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Laboratoř genové exprese
Biotechnologický ústav AV ČR
Vídeňská 1083
142 20 Prague 4
Czech Republic
Tel.:+420 241 063 623
Fax: +420 241 063 610
DIČ: CZ86652036
IČ: 86652036
VAT No.: CZ86652036
Publications
144. Bibova I, Linhartova I, Stanek O, Rusnakova V, Kubista M, Suchanek M, Vasakova M, Sebo P.
Detection of immune cell response to M. tuberculosis–specific antigens by quantitative polymerase chain reaction
Diagn Microbiol Infect Dis. 2011 Nov 14. [Epub ahead of print]
Publications
143. Brevik A, Rusnakova V, Duale N, Slagsvold HH, Olsen AK, Storeng R, Kubista M, Brunborg G, Lindeman B.
Preconceptional paternal glycidamide exposure affects embryonic gene expression: Single embryo gene expression study following in vitro fertilization.
Reprod Toxicol. 2011 Sep 29. [Epub ahead of print].
142. Tzachi Bar, Mikael Kubista and Ales Tichopad.
SURVEY AND SUMMARY. Validation of kinetics similarity in qPCR
Nucleic Acids Research, 1–12 (2011).
141. Mikael Kubista and Anders Stahlberg.
DNA diagnostics get digitased.
Drug Discovery World (2011).
140. Anders Stahlberg,Mikael Kubista and Pierre Aman.
Single-cell gene-expression profiling and its potential diagnostic applications.
Expert Rev. Mol. Diagn. 11(7), 735–740 (2011).
139. Mikael Kubista and Ales Tichopad.
qPCR Round Table.
International Drug Discovery Aug/Sept (2011).
138. Helga Gruber, Vijay Paul, Patrick Guertler, Hubert Spiekers, Ales Tichopad, Heinrich H D Meyer, Martin Muller.
Fate of Cry1Ab Protein inAgricultural Systems under Slurry Management of Cows Fed Genetically Modified Maize (Zea mays L.) MON810: A QuantitativeAssessment.
J Agric Food Chem Jun 2011.
137. Mikael Kubista, Linda Strombom, David Svec, Vendula Rusnakova, Anders Stahlberg.
High throughput single cell expression profiling: Taking a closer look on biological response.
European Pharmaceutical Review. 2011 16(2):20-24.
136. Stephen A. Bustin, Vladimir Benes, Jeremy A. Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W. Pfaffl, Gregory L. Shipley, Jo Vandesompele, and Carl T. Wittwer.
Primer Sequence Disclosure: A Clarification of the MIQE Guidelines.
Clin. Chem., 201116295 March 18, 2011.
135. Bohuslavová R, Kolár F, Kuthanová L, Neckár J, Tichopád A, Pavlinkova G.
Gene expression profiling of sex differences in HIF1-dependent adaptive cardiac responses to chronic hypoxia.
J Appl Physiol. 2010 Oct;109(4):1195-202.
134. Zanvit P, Tichopád A, Havlícková M, Novotná O, Jirkovská M, Kolostová K,
Cechová D, Julák J, Sterzl I, Prokesová L.
Adjuvant effect of Bacillus firmus on the expression of cytokines and
toll-like receptors in mouse nasopharynx-associated lymphoid tissue (NALT)
after intranasal immunization with inactivated influenza virus type A.
Immunol Lett. 2010 Nov 30;134(1):26-34.
133. Veiga MI, Ferreira PE, Schmidt BA, Ribacke U, Björkman A, Tichopad A, Gil JP.
Antimalarial exposure delays Plasmodium falciparum intra-erythrocytic cycle and drives drug transporter genes expression.
PLoS One. Aug 25;5(8):e12408.(2010).
132. Anders Stahlberg, Daniel Andersson, Johan Aurelius, Maryam Faiz, Marcela Pekna, Mikael Kubista, Milos Pekny.
Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations.
Nucleic Acids Research, 2010, 1–12.
131. Kolostova K, Pinterova D, Tesarova P, Bobek V, Mikulova V, Kubecova M, Brychta M, Rusnakova V, Kasimir-Bauer S, Kubista M.
Gene expression profiling in circulation cells(CTCS)of breast carcinoma patients.
Annals of Oncology 21:49-50 Suppl. 4,99P MAY(2010).
13O. Stofkova A, Zelezna B, Romzova M, Ulicna O, Kiss A, Skurlova M, Jurcovicova J.
Effect of feeding status on adjuvant arthritis severity, cachexia, and insulin sensitivity in male Lewis rats.
Mediators Inflamm. (2010) Epub 2010 Sep 30.
