Biologia plantarum 64: 717-724, 2020 | DOI: 10.32615/bp.2020.102

Transcriptome-sequencing analyses reveal flower color formation in Strelitzia reginae

R.H. FAN, B. LIN, N.Y. FANG, X.X. YE, M.L. HUANG*, H.Q. ZHONG*
Institute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, 350013 Fujian, P.R. China

Strelitzia reginae is a popular cut flower that has blue petals and orange sepals. Flower color is an important plant trait; however, little is known about its molecular mechanisms in S. reginae. In this study, cDNA libraries were constructed for blue petals and orange sepals of S. reginae. A total of 75 487 unigenes were obtained from transcriptome sequencing and de novo assembly, of which 41.86 % were annotated by public databases. Ultra-high performance liquid chromatography analysis revealed that anthocyanins were the main pigment in blue petals, and that carotenoids controled pigment formation in the orange sepals. Using a system analysis-based approach, 73 and 29 candidate genes related to anthocyanin and carotenoid biosyntheses were identified, respectively. Among these, chalcone synthase 2, chalcone isomerase 1, flavanone 3-hydroxylase 1, flavonoid 3',5'-hydroxylase 1, dihydroflavonol 4-reductase 1, anthocyanidin synthase 1, and anthocyanidin 3-O-glucosyltransferase 1 were considered to be important in regulating the formation of blue petals, and phytoene synthase 1, phytoene desaturaser 1, ζ-carotene desaturase 1, lycopene β-cyclase 3, and β-carotene hydroxylase 2 might play important roles in orange sepal formation. This study improves our understanding of flower color and provides evidence for future molecular breeding of ornamental plants based on flower color modifications.

Keywords: anthocyanins, carotenoids, transcriptome sequencing.

Received: March 3, 2020; Revised: July 2, 2020; Accepted: July 7, 2020; Published online: October 12, 2020Show citation

ACS AIP APA ASA Harvard Chicago IEEE ISO690 MLA NLM Turabian Vancouver
FAN, R.H., LIN, B., FANG, N.Y., YE, X.X., HUANG, M.L., & ZHONG, H.Q. (2020). Transcriptome-sequencing analyses reveal flower color formation in Strelitzia reginae . Biologia plantarum64, 717-724. doi: 10.32615/bp.2020.102.
Download citation

