Publications in 2021

  • Radek Janča, Alena Jahodová, Jaroslav Hlinka, Petr Jezdík, Lenka Svobodová, Martin Kudr, Adam Kalina, Petr Marusič, Pavel Kršek, Přemysl Jiruška. Ictal gamma-band interactions localize ictogenic nodes of the epileptic network in focal cortical dysplasia. Clinical Neurophysiology, 132(8), 1927-1936, 2021. (link)
  • Luigi Caputi, Anna Pidnebesna, Jaroslav Hlinka. Promises and pitfalls of topological data analysis for brain connectivity analysis. NeuroImage 118254, 2021. (link)
  • Alberto Pérez-Cervera, Jaroslav Hlinka. Perturbations both trigger and delay seizures due to generic properties of slow-fast relaxation oscillators. PLOS Computational Biology, 17(3): e1008521, 2021. (link)
  • Jan Kudlacek, Jan Chvojka, Vojtech Kumpost, Barbora Hermanovska, Antonin Posuta, John G.R.Jefferys, Matias I. Maturana, Ondrej Novak, Mark J. Cook, Jakub Otahal, Jaroslav Hlinka, Premysl Jiruska. Long-term seizure dynamics are determined by the nature of seizures and the mutual interactions between them. Neurobiology of Disease, 2021. (link)
  • Jacob Billings, Manish Saggar, Jaroslav Hlinka, Shella Keilholz, and Giovanni Petri. Simplicial and topological descriptions of human brain dynamics. Network Neuroscience, (Just Accepted):1–32, 2021
  • Stanislav Jiricek, Vlastimil Koudelka, Jaroslav Lacik, Cestmir Vejmola, David Kuratko, Daniel K. Wojcik, Zbynek Raida, Jaroslav Hlinka, and Tomas Palenicek. Electrical source imaging in freely moving rats: Evaluation of a 12-electrode cortical electroencephalography system. Frontiers in Neuroinformatics, 14:68, 2021
  • Pavel Sanda, Paola Malerba, Xi Jiang, Giri P Krishnan, Jorge Gonzalez-Martinez, Eric Halgren, Maxim Bazhenov. Bidirectional Interaction of Hippocampal Ripples and Cortical Slow Waves Leads to Coordinated Spiking Activity During NREM Sleep. Cerebral Cortex, 31:324-340, 2021 (link)

Publications in 2020

  • Marek Piorecky, Vlastimil Koudelka, Eva Miletinova, Jitka Buskova, Jan Strobl, Jiri Horacek, Martin Brunovsky, Stanislav Jiricek, Jaroslav Hlinka, David Tomecek, et al. Simultaneous fmri-eeg-based characterisation of nrem parasomnia disease: Methods and limitations. Diagnostics, 10(12):1087, 2020
  • Moritz Gerster, Rico Berner, Jakub Sawicki, Anna Zakharova, Antonı́n Škoch, Jaroslav Hlinka, Klaus Lehnertz, and Eckehard Schöll. Fitzhugh–nagumo oscillators on complex networks mimic epileptic-seizure-related synchronization phenomena. Chaos: An Interdisciplinary Journal of Nonlinear Science, 30(12):123130, 2020
  • Barbora Bučková, Martin Brunovský, Martin Bareš, Jaroslav Hlinka. Predicting Sex From EEG: Validity and Generalizability of Deep-Learning-Based Interpretable Classifier. Frontiers in Neuroscience, 14:7, 2020 (link)
  • Marián Kolenič, Filip Španiel, Jaroslav Hlinka, Martin Matějka, Pavel Knytl, Antonín Šebela, Jiří Renka, Tomas Hájek. Higher Body-Mass Index and Lower Gray Matter Volumes in First Episode of Psychosis. Frontiers in Psychiatry, 11:10, 2020 (link)
  • Jakub Kopal, Anna Pidnebesna, David Tomeček, Jaroslav Tintěra, Jaroslav Hlinka. Typicality of functional connectivity robustly captures motion artifacts in rs‐fMRI across datasets, atlases, and preprocessing pipelines. Wiley Online Library: Human Brain Mapping, 2020 (link)
  • Ladislav Kesner, Iveta Fajnerová, Petr Adámek, Martin Buchtı́k, Dominika Grygarová, Jaroslav Hlinka, Pavel Kozelka, Tereza Nekovářová, Filip Španiel, Jaroslav Tintěra, et al. Fusiform activity distinguishes between subjects with low and high xenophobic attitudes toward refugees. Frontiers in Behavioral Neuroscience, 14:98, 2020 (link)
  • Jakub Kořenek and Jaroslav Hlinka. Causal network discovery by iterative conditioning: Comparison of algorithms. Chaos: An Interdisciplinary Journal of Nonlinear Science, 30(1):013117, 2020 (preprint available at arXiv: link)
  • Matias I Maturana, Christian Meisel, Katrina Dell, Philippa J Karoly, Wendyl DSouza, David B Grayden, Anthony N Burkitt, Premysl Jiruska, Jan Kudlacek, Jaroslav Hlinka, et al. Critical slowing down as a biomarker for seizure susceptibility. Nature Communications, 11(1):1–12, 2020 (link)
  • Michal Hadrava and Jaroslav Hlinka. A dynamical systems approach to spectral music: Modelling the role of roughness and inharmonicity in perception of musical tension. Frontiers in Applied Mathematics and Statistics, 6:18, 2020 (link)
  • David Tomeček, Renata Androvičová, Iveta Fajnerová, Filip Děchtěrenko, Jan Rydlo, Jiřı́ Horáček, Jiřı́ Lukavskỳ, Jaroslav Tintěra, and Jaroslav Hlinka. Personality reflection in the brains intrinsic functional architecture remains elusive. PloS one, 15(6):e0232570, 2020 (link)
  • Iveta Fajnerova, David Greguš, Anna Francová, Eliška Nosková, Jana Kopřivová, Pavla Stopková, Jaroslav Hlinka, and Jiřı́ Horáček. Functional connectivity changes in obsessive-compulsive disorder correspond with interference control and obsessions severity. Frontiers in Neurology, 11:568, 2020 (link)