129. Kozubenko N, Turnovcova K, Kapcalova M, Butenko O, Anderova M, Rusnakova V, Kubista M, Hampl A, Jendelova P, Sykova E.
Analysis of in vitro and in vivo characteristics of human embryonic stem cell-derived neural precursors.
Cell Transplant 19(4):471-86 (2010).
128. Anna Coll, Anna Nadal, Rosa Collado, Gemma Capellades, Mikael Kubista, Joaquima Messeguer, Maria Pla.
Natural variation explains most transcriptomic changes among maize plants of MON810 and comparable non-GM varieties subjected to two N-fertilization farming practices
Plant Mol Biol 73:349–362 (2010).
127. Mikael Kubista.
REAL-TIME PCR: where we are and where are we heading.
Drug Discovery World Spring (2010).
126. Ctrnacta V, Fritzler JM, Surinova M, Hrdý I, Zhu G, Stejskal F.
Efficacy of S-adenosylhomocysteine hydrolase inhibitors, D-eritadenine and (S)-DHPA, against the growth of Cryptosporidium parvum in vitro.
Exp Parasitol. Oct;126(2):113-116(2010).
125. Radek Sindelka, Monika Sidova, David Svec, Mikael Kubista.
Spatial expression profiles in the Xenopus laevis oocytes measured
with qPCR tomography.
Methods 51:87-91(2010).
124. Ales Tichopad, Tzachi Bar, Ladislav Pecen, Robert R Kitchen, Mikael Kubista, Michael W. Pfaffl.
Quality control for quantitative PCR based on amplification compatibility test.
Methods 50:308–312(2010).
123. Robert R. Kitchen, Mikael Kubista, Ales Tichopad.
Statistical aspects of quantitative real-time PCR experiment design.
Methods 50:231–236 (2010).
122. Anders Bergkvist, Vendula Rusnakova, Radek Sindelka, Jose Manuel Andrade Garda, Björn Sjögreen,
Daniel Lindh, Amin Forootan, Mikael Kubista.
Gene expression profiling – Clusters of possibilities.
Methods 50:323–335(2010).
121. Tichopad A, Kitchen R, Riedmaier I, Becker C, Stahlberg A, Kubista M.
Design and Optimization of Reverse-Transcription
Quantitative PCR Experiments.
Clinical Chemistry 55:101816–1823 (2009).
120. Mášová A, Šindelka R, Kubista M, Kindl J, Jiráček J.
Gene expression responses in larvae of the fleshfly Sarcophaga bullata after immune stimulation.
Folia Biol (Praha). 2009;55(3):98-106.
119. Mikael Kubista.
Intracellular Gene Expression Profiles Revealed with Real-time PCR Tomography.
Research Spotlight: Gene Expression (2009).
118. Stephen A. Bustin, Vladimir Benes, Jeremy A. Garson, Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W. Pfaffl, Gregory L. Shipley, Jo Vandesompele,5 and Carl T. Wittwer.
The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments.
Clinical Chemistry 55,4 (2009).
117. Kubista M.
What future holds for real-time PCR.
European Pharmaceutical Reviews Industry Focus (2009)
116. Ferjentsik Z, Sindelka R, Jonak J.
Expression patterns of Src-family tyrosine kinases during Xenopus laevis development.
The International Journal of Developmental Biology. 2009;53(1):163-8.
115. Niazi A,Yazdanipour A, Ghasemi J, Amini A, Bozorgzad S, Kubista M.
Spectrophotometric Investigation of the Acidity Constants of Fluorescein in Various Water-Organic
Solvent Media.
Chemical Engineering Communications. 2008; 195:1257–1268.
114. M. W. Pfaffl, J. Vandesompele and M. Kubista.
Data Analysis Software: Chapter 5 in Real-Time PCR: Current Technology and Applications.
Publisher: Caister Academic Press. Editor: Julie Logan, Kirstin Edwards and Nick Saunders ISBN: 978-1-904455-39-4, 2009.
113. Kubista M, Eliasson J, Lennerĺs M, Andersson S and Sjöback R.
What is needed to measure a difference with real-time PCR?
Eppendorf BioNews Application Notes 2008.
112. Kubista M.
Emerging real-time PCR applications.
Drug Discovery World Summer 2008.
111. Pinzani P, Lind K, Malentacchi F, Nesi G, Salvianti F, Villari D, Kubista M, Pazzagli M, Orlando C.
Prostate-specific antigen mRNA and protein levels in laser microdissected cells of human prostate measured by real-time reverse transcriptase-quantitative polymerase chain reaction and immuno-quantitative polymerase chain reaction.
