Publikace – Výpočetní neurovědy

Článek v odborném periodiku

2020

Bočková, M., Lamoš, M., Klimeš, Petr, Jurák, Pavel, Halámek, Josef, Goldemundová, S., Baláž, M., Rektor, I. Suboptimal response to STN-DBS in Parkinson's disease can be identified via reaction times in a motor cognitive paradigm. Journal of Neural Transmission. 2020, 127(12), 1579-1588. ISSN 0300-9564. ABSTRACT

Cimbálník, J., Pail, M., Klimeš, Petr, Trávníček, V., Roman, R., Vajcner, A., Brázdil, M. Cognitive Processing Impacts High Frequency Intracranial EEG Activity of Human Hippocampus in Patients With Pharmacoresistant Focal Epilepsy. Frontiers in Neurology. 2020, 11(OCT), 578571. ISSN 1664-2295. ABSTRACT

Nejedlý, Petr, Křemen, V., Sladký, V., Cimbálník, J., Klimeš, Petr, Plešinger, Filip, Mivalt, F., Trávníček, V., Viščor, Ivo, Pail, M., Halámek, Josef, Brinkmann, B., Brázdil, M., Jurák, Pavel, Worrell, G. A. Multicenter intracranial EEG dataset for classification of graphoelements and artifactual signals. Scientific Data. 2020, 7(1), 179. ISSN 2052-4463. ABSTRACT

Peter-Derex, L., Klimeš, Petr, Latreille, V., Bouhadoun, S., Dubeau, F., Frauscher, B. Sleep Disruption in Epilepsy: Ictal and Interictal Epileptic Activity Matter. Annals of Neurology. 2020, 88(5), 907-920. ISSN 0364-5134. ABSTRACT

Strýček, O., Lamoš, M., Klimeš, Petr, Rektor, I. Cognitive task-related functional connectivity alterations in temporal lobe epilepsy. Epilepsy and Behavior. 2020, 112(NOV), 107409. ISSN 1525-5050. ABSTRACT

2019

Brázdil, M., Doležalová, I., Koriťáková, E., Chládek, Jan, Romani, R., Pail, M., Jurák, Pavel, Shaw, D. J., Chrastina, J. EEG Reactivity Predicts Individual Efficacy of Vagal Nerve Stimulation in Intractable Epileptics. Frontiers in Neurology.  2019, 10(MAY), 392. ISSN 1664-2295. ABSTRACT

Cimbálník, J., Klimeš, Petr, Sladký, V., Nejedlý, Petr, Jurák, Pavel, Pail, M., Roman, R., Daniel, P., Guragain, H., Brinkmann, B., Brázdil, M., Worrell, G. A. Multi-feature localization of epileptic foci from interictal, intracranial EEG. Clinical Neurophysiology. 2019, 130(10), 1945-1953. ISSN 1388-2457. ABSTRACT

Klimeš, Petr, Cimbálník, J., Brázdil, M., Hall, J., Dubeau, F., Gotman, J., Frauscher, B. NREM sleep is the state of vigilance that best identifies the epileptogenic zone in the interictal electroencephalogram. Epilepsia. 2019, 60(12), 2404-2415. ISSN 0013-9580. ABSTRACT

Nejedlý, Petr, Křemen, V., Sladký, V., Nasseri, M., Guragain, H., Klimeš, Petr, Cimbálník, J., Varatharajah, Y., Brinkmann, B., Worrell, G. A. Deep-learning for seizure forecasting in canines with epilepsy. Journal of Neural Engineering.  2019, 16(3), 036031. ISSN 1741-2560. ABSTRACT

Nejedlý, Petr, Křemen, V., Sladký, V., Cimbálník, J., Klimeš, Petr, Plešinger, Filip, Viščor, Ivo, Pail, M., Halámek, Josef, Brinkmann, B., Brázdil, M., Jurák, Pavel, Worrell, G. A. Exploiting Graphoelements and Convolutional Neural Networks with Long Short Term Memory for Classification of the Human Electroencephalogram. Scientific Reports.  2019, 9(AUG), 11383. ISSN 2045-2322. ABSTRACT

Nejedlý, Petr, Cimbálník, J., Klimeš, Petr, Plešinger, Filip, Halámek, Josef, Křemen, V., Viščor, Ivo, Brinkmann, B., Pail, M., Brázdil, M., Worell, G., Jurák, Pavel. Intracerebral EEG Artifact Identification Using Convolutional Neural Networks. Neuroinformatics.  2019, 17(2), 225-234. ISSN 1539-2791. ABSTRACT

