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Core Facilities

Core Facilities

Metabolomics

Microscopic Core Facility

Proteomics service laboratory


 

For equipment booking use our on-line reservation system (requires registration).
 
 

Microscopy facility

  Equipment Year Dept Location Use for Manager/ Operator

FemtoJet® 4i (programmable microinjector) + InjectMan® 4 (micromanipulator) 2023 80 DA1 001 microinjection of adherent cells Markéta Hlaváčková
Bruker Ultima IntraVital 2018 60 DAI upright multiphoton microscope for in vivo and in vitro imaging

Daniel Hadraba / 

David Vondrášek

Leica SP8 AOBS WLL MP confocal 2015 60 DAI 10 Inverted laser scanning and multiphoton microscope

Daniel Hadraba/ 

David Vondrášek

Leica SPE confocal 2007 60 DAI 9 Upright laser scanning and fluorescence microscope

Daniel Hadraba/

 David Vondrášek

Optical projection tomography 2011 60 DAI 2 3D imaging of transparent samples Radochová Barbora
CellVizio Optic fibre confocal microscopy 2015 33 D 050 Optic fibre confocal microscope capable of fluorescence imaging from surface to deep tissues in whole animal. See more. Jakub Otáhal  / David Kala
  Neuroimage - stereology microscope 2010 33 D 048 Neuroimage (MBF Bioscience Hana Kubová 
  Leica LMD 6000 Laser capture microdissector 2008 21 D 239 Allows to identify and dissect microareas from tissue or cell smear. Martin Vodička 
Carv II system 2013 32 D 048 Spinning disc confocal microscope

Daniel Hadraba /

David Vondrášek

Metabolomic facility

Equipment Year Dept Location Use for Manager/Operator
Qtrap 5500 mass spectrometer 2012 17 E 218 metabolomics, lipidomics

Ondřej Kuda/

Ivana Brabcová

Whole body phenotyping

  Equipment Year Dept Location Use for Manager
 

Behavioral analysis

         
  PhenoWorld - automatic modular system 2015 32 G Modular system for complex behavioral analyses Petr Ergang 
  Multi conditioning system 2011 32 D 037 System accommodating nine standard conditioning paradigms for the evaluation of learning, memory, emotion and stress-related behaviors in mice and rats. Štěpán Kubík
  Phenotyper - system for behavioral analysis 2013 33 D 011 PhenoTyper (Noldus) for 8 rats. System is designed for automatated behavioral analysis in instrumented observation cage.   Hana Kubová 
  Hematology Analyzer scil Vet abc Plus+ 2016 41 E 017 Analytical Instrument to determine haematological parameters from whole blood Světlana. Žufanová
             
 

CT/PET

         
microCT/PET Albira 2013 96 E 013 In vivo imaging of small laboratory animals Roman Liška
               
 

Echocardiography

         
  GE-VIVID 7 2010 80 D 325 Echocardiographic assessment of rat heart geometry and function František Papoušek
  VisualSonics Vevo 3100  2022 80 D 302b Echocardiographic assessment of mouse heart geometry and function František Papoušek
 

Blood pressure

         
  Telemetric monitoring of blood pressure 2013 25 D Long term telemetric monitoring of blood pressure and sympathetic activity Ivana Vaněčková 
               
 

Metabolism

         
  Indirect calorimetry INCA Somedic 2012 17 G 008 Indirect calorimetry for mice and rats Kristína Bardová 

Mitochondrial energetics

Equipment Year Dept Location Use for Manager
Oroboros Oxygraph 2k 2013 13+17 DAII 108 Three setups for measurement of cellular/mitochondrial respiration. One with fluorescent attachment for ROS/ATP monitoring Petr Pecina
Seahorse Xfe-24 alanyzer 2014 13 DAII 228 Plate based system for measurement of respiration and glycolytic activity of cells Tomáš Mráček

Cell and molecular biology facility

Equipment Year Dept Location Use for Manager

Xvivo System X3 - hypoxia cell culture system

2017 80 D3 335 incubation and handling of cells under hypoxic conditions Markéta Hlaváčková
Nanodrop spectrophotometer 2007 17 D 224 Measurement of nucleic acid concentration and purity and fluorescent dye labeled proteins. Karla Vágnerová
Light Cycler 480 real-time PCR 2009 17 D 224 Real-time PCR system Veronika Kleinová
ViiA 7 real-time PCR 2012 17 D 224 Real-time PCR system with HRM possibility Karla Vágnerová
Labchip GX Touch    17 D 237

Nucleic Acid Analyzer- automated capillary electrophoresis

Karla Vágnerová
Nanodrop One c    17 D 237 Measurement of nuclei acids and proteins concentration Karla Vágnerová
Chemidoc   17 D 237 Imaging system for the fluorescence and chemiluminescence detection Karla Vágnerová
  QX200 Droplet Digital PCR System 2020 33 D 237/238 System provides absolute quantification of target DNA or RNA molecules for EvaGreen or probe-based digital PCR applications Šárka Růžičková
Osmometer OSMOMAT 3000 Basic 2020 24 D 215 osmolarity measurement (buffers, media) Martin Sládek