Hum Pathol. 2008 Jul 10. [Epub ahead of print]
110. Bergkvist A, Forootan A, Zoric N, Strombom L, Sjoback R, Kubista M.
Choosing a normalization strategy for RT-PCR.
Genetic Engineering & Biotechnology News. 2008 Jul; 28 (13):26
109. Li LZ, Lundkvist A, Andersson D, Wilhelmsson U, Nagai N, Pardo AC, Nodin C, Stahlberg A, Aprico K, Larsson K, Yabe T, Moons L, Fotheringham A, Davies I, Carmeliet P, Schwartz JP, Pekna M, Kubista M, Blomstrand, Maragakis N, Nilsson M, Pekny M.
Protective role of reactive astrocytes in brain ischemia.
Journal of Cerebral Blood Flow and Metabolism. 2008 Mar; 28(3):468-481.
108. Ståhlberg A, Elbing K, Andrade-Garda JM, Sjögreen B, Forootan A, Kubista M.
Multiway real-time PCR gene expression profiling in yeast Saccharomyces cerevisiae reveals altered transcriptional response of ADH-genes to glucose stimuli.
BMC Genomics. 2008 Apr 16;9:17
107. Sindelka R, Jonák J, Hands R, Bustin SA, Kubista M.
Intracellular expression profiles measured by real-time PCR tomography in the Xenopus laevis oocyte.
Nucleic Acids Res. 2008 Feb;36(2):387-92
106. Ciencialová A, Neubauerová T, Sanda M, Sindelka R, Cvačka J, Voburka Z, Buděšínský M, Kašička V, Sázelová P, Solínová V, Macková M, Koutek B, Jiráček J.
Mapping the peptide and protein immune response in the larvae of the fleshfly Sarcophaga bullata.
J Pept Sci. (2007)
105. I. M. Mackay, S. A. Bustin, J. M. Andrade, M. Kubista and T. P Sloots.
Quantification of Micro-Organisms: Not Human, Not Simple, Not Quick. Chapter 5 in Real-Time PCR in Microbiology: From Diagnosis to Characterization.
Publisher: Caister Academic Press. Editor: Ian M. Mackay Sir Albert Sakzewski Virus Research Centre, Queensland, Australia. ISBN: 978-1-904455-18-9 (2007).
104. M.G.H.M. Beld, C. Birch, P.A. Cane, W. Carman, E.C.J. Claas, J.P. Clewley, E. Domingo, J. Druce, C. Escarmis, R.A.M. Fouchier, V. Foulongne, M.G. Ison, L.C. Jennings, B. Kaltenboeck, I.D. Kay, M. Kubista, O. Landt, I.M. Mackay, J. Mackay, H.G.M. Niesters, M.D. Nissen, S. Palladino, N.G. Papadopoulos, A. Petrich, M,W. Pfaffl, W. Rawlinson, U. Reischl, N.A. Saunders, C. Savolainen-Kopra, O. Schildgen, G.M. Scott, M. Segondy, R. Seibl, T.P. Sloots, Y-W. Tang, R. Tellier and P.C.Y. Woo. Experts Roundtable: Real-Time PCR and Microbiology.
Chapter 10 in Real-Time PCR in Microbiology: From Diagnosis to Characterization. Publisher: Caister Academic Press. Editor: Ian M. Mackay Sir Albert Sakzewski Virus Research Centre, Queensland, Australia.
ISBN: 978-1-904455-18-9 (2007).
103. Andrade JM, Kubista M, Carlosena A, Prada D.
3-Way characterization of soils by Procrustes rotation, matrix-augmented principal components analysis and parallel factor analysis.
Anal Chim Acta. (2007), 603(1): 20-9.
102. M. Kubista, R. Sindelka, A. Tichopad, A. Bergkvist, D. Lindh, A. Forootan.
The Prime Technique. Real-time PCR data analysis.
G.I.T. Laboratory Journal (2007), 9-10, 33-35
101. L. Li, A. Lundkvist, D. Andersson, U. Wilhelmsson, N. Nagai, A. C. Pardo, C. Nodin, A. Sta°hlberg, K. Aprico, K. Larsson, T. Yabe, L. Moons, A. Fotheringham, I. Davies, P. Carmeliet, J. P. Schwartz, M. Pekna, M. Kubista, F. Blomstrand, N. Maragakis, M. Nilsson and M.Pekny.
Protective role of reactive astrocytes in brain ischemia.