Supplementary files

Download fileFan6448_Suppl_PublR.pdf

File size: 287.7 kB

References

  1. Anders, S., Huber, W.: Differential expression analysis for sequence count data. - Genome Biol. 11: R106, 2010. Go to original source...
  2. Brugliera, F., Tao, G.Q., Tems, U., Kalc, G., Mouradova, E., Price, K., Stevenson, K., Nakamura, N., Stacey, I., Katsumoto, Y.: Violet/blue chrysanthemums-metabolic engineering of the anthocyanin biosynthetic pathway results in novel petal colors. - Plant Cell Physiol. 54: 1696-1710, 2013. Go to original source...
  3. Chandler, S., Tanaka, Y.: Genetic modification in floriculture. - Crit. Rev. Plant Sci. 26: 169-197, 2007. Go to original source...
  4. Chandler, S.F., Brugliera, F.: Genetic modification in floriculture. - Biotechnol. Lett. 33: 207-214, 2011. Go to original source...
  5. Chung, P.J., Jung, H., Jeong, D.H.: Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice. - BMC Genomics 17: 563, 2016. Go to original source...
  6. Finn, R.D., Clements, J., Eddy, S.R.: HMMER web server: interactive sequence similarity searching. - Nucl. Acids Res. 39: W29-37, 2011. Go to original source...
  7. Grabherr, M.G., Haas, B.J., Yassour, M., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L.: Full-length transcriptome assembly from RNA-Seq data without a reference genome. - Nat. Biotechnol. 29: 644-652, 2011. Go to original source...
  8. Grotewold, E.: The genetics and biochemistry of floral pigments. - Annu. Rev. Plant Biol. 57: 761-780, 2006. Go to original source...
  9. Gotz, S., Garcia-Gomez, J.M., Terol, J., Terol, J., Williams, T.D., Nagaraj, S.H., Nueda, M.J., Robles, M., Talón, M., Dopazo, J., Conesa, A.: High-throughput functional annotation and data mining with the Blast2GO suite. - Nucl. Acids Res. 36: 3420-3435, 2008. Go to original source...
  10. Hirschberg, J.: Carotenoid biosynthesis in flowering plants. - Curr. Opin. Plant Biol. 4: 210-218, 2001. Go to original source...
  11. Iwashina, T.: The structure and distribution of the flavonoids in plants. - J. Plant Res. 113: 287-299, 2000. Go to original source...
  12. Johnson, E.T., Ryu, S., Yi, H.K., Shin, B., Cheong, H., Choi, G.: Alteration of a single amino acid changes the substrate specificity of dihydroflavonol 4-reductase. - Plant J. 25: 325-333, 2001. Go to original source...
  13. Katsumoto, Y., Fukuchi-Mizutani, M., Fukui, Y., Brugliera, F., Holton, T.A., Karan, M., Nakamura, N.: Engineering of the rose flavonoid biosynthetic pathway successfully generated blue-hued flowers accumulating delphinidin. - Plant Cell Physiol. 48: 1589-1600, 2007. Go to original source...
  14. Kwenda, S., Birch, P.R., Moleleki, L.N.: Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection. - BMC Genomics 17: 614, 2016. Go to original source...
  15. Li, B., Dewey, C.N.: RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. - BMC Bioinformatics 12: 323, 2011. Go to original source...
  16. Lou, Q., Liu, Y.L., Qi, Y.Y., Jiao, S.Z., Tian, F.F., Jiang, L., Wang, Y.J.: Transcriptome sequencing and metabolite analysis reveals the role of delphinidin metabolism in flower colour in grape hyacinth. - J. exp. Bot. 65: 3157-3164, 2014. Go to original source...
  17. Miyajima, I., Uemoto, S., Sakata, Y., Arisumi, K., Toki, K.: Yellow pigment of Camellia chrysantha flowers. - J. Fac. Agr. Kyushu Univ. 29: 257-266, 1985.
  18. Noda, N., Aida, R., Kishimoto, S., Ishiguro, K., Fukuchi-Mizutani, M., Tanaka, Y., Ohmiya, A.: Genetic engineering of novel bluer-colored chrysanthemums produced by accumulation of delphinidin-based anthocyanins. - Plant Cell Physiol. 54: 1684-1695, 2013. Go to original source...
  19. Ohmiya, A.: Qualitative and quantitative control of carotenoid accumulation in flower petals. - Sci. Hort. 163: 10-19, 2013. Go to original source...
  20. Ohmiya, A., Kishimoto, S., Aida, R., Yoshioka, S., Sumitomo, K.: Carotenoid cleavage dioxygenase (CmCCD4a) contributes to white color formation in chrysanthemum petals. - Plant Physiol. 142: 1193-1201, 2006. Go to original source...
  21. Paiva, P.D.O., Paiva, R., Pasqual, M.: In vitro establishment of Strelitzia (Strelitzia reginae Banks). - Ciênc. agrotec. 28: 1031-1037, 2004. Go to original source...
  22. Pandurangaiah, S., Ravishankar, K.V., Shivashankar, K.S., Sadashiva, A.T., Pillakenchappa, K., Narayanan, S.K.: Differential expression of carotenoid biosynthetic pathway genes in two contrasting tomato genotypes for lycopene content. - J. Biosci. 41: 257-264, 2016. Go to original source...
  23. Rezaei, M.K., Deokar, A., Tar'an, B.: Identification and expression analysis of candidate genes involved in carotenoid biosynthesis in chickpea seeds. - Front. Plant Sci. 7: 1867, 2016.
  24. Sasaki, N., Nakayama, T.: Achievements and perspectives in biochemistry concerning anthocyanin modification for blue flower coloration. - Plant Cell Physiol. 56: 28-40, 2015. Go to original source...
  25. Tanaka, Y., Sasaki, N., Ohmiya, A.: Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids. - Plant J. 54: 733-749, 2008. Go to original source...
  26. Tanaka, Y., Tsuda, S., Kusumi, T.: Metabolic engineering to modify flower color. - Plant Cell Physiol. 39: 1119-1126, 1998. Go to original source...
  27. Tanaka, Y.: Flower colour and cytochromes P450. - Phytochem. Rev. 5: 283-291, 2006. Go to original source...
  28. Trapnell, C., Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., Baren, M.J., Salzberg, S.L., Wold, B.J., Pachter, L.: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. - Nat .Biotechnol. 28: 511-515, 2010. Go to original source...
  29. Weiss, M.R.: Floral color change: a widespread functional convergence. - Amer. J. Bot. 82: 167-185, 1995. Go to original source...
  30. Wu, Q., Wu, J., Li, S.S., Zhang, H.J., Feng, C.Y., Yin, D.D., Wu, R.Y., Wang, L.S.: Transcriptome sequencing and metabolite analysis for revealing the blue flower formation in waterlily. - BMC Genomics 17: 897, 2016. Go to original source...
  31. Yamagishi, M., Kishimoto, S., Nakayama, M.: Carotenoid composition and changes in expression of carotenoid biosynthetic genes in tepals of Asiatic hybrid lily. - Plant Breed. 129: 100-107, 2010. Go to original source...
  32. Yang, R.Z., Wei, X.L., Gao, F.F., Wang, L.S., Zhang, H.J., Xu, Y.J., Li, C.H., Ge, Y.X., Zhang, J.J., Zhang, J.: Simultaneous analysis of anthocyanins and flavonols in petals of lotus (Nelumbo) cultivars by high-performance liquid chromatography-photodiode array detection/electrospray ionization mass spectrometry. - J. Chromatogr. A 1216: 106-112, 2009.
  33. Yang, L.E., Huang, X.Q., Lu, Q.Q., Zhu, J.Y., Lu, S.: Cloning and characterization of the geranylgeranyl diphosphate synthase (GGPS) responsible for carotenoid biosynthesis in Pyropia umbilicalis. - J. appl. Phycol. 28: 671-678, 2016. Go to original source...
  34. Zhang, Y.Z., Cheng, Y.W., Ya, H.Y., Xu, S., Han, J.: Transcriptome sequencing of purple petal spot region in tree peony reveals differentially expressed anthocyanin structural genes. - Front. Plant Sci. 6: 964, 2015. Go to original source...
  35. Zhao, D.Q., Jiang, Y., Ning, C.L., Meng, J., Lin, S., Ding, W., Tao, J.: Transcriptome sequencing of a chimaera reveals coordinated expression of anthocyanin biosynthetic genes mediating yellow formation in herbaceous peony (Paeonia lactiflora Pall.). - BMC Genomics 15: 689, 2014. Go to original source...
  36. Zhou, X.: Cloning and Function Research of Pigment Genes from Camellia nitidissima. - Dissertation, Chinese Academy of Forestry, Beijing 2012.