Orbital Shaker/Incubator 1997 24 D 2xx (corridor) bacteria growth (up to 3L flasks) Martin Sládek

Plate-readers

Equipment

Year

Dept

Location

Use for

Manager

Microbeta counter 2019 14 D 121 scintillation counting in a plate format Jan Jakubík
Reader Tecan infinity M200 2007 13 DAII 112 Luminescence, Fluorescence (top reading), UV-absorbance (UV-VIS) plate-reader with injectors  Tomáš Mráček
Reader Victor X4 2011 14 D 121 Luminescence, Fluorescence Intensity (both top and bottom reading), UV-absorbance (UV-VIS) and Time-Resolved Fluorescence technologies Jan Jakubík
Reader Synergy HT 2008 75 G C.1.09 single-channel absorbance, fluorescence (400/30, 460/40, 485/20, 508/20, 516/20, 528/20, 560/15, 590/20) and luminiscence microplate reader.

JanTauber

Photometers and Fluorometers

Equipment Year Dept Location Use for Manager
                                   

ISS PC1 spectrofluorimeter

2006 13 D 125 photon counting steady-state fluorescence  Marek Vrbacký
 

Ultracentrifuges and rotors

Equipment  

Year

Dept. Location Use for

Manager

Beckman Optima XL-100K 2001 33 D 024 floor model, max speed 100,000 rpm, rotors: 35 (retired), 45 Ti, 50.3 Ti, 70 Ti, 70.1 Ti, 90 Ti, NVT 90, SW 28, SW 41 Ti Lenka Roubalová
Beckman Optima L-90 1996 13 DaII 114 floor model, max speed 90,000 rpm, rotors: same as for Optima XL-100K Marek Vrbacký
Beckman Optima MAX 130K 2007 33 D 224 benchtop model, max speed 130,000 rpm (1,019,000g with MLA-130 rotor), rotors: MLA-80, MLA-130, TLA-100, TLA-110, MLN-80 Lenka Roubalová
Further info on Ultracentrifuges, Rotors, and Tubes            
Biomaterials            
  Watson Marlow 530U IP31 drive     DAII ground floor peristaltic pump  Elena Fillová
Radiometry            
Shimadzu UV-1700 2004 96 E 008 spectrophotometer Karla Bohuhová
Sample preparation            
  Trans-Blot Turbo Transfer System 2024 25 D 248    
Imaging systems            
Odyssey Classic IR scanner 2004 13 DaII 112 Quantification of the signal of near-infrared fluorophores - Infrared Western blot, In-gel Western analysis, Coomassie-stained gels, SYTO 60, In-Cell Western analysis, in-vivo imaging Kateřina Tauchmannová
Odyssey CLx IR scanner 2018 13 DaII 131b Quantification of the signal of near-infrared fluorophores - Infrared Western blot, In-gel Western analysis, Coomassie-stained gels, SYTO 60, In-Cell Western analysis, On-Cell Western analysis, Protein array, ELISA, small animals imaging, tissue imaging Kateřina Tauchmannová
Bio-Rad Molecular Imager Pharos FX scanner 2009 22 D 237 imaging complex fluorescence applications Adam Eckhardt
ELx808 plate reader (Biotek)  2015 16 D 324 measurements of absorbance (filters) in 96-well plates, shaking, regulation of temperature Olga Zimmermannová
EL808 plate reader (Biotek) 2003 16 D 324 measurements of absorbance (filters) in 96-well plates, shaking, regulation of temperature Olga Zimmermannová
Plate reader (Biotek) 2003 16 D 324 measurements of absorbance (filters) in 96-well plates, shaking, regulation of temperature Olga Zimmermannová
Eppendorf Mastercycler Nexus 2024 16 D 324 PCR cycler, 0.2ml and 0.5 ml PCR tubes Olga Zimmermannová
Eppendorf Mastercycler Pro 2016 16 D 324 PCR cycler, 0.2ml PCR tubes Olga Zimmermannová
Eppendorf Mastercycler Nexus Gradient 2020 16 D 324 PCR cycler, 0.2ml or 0.5ml PCR tubes, temperature gradient Olga Zimmermannová
Reader Cytation 3 (Biotek) 2016 16 D 324 measurements of absorbance, fluorescence (filters, monochromator), luminescence, dual reagent injectors, imaging – objectives 4x and 20x, BF, DAPI, GFP, RFP, laser autofocus; adaptors – slides, Petri dish, gas controler  Olga Zimmermannová
Reader Synergy H1M (Biotek) 2024 16 D 324 measurements of absorbance, fluorescence, luminescence (monochromator) Olga Zimmermannová