Journal of Cerebral Blood Flow & Metabolism (2007), 1–14
99. AAA Real-Time PCR Tech Guide - Volume 3
98. AAA Real-Time PCR Tech Guide - Volume 2
97. AAA Real-Time PCR Tech Guide - Volume 1
96. M. Kubista, B. Sjogreen, A. Forootan, R. Sindelka, J. Jonak, JM. Andrade.
Real-time PCR gene expression profiling.
European Pharmaceutical Reviews (2007), Vol. 1.
95. K. Lind, A.Ståhlberg, N. Zoric, and M. Kubista.
Combining sequence-specific probes and DNA binding dyes in real-time PCR for specific nucleic acid quantification and melting curve analysis.
Biotechniques 40, 315-18 (2006).
See also: Thinking outside the BOXTO, BioSpotlight, Biotechniques (2006), Vol. 3, 40, 251
94. Sindelka R, Ferjentsik Z, Jonak J.
Developmental expression profiles of Xenopus laevis reference genes.
Dev Dyn. 2006; 235(3):754-8.
93. M. Kubista, J. M. Andrade, M. Bengtsson, A. Forootan, J. Jonák, K. Lind, R. Sindelka, R. Sjöback, B. Sjögreen, L. Strömbom, A.Ståhlberg & N. Zoric.
The Real-time Polymerase Chain Reaction.
Molecular Aspects of Medicine 27, 95-125 (2006).
92. M. Leijon, M. Mousavi-Jasi, & M. Kubista.
LightUp Probes in Clinical Diagnostics.
Molecular Aspects of Medicine (2006).
91. A. Niazi,, A. Yazdanipour, J. Ghasemi and M. Kubista.
Spectrophotometric and thermodynamic study on the dimerization
equilibrium of ionic dyes in water by chemometrics method.
Spectrochimica Acta Part A 65: 73–78 (2006).
90. K. Noaksson, N. Zoric, X. Zeng, M. S. Rao, J. Hyllner, H. Semb, M. Kubista, P. Sartipy.
Monitoring Differentiation of Human Embryonic Stem Cells Using Real-Time PCR.
Stem Cells 23, 1460-1467 (2005).
89.M. Bengtsson, A. St?hlberg, P. Rorsman, and M. Kubista
Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels.
Genome Research 15, 1388-1392 (2005).
See also: Research Highlights in Nature Review Genetics 6, 1758 (2005).
88. K. Lind and M. Kubista
Development and evaluation of three real-time immuno-PCR assemblages for quantification of PSA.
J.Immunological Methods 304, 107-116 (2005).
87. M. Kubista, J. Ghasemi, B. Sjögreen & A. Forootan
Trilinear Fluorescence Spectroscopy.
Spectroscopy Asia 1, 22-27 (2005)
86. J. H?kansson, X. Xian, L. He, A. St?hlberg, S. Nelander, T. Samuelsson, M. Kubista, H. Semb.
Neural Cell Adhesion Molecule-Deficient ß-Cell Tumorigenesis Results in Diminished Extracellular Matrix Molecule Expression and Tumour Cell-Matrix Adhesion.
Tumor Biology 26, 103-112 (2005).
85. A. Ståhlberg, N. Zoric, P. Åman & M. Kubista.
Quantitative real-time PCR for cancer detection: the lymphoma case.
Expert Reviews in Molecular Diagnostics 5, 221-230 (2005)
84. M. Kubista, J. Karlsson, M. Bengtsson, N. Zoric & G. Westman.
DNA-binding fluorophores.
Encyclopedia of Medical Genomics and Proteomics (2004)
83. M. Kubista & N. Zoric.
PCR platforms.
Encyclopedia of Medical Genomics and Proteomics (2004)
82.M. Kubista, J. Ghasemi, B. Sjögreen & A. Forootan
Trilinear Fluorescence Spectroscopy.
Spectroscopy Europe 16, 8 (2004)
81. M. Kubista.
Nucleic acid-based technologies: application amplified.
Pharmacogenomics 5(7), 767-773 (2004)
80. A. St?hlberg M. Kubista & M. Pfaffl
Comparison of Reverse Transcriptases in Gene Expression Analysis.
Clin. Chem. 50, 1679 (2004)
79. J.
M. Andrade, M, P. Gómez-Carracedo, W. Krzanowski & M. Kubista.
Procrustes rotation in analytical chemistry, a tutorial.
Chemometrics and Intelligent Laboratory Systems 72 123 (2004).
78. M.
Kubista, I. H. Ismail, A. Forootan, & B., Sjögreen.
Determination of Protolytic Constants by Trilinear Fluorescence Spectroscopy.
J. Fluorescence 14, 139 (2004) .
77. A. St?hlberg, J. H?kansson, X. Xian, H. Semb, and M. Kubista.
Properties of the Reverse Transcription Reaction in mRNA Quantification.