2018

Cimbálník, J., Brinkmann, B., Křemen, VV., Jurák, Pavel, Berry, B., Van Gompel, J., Stead, M., Worrell, G. A. Physiological and pathological high frequency oscillations in focal epilepsy. Annals of Clinical and Translational Neurology.  2018, 5(9), 1062-1076. ISSN 2328-9503. ABSTRACT

Klimeš, Petr, Jurák, Pavel, Halámek, Josef, Roman, R., Chládek, Jan, Brázdil, M. Changes in connectivity and local synchrony after cognitive stimulation Intracerebral EEG study. Biomedical Signal Processing and Control. 2018, 45(AUG), 136-143. ISSN 1746-8094. ABSTRACT

Minks, E., Jurák, Pavel, Chládek, Jan, Minksová, A., Hummelová, Z., Halámek, Josef, Chrastina, J., Ovesná, P., Bareš, M. Are the subthalamic nucleus, internal globus pallidus and thalamus involved in thinking? Basal Ganglia. 2018, 14(NOV), 22-30. ISSN 2210-5336. ABSTRACT

Nejedlý, Petr, Plešinger, Filip, Halámek, Josef, Jurák, Pavel. CudaFilters: A SignalPlant library for GPU-accelerated FFT and FIR filtering. Software-Practice & Experience.  2018, 48(1), 3-9. ISSN 0038-0644. ABSTRACT

2017

Bočková, M.; Chládek, Jan; Jurák, Pavel; Halámek, Josef; Rapcsak, S.Z.; Baláž, M.; Chrastina, J.; Rektor, I. Oscillatory reactivity to effortful cognitive processing in the subthalamic nucleus and internal pallidum: a depth electrode EEG study. Journal of Neural Transmission, 2017, vol. 124, iss. 7, pp. 841-852. ISSN 0300-9564.  ABSTRACT

Brázdil, M.; Pail, M.; Halámek, Josef; Plešinger, Filip; Cimbálník, J.; Roman, R.; Klimeš, Petr; Daniel, P.; Chrastina, J.; Brichtová, E.; Rektor, I.; Worrell, G. A.; Jurák, Pavel. Very High-Frequency Oscillations: Novel Biomarkers of the Epileptogenic Zone. Annals of Neurology, 2017, vol. 82, iss. 2, pp. 299-310. ISSN 0364-5134.  ABSTRACT

2016

Czekóová, K.; Shaw, D. J.; Urbánek, Tomáš; Chládek, Jan; Lamoš, M.; Roman, R.; Brázdil, M. What’s the meaning of this? A behavioral and neurophysiological investigation into the principles behind the classification of visual emotional stimuli. Psychophysiology. 2016, vol. 53, iss. 8, pp. 1203-1216. ISSN 0048-5772. ABSTRACT

Klimeš, Petr; Duque, J. J.; Brinkmann, B.; Gompel, J.V.; Stead, M.; St Louis, E.K.; Halámek, Josef; Jurák, Pavel; Worrell, G. A. The functional organization of human epileptic hippocampus. Journal of Neurophysiology. 2016, vol. 115, iss. 6, pp. 3140-3145. ISSN 0022-3077. ABSTRACT

Rektor, I.; Doležalová, I.; Chrastina, J.; Jurák, Pavel; Halámek, Josef; Baláž, M.; Brázdil, M. High-Frequency Oscillations in the Human Anterior Nucleus of the Thalamus. Brain Stimulation. 2016, vol. 9, iss. 4, pp. 629-631. ISSN 1935-861X. ABSTRACT

2015

Bočková, M.; Chládek, Jan; Jurák, Pavel; Halámek, Josef; Štillová, K.; Baláž, M.; Chrastina, J.; Rektor, I. Complex Motor–Cognitive Factors Processed in the Anterior Nucleus of the Thalamus: An Intracerebral Recording Study. Brain Topography. 2015, vol. 28, iss. 2, pp. 269-278. ISSN 0896-0267. ABSTRACT

Brázdil, M.; Cimbálník, J.; Roman, R.; Shaw, D. J.; Stead, M.; Daniel, P.; Jurák, Pavel; Halámek, Josef. Impact of cognitive stimulation on ripples within human epileptic and non-epileptic hippocampus. BMC Neuroscience. 2015, vol. 16, JULY 25, 47:1-9. ISSN 1471-2202. ABSTRACT

Štillová, K.; Jurák, Pavel; Chládek, Jan; Chrastina, J.; Halámek, Josef; Bočková, M.; Goldemundová, S.; Říha, I.; Rektor, I. The Role of Anterior Nuclei of the Thalamus: A Subcortical Gate in Memory Processing: An Intracerebral Recording Study. PLoS ONE. 2015, vol. 10, iss. 11, e140778:1-13. E-ISSN 1932-6203. ABSTRACT

