C., Pedrosa, M.M., Goyoaga, C.: Purification and characterization of a phytase from germinated fababeans (Vicia faba var. Alameda). - J. agr. Food Chem. 49: 2234-2240, 2001. Go to original source...
- Hegeman, C.E., Grabau, E.A.: A novel phytase with sequence similarity to purple acid phosphatases is expressed in cotyledons of germinating soybean seedlings. - Plant Physiol. 126: 1598-1608, 2001. Go to original source...
- Jordan, G.E., Piel, W.H.: PhyloWidget: web-based visualizations for the tree of life. - Bioinformatics 24: 1641-1642, 2008. Go to original source...
- Kaida, R., Ono, S.K., Kamada, H., Okuyama, H., Syono, K., Kaneko, S.T.: Isolation and characterization of four cell wall purple acid phosphatase genes from tobacco cells. - Biochim. biophys. Acta 1625: 134-140, 2003. Go to original source...
- Koonin, E.V.: Conserved sequence pattern in a wide variety of phosphoesterases. - Protein Sci. 3: 356-358, 1994. Go to original source...
- Kumar, V., Sinha, A.K., Makkar, H.P.S., Becker, K.: Dietary roles of phytate and phytase in human nutrition: a review. - Food Chem. 120: 945-959, 2010. Go to original source...
- Kyriakidis, N.B., Panayotou, M.G., Stavropoulou, A., Athanasopoulos, P.: Increase in phytase activity and decrease in phytase during germination of four common legumes. - Biotechnol. Lett. 20: 475-478, 1998. Go to original source...
- Laboure, A.M., Gagnon, J., Lescure, A.M.: Purification and characterization of a phytase (myo-inositol-hexakisphosphate phosphohydrolase) accumulated in maize (Zea mays) seedlings during germination. - Biochem. J. 295: 413-419, 1993. Go to original source...
- Liang, C., Tian, J., Lam, H.M., Lim, B.L., Yan, X., Liao, H.: Biochemical and molecular characterization of PvPAP3, a novel purple acid phosphatase isolated from common bean enhancing extracellular ATP utilization. - Plant Physiol. 152: 854-865, 2010. Go to original source...
- Liao, H., Wong, F.L., Phang, T.H., Cheung, M.Y., Francisca Li, W.Y., Shao, G., Yan, X., Lam, H.M.: GmPAP3, a novel purple acid phosphatase-like gene in soybean induced by NaCl stress but not phosphorus deficiency. - Gene 38: 103-111, 2003. Go to original source...
- Lohse, D.L., Denu, J.M., Dixon, J.E.: Insights derived from the structures of the Ser/Thr phosphatases calcineurin and protein phosphatase 1. - Structure 3: 987-990, 1995. Go to original source...
- Mandal, N.C., Biswas, B.B.: Metabolism of inositol phosphates: I. Phytase synthesis during germination in cotyledons of mung beans, Phaseolus aureus. - Plant Physiol. 45: 4-7, 1970. Go to original source...
- Maugenest, S., Martinez, I., Godin, B., Perez, P., Lescure, A.: Structure of two maize phytase genes and their spatiotemporal expression during seedling development. - Plant mol. Biol. 39: 503-514, 1999. Go to original source...
- Maugenest, S., Martinez, I., Lescure, A.M.: Cloning and characterization of a cDNA encoding a maize seedling phytase. - Biochem. J. 322: 511-517, 1997. Go to original source...
- Nicholas, K.B., Nicholas, H.B, Deerfield, D.W.: GeneDoc: analysis and visualization of genetic variation. - Embnew. News 4: 14, 1997.
- Nielsen, H., Engelbrecht, J., Brunak, S., Von Heijne, G.: Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. - Protein Engn. 10: 1-6, 1997. Go to original source...
- Olczak, M., Morawiecka, B., Watorek. W.: Plant purple acid phosphatase - genes, structures and biological function. - Acta biochim. pol. 50: 1245-56, 2003.
- Prattley, C.A., Stanley, D.W.: Protein-phytate interactions in soybean: I. Localization of phytate in protein bodies and globoids. - J. Food Biochem. 6: 243-253, 1982. Go to original source...
- Petersen, T.N., Brunak, S., Von Heijne, G., Nielsen, H.: SignalP 4.0: discriminating signal peptides from transmembrane regions. - Nature Methods 8: 785-786, 2011. Go to original source...
- Saitou, N., Nei, M.: The neighbor - joining method: a new method for reconstructing phylogenetic trees. - Mol. Biol. Evol. 4: 406-425, 1987.
- Salzman, R.A., Fujita, T., Salzman, K.Z., Hasegawa, P.M., Bressan, R.A.: An improved RNA isolation method for plant tissue containing high of phenolic compounds or carbohydrates. - Plant mol. Biol. 17: 11-17, 1999. Go to original source...
- Sträter, N., Klabunde, T., Tucker, P., Witzel, H., Krebs, B.: Crystal-structure of a purple acid phosphatase containing a dinuclear Fe (III)-Zn (II) active site. - Science 268: 1489-1492, 1995. Go to original source...
- Tamura, K.., Peterson, D., Peterson, N., Stecher, G., Nei, M., Kumar, S.: MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. - Mol. Biol. Evol. 28: 2731-2739, 2011. Go to original source...
- Xiao, K., Harrison, M., Wang, Z.Y.: Cloning and characterization of a novel purple acid phosphatase gene (MtPAP1) from Medicago truncatula Barrel Medic. - J. Integr. Plant Biol. 48: 204-211, 2006a. Go to original source...
- Xiao, K., Zhang, J.H., Harrison, M., Wang, Z.Y.: Ectopic expression of a phytase gene from Medicago truncatula Barrel Medic enhances phosphorus absorption in plants. - J. Integr. Plant Biol. 48: 35-43, 2006b. Go to original source...
- Yoneyama, T., Shiozawa, M., Nakamura, M., Suzuki, T., Sagane, Y., Katoh, Y., Watanabe, T., Ohyama, T.: Characterization of a novel acid phosphatase from embryonic axes of kidney bean exhibiting vanadatedependent chloroperoxidase activity. - J. biol. Chem. 279: 37477-37484, 2004. Go to original source...
- Zhou, S., Clemens, J.C., Stone, R.L., Dixon, J.E.: Mutational analysis of a Ser/Thr phosphatase. - J. biol. Chem. 269: 26234-26238, 1994.