Clin. Chem. 50, 509 (2004).
76. J. Ghasemi, A. Niazi, G. Westman, &, M. Kubista
Thermodynamic characterization of the dimerization equilibrium of an asymmetric dye by spectral titration and chemometric analysis.
Talanta 62, 835 (2004).
75. J. Ghasemi, S. Ahmadi, M. Kubista, and A. Forootan.
Determination of Acidity .
74. J. M. Andrade, M. P. Gómez-Carracedo, E. Fernández, A. Elbergali, M. Kubista and D. Prada.
Classification of commercial apple beverages using a minimum set of mid-IR wavenumbers selected by Procrustes rotation.
Analyst, 128, 1193?1199 (2003).
73. T. Bar, A. Ståhlberg, A. Muszta and M. Kubista.
Kinetic Outlier Detection (KOD) in real-time PCR Nucl.
Acids Res. 31, e105 (2003).
72. M. Bengtsson, J. Karlsson, G. Westman and M. Kubista.
A new minor groove binding asymmetric cyanine reporter dye for real-time PCR.
Nucl. Acids Res. 31, e45 (2003).
71. T. Bar, M. Bengtsson, J. Karlsson, K. Lind, A. Stålberg, G. Westman, N. Zoric & M. Kubista.
The TATAA Biocenter, Sweden.
InFocus 4, 6-7 .
70. A. Ståhlberg, P. Åman, B. Ridell,
P. Mostad & M. Kubista.
Quantitative Real-Time PCR Method for Detection of B-Lymphocyte Monoclonality by Comparison of k and l Immunoglobulin Light Chain Expression.
Clin. Chem. 49, 51-59 (2003).
69. K. Lind & M. Kubista.
Real-Time Immuno-PCR on the iCycler iQ System.
Bioradiations 109, 32-33 (2002).
68. J. Ghasemi, A. Niazi, M. Kubista & A. Elbergali.
Spectrophotometric determination of acidity constants of 4-(2-pyridylazo)resorcinol in binary methanol-water mixtures.
Anal. Chimica Acta, 455, 335-342 (2002).
67. M. Kubista, A. St?hlberg & T. Bar.
Light-up probe based real-time Q-PCR. In Genomics and Proteomics Technologies (Eds. R. Raghavachari & W. Tan).
Proceedings of SPIE, 4264, 53-58 (2001).
66. N. Svanvik, J. Nygren, G. Westman & M. Kubista.
Free-probe Fluorescence of Light-up probes.
J. Amer. Chem. Soc., 123, 803-809 (2001).
65.N.Svanvik, A. St?lberg, U. Sehlstedt, R. Sjöback & M. Kubista.
Detection of PCR Products in Real-time Using Light-up Probes.
Anal. Biochem. 287, 179-182 (2000).
64.J. Isacsson, H. Cao, L. Ohlsson,
S. Nordgren, N. Svanvik, G. Westman, M. Kubista, R. Sjöback, & U. Sehlstedt.
Rapid and specific detection of PCR products using light-up probes.
Molecular and Cellular Probes, 14, 321-328 (2000).
63. N. Svanvik, G. Westman, W. Dongyuan & M. Kubista.
Light-up Probes Thiazole Orange Conjugated PNA for Detection of Nucleic Acid in Homogeneous Solution.
Anal. Biochem. 281, 26-35 (2000).
62. C. M. Gustafsson, H. Sp?hr, J. Beve & M. Kubista.
Temporal Regulation of RNA Polymerase II by Srb10 and Kin28 Cyclindependent Kinases.
ChemTracts, 12, 933-937 (1999).
61. H. R. Widlund, P. N. Kuduvalli, M. Bengtsson,
H. Cao, T. D. Tullius & M. Kubista.
Nucleosome structural features and intrinsic properties of the (TATAAACGCC)-repeat sequence.
J. Biol. Chem. 274, 31847-31852 (1999).
60.A.-C. Th?ström, P. Lowary,
H. Widlund, M. Kubista & J. Widom.
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences.
J. Mol. Biol. 288, 213-229 (1999).
59.L. Antonov, G. Gergov, V. Petrov & M. Kubista.
UV-Vis spectroscopic and chemometric study on the aggregation of ionic dyes in water.
Talanta 49, 99-106 (1999).
58. M. Kubista, J. Nygren, A. Elbergali & R. Sjöback.
Eliminating the need for reference samples.
Critical Reviews in Analytical Chemistry 29, 1-28 (1999).
57. T. Simonsson, H. Widlund & M. Kubista.
Structure-Function Correlations of the Insulin-linked Polymorphic Region.