2014

Bob, P.; Roman, R.; Světlák, M.; Kukleta, M.; Chládek, Jan; Brázdil, M. Preictal Dynamics of EEG Complexity in Intracranially Recorded Epileptic Seizure. Medicine. 2014, vol. 93, iss. 23, el151:1-4. ISSN 0025-7974. ABSTRACT

Kára, J., Leinveber, P., Vlašín, M., Jurák, Pavel, Novák, M., Novák, Z., Chrastina, J., Czechowicz, K., Bělehrad, M., Asirvatham, S.J. Endovascular brain intervention and mapping in a dog experimental model using magnetically-guided micro-catheter technology. Biomedical Papers. 2014, 158(2), 221-226. ISSN 1213-8118. ABSTRACT

Minks, E.; Jurák, Pavel; Chládek, Jan; Chrastina, J.; Halámek, Josef; Shaw, D. J.; Bareš, M. Mismatch negativity-like potential (MMN-like) in the subthalamic nuclei in Parkinson’s disease patients. Journal of Neural Transmission. 2014, vol. 121, iss. 12, pp. 1507-1522. ISSN 0300-9564. ABSTRACT

Rusnáková-Aulická, Š.; Jurák, Pavel; Chládek, Jan; Daniel, P.; Halámek, Josef; Baláž, M.; Bočková, M.; Chrastina, J.; Rektor, I. Subthalamic nucleus involvement in executive functions with increased cognitive load: a subthalamic nucleus and anterior cingulate cortex depth recording study. Journal of Neural Transmission. 2014, vol. 121, iss. 10, pp. 1287-1296. ISSN 0300-9564. ABSTRACT

2013

Bočková, M.; Chládek, Jan; Šímová, L.; Jurák, Pavel; Halámek, Josef; Rektor, I. Oscillatory changes in cognitive networks activated during a three-stimulus visual paradigm: An intracerebral study. Clinical Neurophysiology. 2013, vol. 124, 2 February, pp. 283-291. ISSN 1388-2457. ABSTRACT

Brázdil, M.; Janeček, Jiří; Klimeš, Petr; Mareček, R.; Roman, R.; Jurák, Pavel; Chládek, Jan; Daniel, P.; Rektor, I.; Halámek, Josef; Plešinger, Filip; Jirsa, V. On the time course of synchronization patterns of neuronal discharges in the human brain during cognitive tasks. PLoS ONE. 2013, vol. 8, iss. 5, e63293:1-9. E-ISSN 1932-6203. ABSTRACT

Pail, M.; Halámek, Josef; Daniel, P.; Kuba, R.; Tyrlíková, I.; Chrastina, J.; Jurák, Pavel; Rektor, I.; Brázdil, M. Intracerebrally recorded high frequency oscillations: Simple visual assessment versus automated detection. Clinical Neurophysiology. 2013, vol. 124, iss. 10, pp. 1935-1942. ISSN 1388-2457. ABSTRACT

Roman, R.; Brázdil, M.; Chládek, Jan; Rektor, I.; Jurák, Pavel; Světlák, M.; Damborská, A.; Shaw, D. J.; Kukleta, M. Hippocampal Negative Event-Related Potential Recorded in Humans During a Simple Sensorimotor Task Occurs Independently of Motor Execution. Hippocampus. 2013, vol. 23, iss. 12, pp. 1337-1344. ISSN 1050-9631. ABSTRACT

Světlák, M.; Bob, P.; Roman, R.; Ježek, S.; Damborská, A.; Chládek, Jan; Shaw, D. J.; Kukleta, M. Stress-induced alterations of left-right electrodermal activity coupling indexed by pointwise transinformation. Physiological Research. 2013, vol. 62, iss. 6, pp. 711-719. ISSN 0862-8408. ABSTRACT

Štillová, K.; Jurák, Pavel; Chládek, Jan; Halámek, Josef; Telecká, S.; Rektor, I. The posterior medial cortex is involved in visual but not in verbal memory encoding processing: an intracerebral recording study. Journal of Neural Transmission. 2013, vol. 120, iss. 3, pp. 391-397. ISSN 0300-9564. ABSTRACT

2012

Damborská, A.; Brázdil, M.; Rektor, I.; Janoušová, E.; Chládek, Jan; Kukleta, M. Late Divergence of Target and Nontarget ERPs in a Visual Oddball Task. Physiological Research. 2012, vol. 61, iss. 3, pp. 307-318. ISSN 0862-8408. ABSTRACT

Klimeš, Petr; Janeček, Jiří; Jurák, Pavel; Halámek, Josef; Chládek, Jan; Brázdil, M. Intracranial EEG Connectivity Analysis and Result Imaging. International Journal of Bioscience, Biochemistry and Bioinformatics. 2012, vol. 2, iss. 4, pp. 275-279. ISSN 2010-3638. ABSTRACT