Publications in 2019

  • Isaura Oliver, Jaroslav Hlinka, Jakub Kopal, Jörn Davidsen, Quantifying the Variability in Resting-State Networks, Entropy 21 (9), 882, 2019 (link)
  • Benjamin Wahl, Ulrike Feudel, Jaroslav Hlinka, Matthias Wächter, Joachim Peinke, Jan A Freund, Residual Predictive Information Flow in the Tight Coupling Limit: Analytic Insights from a Minimalistic Model, Entropy 21 (10), 1010, 2019 (link)
  • Lukas Ramlow, Jakub Sawicki, Anna Zakharova, Jaroslav Hlinka, Jens Christian Claussen, and Eckehard Schöll. Partial synchronization in empirical brain networks as a model for unihemispheric sleep. EPL (Europhysics Letters), 126(5):50007, 2019 (link)
  • Benjamin Wahl, Ulrike Feudel, Jaroslav Hlinka, Matthias Wächter, Joachim Peinke, and Jan A. Freund. Residual predictive information flow in the tight coupling limit: Analytic insights from a minimalistic model. Entropy, 21(10), 2019 (link)
  • Isaura Oliver, Jaroslav Hlinka, Jakub Kopal, and Joern Davidsen. Quantifying the variability in resting-state networks. Entropy, 21(9), 2019 (link)
  • Yuliya Zaytseva, Jiřı́ Horáček, Jaroslav Hlinka, Iveta Fajnerová, Renata Androvičová, Jaroslav Tintěra, Virginio Salvi, Marie Balı́ková, Tom Hložek, Filip Španiel, and Tomáš Pálenı́ček. Cannabis-induced altered states of consciousness are associated with specific dynamic brain connectivity states. Journal of Psychopharmacology, 33(7):811–821, 2019 (link)

Publications in 2018

  • Chang, W.C. - Kudláček, Jan - Hlinka, Jaroslav - Chvojka, Jan - Hadrava, Michal - Kumpošt, Vojtěch - Powell, A. D. - Janča, R. - Maturana, M. I. - Karoly, P. J. - Freestone, D. R. - Cook, M. J. - Paluš, Milan - Otáhal, Jakub - Jefferys, J. G. R. - Jiruška, Přemysl : Loss of neuronal network resilience precedes seizures and determines the ictogenic nature of interictal synaptic perturbations, Nature Neuroscience, 21(12), 1742-1752, 2018. (link)
  • Pidnebesna, Anna, Tomeček, David, Hlinka, Jaroslav. BRAD: Software for BRain Activity Detection from hemodynamic response. Computer Methods and Programs in Biomedicine. 2018, 156, 113-119. (link)
  • Marino, M., Liu, Q., Koudelka, V., Porcaro, C., Hlinka, Jaroslav, Wenderoth, N., Mantini, D. Adaptive Optimal Basis Set for BCG Artifact Removal in Simultaneous EEG-fMRI. Scientific Reports. 2018, 8, 8902. (link)
  • Hartman, David, Hlinka, Jaroslav. Nonlinearity in Stock Networks. Chaos. 2018, 28(8), 083127. (link)
  • Hartman, David, Hladík, M. Regularity Radius: Properties, Approximation and a Not A Priori Exponential Algorithm. Electronic Journal of Linear Algebra. 2018, 33, 122-136. (link)
  • Chouzouris, T., Omelchenko, I., Zakharova, A., Hlinka, Jaroslav, Jiruška, Přemysl, Schöll, E. Chimera States in Brain Networks: Empirical Neural vs. Modular Fractal Connectivity. Chaos. 2018, 28(4), 045112. (link)
  • Kolenic, M., Franke, K., Hlinka, Jaroslav, Matějka, M., Čapková, J., Pausova, Z., Uher, R., Alda, M., Španiel, F., Hájek, T. Obesity, dyslipidemia and brain age in first-episode psychosis. Journal of Psychiatric Research. 2018, 99, 151-158. (link)
  • Fajnerová, I., Greguš, D., Hlinka, Jaroslav, Nekovářová, T., Škoch, A., Zítka, T., Romportl, J., Horáček, J., Žáčková, E. Could Prolonged Usage of GPS Navigation Implemented in Augmented Reality Smart Glasses Affect Hippocampal Functional Connectivity? BioMed Research International. 2018, 2018, 2716134. (link)
  • Mikoláš, P., Hlinka, Jaroslav, Škoch, A., Pitra, Zbyněk, Frodl, T., Španiel, F., Hájek, T. Machine Learning Classification of First-Episode Schizophrenia Spectrum Disorders and Controls Using Whole Brain White Matter Fractional Anisotropy. BMC Psychiatry. 2018, 18, 97. (link)
  • Rosen, B. Q., Krishnan, G. P., Sanda, Pavel, Komarov, M., Sejnowski, T., Rulkov, N., Ulbert, I., Eross, L., Madsen, J., Devinsky, O., Doyle, W., Fabo, D., Cash, S., Bazhenov, M., Halgren, E. Simulating Human Sleep Spindle MEG and EEG from Ion Channel and Circuit Level Dynamics. Journal of Neuroscience Methods. 2019, Online October 2018. (link)