Chemtract 12, 210-217 (1999).
56. A. Elbergali, J. Nygren & M. Kubista.
An automated procedure to predict the number of components in spectroscopic data.
Anal. Chim. Acta 379, 143-158 (1999).
55. R. Sjöback, J. Nygren & M. Kubista.
Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential.
Biopolymers 46, 445-453 (1998).
54. H. Cao, H. Widlund, T. Simonson & M. Kubista.
TGGA-repeats impair nucleosome formation.
J. Mol. Biol. 281, 253-260 (1998).
53. J. Nygren, A. Elbergali & M. Kubista.
Unambiguous Characterization of a Single Test Sample by Fluorescence Spectroscopy and Solvent Extraction without Use of Standards.
Analytical Chemistry 70, 4841-4846 (1998).
52. J. Nygren, N. Svanvik & M. Kubista.
The interaction between the fluorescent dye thiazole orange and DNA.
Biopolymers 46, 39-51 (1998).
51.T. Simonson, P. Pecinka & M. Kubista.
DNA tetraplex formation in the control region of c-myc
Nucl. Acids Res., 26, 1167-1172 (1998).
50.R. Sjöback, C. M. Gustafsson & M. Kubista.
Determination of DNA protein affinity constants using chemometric analysis of tryptophan fluorescence quenching data.
J. Luminescence, 72-74, 610-611 (1997).
49.H. Widlund, H. Cao, S. Simonson, E. Magnusson, T. Simonson, J. D. Kahn, D. M. Crothers, P. E. Nielsen, M. Kubista.
Identification and Characterization of genomic nucleosome positioning sequences.
J. Mol. Biol., 267, 807-817 (1997).
48. J. Nygren, J. M. Andrade, & M. Kubista.
Characterization of a single sample by Combining thermodynamic and Spectroscopic Information in Spectral Analysis.
Anal. Chem. 68, 1706-1710 (1996).
47.M. Kubista, T. Simonson, R. Sjöback, H. Widlund, & A. Johansson.
Towards an Understanding of the Mechanism of DNA Strand Exchange Promoted by RecA Protein. in ‘Biological Structure and Dynamics’
Eds. Ramaswamy H. Sarma and Mukti H. Sarma, pp. 49-60, Adenine press (1996).
46. A. Carlosena, J. M. Andrade, M. Kubista, D. Prada.
Procrustes Rotation as a way to Compare Different Sampling Seasons in Soils.
Anal. Chem. 67, 2373-2378 (1995).
45. R. Sjöback, J. Nygren & M. Kubista.
Absorption and Fluorescence properties of Fluorescein.
Spetrochimica Acta Part A 51, L7-L21 (1995).
44. M. Kubista, R. Sjöback & J. Nygren.
Quantitative Spectral Analysis of Multicomponent Equilibria.
Analytica Chimica Acta 302, 121-125 (1995).
43. P. Wittung, J. Kajanus, M. Kubista, & B. Malmström.
Absorption flattening in the optical spectra of liposome-entrapped substances.
Febs Lett. , 352, 37-40 (1994).
42. P. Samuelsson, K. Jansen & M. Kubista.
Long-range Interactions between DNA-bound Ligands.
J. Mol. Recogn. 7, 233-241 (1994).
41. T. Simonson, M. Kubista, R. Sjöback, H. Ryberg & M. Takahashi.
Properties of RecA-oligonucleotide Complexes.
J. Mol. Recogn. 7, 199-206 (1994).
40. M. Kubista, B. Nordén & M. Takahashi.
Properties of RecA Complexes with Homopolymeric DNA strands depend on Sequence Complementarity. Implications for the Mechanism of Strand Exchange.
Nucleosides & Nucleotides 13(1-3), 753-772 (1994).
39. M. Kubista, R: Sjöback, S. Eriksson & B. Albinsson.
Experimental Correction for the Inner-filter Effect in Fluorescence Spectra.
Analyst 119, 417-419 (1994).
38.K. Jansen, B. Nordén& M. Kubista.
Sequence Dependence of 4’,6-Diamidino-2-phenylindole (DAPI)-DNA Interactions.
J. Amer. Chem.Soc. 115, 10527-10530 (1993).
37. M. Kubista, R. Sjöback & B. Albinsson.
Determination of Equilibrium Constants by Chemometric Analysis of Spectroscopic Data.
Anal. Chem. 65, 994-998 (1993).
36. T. Simonson & M. Kubista.
DNA Orientation in Shear Flow.
Biopol. 33, 1225-1235 (1993).
35. I. Scarminio & M. Kubista.
Analysis of Correlated Spectral Data.