2011

Bočková, M.; Chládek, Jan; Jurák, Pavel; Halámek, Josef; Baláž, M.; Rektor, I. Involvement of the subthalamic nucleus and globus pallidus internus in attention. Journal of Neural Transmission. 2011, vol. 118, iss. 8, s. 1235-1245. ISSN 0300-9564. ABSTRACT

Rektor, I.; Kuba, R.; Brázdil, M.; Halámek, Josef; Jurák, Pavel. Ictal and peri-ictal oscillations in the human basal ganglia in temporal lobe epilepsy. Epilepsy and Behavior. 2011, vol. 20, iss. 3, pp. 512-517. ISSN 1525-5050. ABSTRACT

Rusnáková, S.; Daniel, P.; Chládek, Jan; Jurák, Pavel; Rektor, I. The Executive Functions in Frontal and Temporal Lobes: A Flanker Task Intracerebral Recording Study. Journal of Clinical Neurophysiology. 2011, vol. 28, iss. 1, pp. 30-35. ISSN 0736-0258. ABSTRACT

2010

Brázdil, M.; Halámek, Josef; Jurák, Pavel; Daniel, P.; Kuba, R.; Chrastina, J.; Novák, Z.; Rektor, I. Interictal high-frequency oscillations indicate seizure onset zone in patients with focal cortical dysplasia. Epilepsy Research. 2010, vol. 90, 1-2, pp. 28-32. ISSN 0920-1211. ABSTRACT

Kapitola v monografii

2018

Brázdil, M., Jurák, Pavel, Rektor, I. Intracranial event-related potentials. In: Lhatoo, Samden D., Kahane, Philippe, Lürdes, Hans O., eds. Invasive Studies of the Human Epileptic Brain: Principles and Practice.  1. Oxford: Oxford University Press, 2018, s. 412-430. ISBN 9780198714668.

Konferenční příspěvek – zahraniční konference

2020

Plešinger, Filip, Halámek, Josef, Chládek, Jan, Jurák, Pavel, Doležalová, I., Chrastina, J., Brázdil, M. Response to Vagal Stimulation by Heart-rate Features in Drug-resistant Epileptic Patients. In: 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). Proceedings. New York: IEEE, 2020, s. 46-49. ISBN 978-172811990-8. ISSN 1557-170X.

2015

Klimeš, Petr; Duque, J. J.; Jurák, Pavel; Halámek, Josef; Worell, G. A. Connectivity of epileptic brain regions in wake and sleep. In: Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE. Piscataway: IEEE, 2015, S. 2191-2194. ISBN 978-1-4244-9270-1. [EMBC. Annual International Conference of the IEEE Engineering in Medicine and Biology Society /37./, Milano, 25.08.2015-29.08.2015, IT].

Klimeš, Petr; Duque, J. J.; Cimbálník, J.; Jurák, Pavel; Halámek, Josef; Worell, G. A. Connectivity of Regions Generating Epileptic Seizures. In: BACI 2015. 2nd International Conference on Basic and Clinical Multimodal Imaging. Utrecht: Universiteit Utrecht, 2015. [BACI 2015. International Conference on Basic and Clinical Multimodal Imaging /2./, Utrecht, 01.09.2015-05.09.2015, NL].

2013

Chládek, Jan; Brázdil, M.; Halámek, Josef; Plešinger, Filip; Jurák, Pavel. Statistical significance of task related deep brain EEG dynamic changes in the time-frequency domain. In: 35th Annual International Conference of the IEEE (EMBC 2013) - Conference proceedings. Piscataway: IEEE Service Center, 2013, S. 1025-1028. ISBN 978-1-4577-0216-7. ISSN 1557-170X. [Annual International Conference of the IEEE Engineering in Medicine and Biology Society /35./, Osaka, 03.07.2013-07.07.2013, JP].

Klimeš, Petr; Janeček, Jiří; Jurák, Pavel; Halámek, Josef; Chládek, Jan; Brázdil, M. Analysis of evoked deep brain connectivity. In: 35th Annual International Conference of the IEEE (EMBC 2013) - Conference proceedings. Piscataway: IEEE Service Center, 2013, S. 4358-4361. ISBN 978-1-4577-0216-7. ISSN 1557-170X. [Annual International Conference of the IEEE Engineering in Medicine and Biology Society /35./, Osaka, 03.07.2013-07.07.2013, JP].

Software

2015

Plešinger, Filip, Klimeš, Petr, Halámek, Josef, Jurák, Pavel. ViziProbe [software]. Ústav přístrojové techniky AV ČR, v. v. i., 2015.