Laboratory of Cell Biology

Contacts
Group head: 
Martin Potocký
Centre: 
Lysolaje
Address: 
Rozvojová 263, 165 02 Praha 6 - Lysolaje, Czech Republic
Email: 
potockyatueb [dot] cas [dot] cz
Phone: 
+420 225 106 457, +420 225 106 458
www: 
Laboratory of Cell Biology
The Laboratory of Cell Biology explores selected molecular regulatory modules of plant cell polarity and morphogenesis operating mostly at the plasma membrane, at the interface of secretory pathway, membrane lipids and cytoskeleton. Plant morphogenesis is based essentially on two processes - oriented cell division and differential cell growth. As model plants we use angiosperm Arabidopsis and tobacco along with moss Physcomitrella patens. We focus on intracellular molecular mechanisms driving cellular morphogenesis such as exocytosis. Proteins participating in these mechanisms are, despite major differences in cell structure and behaviour, often very similar to those found in the fungal and animal kingdoms. The laboratory is centered around the detailed characterization and regulation of the plant vesicle tethering complex exocyst in various cell types across plant species, including plant-pathogen interactions. A significant aspect of the research is understanding of minor membrane lipids in the maintenance and establishment of cell polarity.
The Exocyst Complex in Regulation of Cell Morfogenesis and Pathogen Defence
One of elements regulating exocytosis is the exocyst, an ancient protein complex generally found in eukaryots. The exocyst serves as an effector of RAB and RHO GTPases and is crucial for polarized cell growth. It participates in targeting and tethering of secretory vesicles to secretory domains of the plasma membrane. The exocyst is consists of eight subunits termed SEC3, SEC5, SEC6, SEC8, SEC10, SEC15, EXO70, and EXO84.
We proved that the exocyst is present in plants, where it functions namely in cells characterized by intensive secretion (Hála et al 2008). Mutants of Arabidopsis thaliana in SEC8, EXO70A1, and EXO84b subunits are dwarf sterile plants (Synek et al. 2006, Fendrych et al. 2010, 2013). Other exocyst mutants are defective in seed coat formation or in polar growth of pollen tubes, root hairs and etiolated hypocotyls (Cole et al. 2005, Hála et al. 2008, Kulich et al. 2010). During cell division, the exocyst also plays an important role in establishment and maturation of the new wall separating daughter cells (Fendrych et al. 2010). Currently we also try to determine the interaction partners of the exocyst complex (e.g. RAB GTPases) and elucidate possible role of the exocyst in recycling of plasma membrane proteins.
Interestingly, we demonstrated that some isoforms of the EXO70 subunit are also involved in response to pathogen in Arabidopsis, e.g. an important role in formation of specialized structures and cell wall apposition engaged in the plant defense (Pečenková et al. 2011, 2017, Kulich et al. 2013, 2018).
Recently we employed the moss Physcomitrella patens as another model organism for this study. Using the technique of gene targeting, we are able to generate disruption mutants in exocyst subunits that exhibit significant morphological changes (Rawat et al. 2017, Brej3kov8 et al., submitted).
Small GTPases in Exocytosis
Small GTPases form a family of monomeric proteins that control many polarized processes within the plant cell. We focus on the RAB GTPase subfamily connected with membranes via double geranylgeranyl anchors. The anchors are attached by action of a protein complex called RAB geranylgeranyl transferase (RAB GGT). We study how the geranylation status affects intracellular vesicle transport, hormone signaling, and plant morphogenesis. When RAB GGT activity is decreased we observe small plants with curled leaves, loss of shoot apical dominance, no response to gravity direction changes in shoots, changes in morphogenesis in the dark (Hála et al. 2010).
RAB GTPases are currently extensively studied as important regulators of the intracellular vesicular transport. Using biochemical, molecular biological and genetic approaches, we study RAB GTPases involved in terminal steps of exocytosis – especially those regulating the exocyst complex. We attempt to identify interactors of such RABs as a tool to determine particular role of different RABs in the plant cell.
Furthermore, we study RAB GDP dissociation inhibitors (RAB GDI) that belong to basic regulators of small GTPases with redundant functions and play essential role in the plant cell.

Signaling Lipids in the Regulation of Plant Polarity
Membrane phosphoinositides and phosphatidic acid, along with lipases, kinases and phosphatases, are known controllers of cell polarity and vesicular trafficking in yeast and animal cells. Phospholipids function in eukaryotic cells both as classical "second messengers" and as localization cues, enabling the recruitment of phospholipid-binding proteins to specific membranes or membrane domains. We use a growing pollen tube model to address the relationship of these two aspects of membrane lipid function, especially as related to substrates and products of phospholipase D in plant cell polarization (Potocký et al. 2014). We described the reciprocal character of regulation of phospholipase D activity and actin dynamics restricted to PIP2-dependent PLDβ, and suggest that this PLD–actin interaction is important for general tip growth of plant cells (Pleskot et al. 2010).
We are currently studying the involvement of other PLD isoforms in pollen tube growth and trying to describe the complex dynamics of various signaling lipids during the establishment and maintenance of polar cell expansion (Platre et al. 2018).
        
Multiscale analysis of membrane-protein interfaces
To describe the role of protein–lipid interplay in cell polarity, it is important to understand the mechanistic details of lipid-lipid-protein, and protein–protein interactions. Molecular dynamics (MD) simulations have been shown to play an invaluable role in the description of dynamic interaction of membrane proteins with phospholipids, which could be hardly obtained by experimental approaches. In the past 5 years we have made significant contribution in establishing MD-based research in plant science community, focusing mostly on the interaction of exocyst and cytoskeleton-regulating proteins with membranes (Pleskot et al. 2012, 2015).

Workers: 

head of the laboratory
senior scientist

senior scientist

scientist

scientific assistant

postdoc

postgraduate student

technician

Research projects: 
Number of grants/projects: 14
Publications: 
Number of publications: 118

2022

2021

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