Anal. Chem. 65, 409-418 (1993).
34. S. Kim, S. Eriksson, M. Kubista, & B. Nordén.
Interaction of 4’,6-Diamidino-2-phenylindole (DAPI) with Poly[d(G-C)2] and Poly[d(G-m5C)2]: Evidence for Major Groove Binding of a DNA Probe.
J. Amer. Chem. Soc. 115, 3441-3447 (1993).
33. S. Eriksson, S. Kim, M. Kubista, & B. Nordén.
Binding of 4’,6-Diamidino-2-phenylindole (DAPI) to AT Regions of DNA: Evidence for an Allosteric Conformational Change.
Biochem. 32, 2987-2998 (1993).
32. M. Kubista, S. Eriksson & B. Albinsson.
Quantitative Spectral Analysis Without Reference Samples.
Spectrosc.Europe 4, 28-29 (1992).
31. B. Nordén, C. Elvingson, M. Kubista, B. Sjöberg, H. Ryberg, M. Ryberg, K. Mortensen, & M. Takahashi.
Structure of a RecA-DNA Complexes Studied by Combination of Linear Dichroism and Small-angle Neutron-scattering Measurements on Flow-oriented Samples.
J. Mol. Biol. 226, 1175-1191 (1992).
30. B. Nordén, M. Kubista, & T. Kurucsev.
Linear Dichroism of Nucleic Acids.
Quart. Rev. Biophys. 25, 51-170 (1992).
29. B. Nordén, C. Elvingson, P. Hagmar, M. Kubista, D. Baty, K. Mortensen, & M. Takahashi.
RecA-protein-DNA Complexes Studied by Flow Linear Dichroism, Fluorescence and Small Angle Neutron Scattering. Structure & Function. Vol. 2: Proteins.
Eds. R. H. Sarma & M. H. Sarma. 61-68 (1992).
28. P. Hagmar, S. Pierrou, P. Nielsen, B. Nordén, & M. Kubista.
Ionic Strength Dependence of the Binding of Methylene Blue to Chromatin and Calf Thymus DNA.
J. Biomol. Struct. Dyn. 9, 667-679 (1992).
27. B. Albinsson, S. Eriksson, R. Lyng, & M. Kubista.
The Electronically Excited States of 2-phenylindole.
Chem. Phys. 151, 149-157(1991).
26. M. Takahashi, M. Kubista, & B. Nordén.
Co-ordination of Multiple DNA molecules in RecA fiber Evidenced by Linear Dichroism Spectroscopy.
Biochemie, 73, 219-226 (1991).
25. B. Persson, J. Rydström, & M. Kubista.
A Circular Dichroism Study of Mitochondrial Transhydrogenase from Beef Heart.
Biophys. Chem. 39, 267-272(1991).
24. B. Nordén, S. Eriksson, S. Kim, M. Kubista, R. Lyng, & B. ?kerman.
DNA Drug Interactions Studied with Polarized Light Spectroscopy: The DAPI case. The 23rd Jerusalem Symposium on Quantum Chemistry and Biochemistry.
Eds B. Pullman & J. Jortner. Vol. 23. Kluwer Acad. Publ. Dordrecht. 23-41 (1990).">
23. B. Nordén, C. Elvingson, T. Eriksson, M. Kubista, B. Sjöberg, M. Takahashi, & K. Mortensen.
Structure of a RecA-DNA Complex from Linear Dichroism and Small-angle Neutron-scattering in Flow-oriented Solution.
J. Mol. Biol. 216, 223-228 (1990).
22. S. Boström, J. Deinum, J.-E. Löfroth, M. Wirth, & M. Kubista.
Conformational Differences between Latent and Active Plasminogen ActivatorInhibitor, PAI-1: A Spectroscopic Study.
Thromb. Res. 59, 851-858 (1990).
21. B. Albinsson, M. Kubista, K. Sandros, & B. Nordén. Electronic
Linear Dichroism Spectrum and Transition Moment Directions of the Hypermodified Nucleic Acid Base Wye.
J. Phys. Chem. 94, 4006-4011 (1990).
20. M. Chiesa, I. Domini, B. Samori, S. Eriksson, M. Kubista & B. Nordén.
Multisite Distribution of Solute Molecules in Micelles. Benzene in a Nematic Phase of Potassium Laurate/Decanol/Water.
Gaz. Chim. Ital. 120, 667-670 (1990).
19. M. Kubista, P. Hagmar, P. Nielsen & B. Nordén.
Reinterpretation of Linear Dichroism of Chromatin Supports a Perpendicular Linker Orientation in the Folded State.
J. Biomol. Struct. Dyn. 1, 37-54 (1990).
18. M. Kubista, M. Takahashi & B. Nordén.
Stoichiometry, Base Orientation, and Nuclease Accessibility of RecA-DNA Complexes Seen by Polarized Light in Flow-oriented Solution. Implications for the mechanism of genetic recombination.
J. Biol. Chem. 265, 18891-18897 (1990).
17. M. Kubista.
A New Method for the Analysis of Correlated Data Using Procrustes Rotation which is Suitable for Spectral Analysis.
Chemomet. and Intell. Lab. Syst. 7, 273-279 (1990).
16. B. Albinsson, M. Kubista, B. Nordén & E. Thulstrup.
Near-Ultraviolet Electronic Transitions of the Tryptophan Chromophore: Linear Dichroism, Fluorescence anisotropy, and Magnetic Circular Dichroism Spectra of Some Indole Derivatives.
J. Phys. Chem. 93, 6646-6654 (1989).
15. P. Hagmar, R. Marquet, P. Colson, M. Kubista, P. Nielsen, B. Nordén, & C. Houssier.
Electric and Flow Linear Dichroism of Unfolded and Condensed Chromatin: A Comparative Study at Low and Intermediate Ionic Strength.
J. Biomol. Struct. Dyn. 7, 19-33 (1989).
14.M. Kubista, B. ?kerman& B. Albinsson.
Characterization of the Electronic Structure of 4’,6-Diamidino-2-phenylindole.
J. Amer. Chem. Soc. 111, 7031-7035 (1989).
13.M. Takahashi, M. Kubista, & B. Nordén.
Binding of RecA Protein to Z-form DNA Studied with Circular and Linear Dichroism Spectroscopy.
J. Biol. Chem. 264, 8568-8574 (1989).
12. M. Takahashi, M. Kubista, & B. Nordén.
Binding Stoichiometry and Structureof RecA-DNA Complexes Studied by Flow Linear Dichroism and Fluorescence Spectroscopy. Evidence for multiple heterogeneous DNA co-ordination.
J. Mol. Biol. 205, 137-147 (1989).
11. M. Kubista, B. Albinsson, B.?kerman, R. Lyng & B. Nordén.
Characterization of Spectroscopic Properties of Aromatic Molecules by Polarized Spectroscopy.
Finn. Chem. Lett. 38-39 (1988).
10. M. Kubista.
Protein-DNA Complexes Studied with Polarized Light Spectroscopy. Doctoral thesis.
Chalmers University of Technology.
9. M. Kubista, M. Takahashi & B. Nordén.
Competitive Binding between Unmodified and Etheno DNA provides information about Structure and Stoichiometries of RecA-DNA Complexes.
Nucleosides & Nucleotides 7(5&6), 783-786 (1988).
8. B. Nordén & M. Kubista.
Linear Dichroism and Induced Circular Dichroism for Studying Structure and Interactions of DNA. In ‘Polarized Spectroscopy of Ordered Systems’.
Eds. B. Samori & E. Thulstrup. NATO ASI Series C, 242. 133-165 (1988).
7. M. Kubista, P. Nielsen & B. Nordén.
Flow Linear Dichroism supports an Accordion Model for the Salt-induced Condensation of Chromatin.
Biochem. Pharm. 17, 1813-1814 (1988).
6. M. Kubista, B. ?kerman & B. Nordén.
Induced Circular Dichroism in Nonintercalative DNA-Drug Complexes. Sector Rules for Structural Applications.
J. Phys. Chem. 92, 2352-2356 (1988).
5. M. Kubista.
A Study of Non-Intercalator DNA Interactions with Polarised Light Spectroscopy. Licentiate thesis.
Chalmers University of Technology.
4. M. Kubista, B. ?kerman & B. Nordén.
Characterization of Interaction between DNA and 4’,6-Diamidino-2-phenylindole by Optical Spectroscopy.
Biochem. 26, 4545-4553 (1987).
3. M. Takahashi, M. Kubista, & B. Nordén.
Linear Dichroism Study of RecA-DNA Complexes. Structural evidence and binding stoichiometries.
J. Biol. Chem. 292, 8109-8111 (1987).
2. M. Kubista, M. Takahashi & B. Nordén.
Linear Dichroism - A potential method for studying DNA-protein interactions.
Springer Ser. Biophys. I. 145-147 (1987).">
1. M. Kubista, T. Härd, P. Nielsen & B. Nordén.
Structural Transition of Chromatin at Low Salt Concentrations: A Flow Linear Dichroism Study.
Biochem. 24, 6336-6342 (1985).
